Wall clock time and date at job start Tue Mar 31 2020 23:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35958 * 116.99813 * 2 1 4 4 C 1.38655 * 120.06410 * 359.97438 * 3 2 1 5 5 C 1.38177 * 119.97092 * 180.02562 * 4 3 2 6 6 C 1.38267 * 120.09453 * 359.97438 * 5 4 3 7 7 C 1.38251 * 120.12749 * 0.02562 * 6 5 4 8 8 C 1.50693 * 119.98622 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.47245 * 264.99721 * 8 7 6 10 10 C 1.50703 * 109.46864 * 180.02562 * 9 8 7 11 11 O 1.21281 * 120.00343 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99496 * 180.02562 * 10 9 8 13 13 C 1.46503 * 119.99611 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.46978 * 179.97438 * 13 12 10 15 15 H 1.09003 * 109.47092 * 305.00045 * 14 13 12 16 16 O 1.42896 * 109.47376 * 64.99976 * 14 13 12 17 17 C 1.52999 * 109.47427 * 184.99969 * 14 13 12 18 18 N 1.46493 * 109.47808 * 179.97438 * 17 14 13 19 19 C 1.36936 * 120.00425 * 180.02562 * 18 17 14 20 20 H 1.07999 * 119.99981 * 0.02562 * 19 18 17 21 21 C 1.38810 * 119.99741 * 180.02562 * 19 18 17 22 22 N 1.31615 * 120.00634 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99865 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47053 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47324 * 119.99945 * 23 21 19 26 26 H 1.48494 * 109.47065 * 240.00047 * 23 21 19 27 27 C 1.38338 * 120.03013 * 359.97438 * 7 6 5 28 28 F 1.35100 * 120.04992 * 180.28191 * 27 7 6 29 29 H 1.09003 * 109.47092 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47200 * 300.00040 * 1 2 3 31 31 H 1.08998 * 109.47460 * 60.00264 * 1 2 3 32 32 H 1.08005 * 120.01507 * 0.02562 * 4 3 2 33 33 H 1.07999 * 119.95506 * 180.02562 * 5 4 3 34 34 H 1.08000 * 119.93539 * 179.97438 * 6 5 4 35 35 H 1.09003 * 109.47058 * 25.00266 * 8 7 6 36 36 H 1.09007 * 109.46913 * 144.99613 * 8 7 6 37 37 H 1.08999 * 109.47088 * 300.00072 * 9 8 7 38 38 H 1.08994 * 109.47014 * 59.99952 * 9 8 7 39 39 H 0.96996 * 120.00399 * 359.97438 * 12 10 9 40 40 H 1.08999 * 109.47222 * 299.99832 * 13 12 10 41 41 H 1.09002 * 109.47197 * 60.00305 * 13 12 10 42 42 H 0.96700 * 114.00140 * 59.99624 * 16 14 13 43 43 H 1.08995 * 109.47248 * 300.00358 * 17 14 13 44 44 H 1.09007 * 109.46996 * 59.99763 * 17 14 13 45 45 H 0.97010 * 119.99578 * 0.02562 * 18 17 14 46 46 H 0.96997 * 120.00530 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 1.2922 2.3751 -0.0005 5 6 1.9215 3.6053 -0.0011 6 6 3.3023 3.6777 -0.0005 7 6 4.0579 2.5199 0.0000 8 6 5.5625 2.6026 0.0000 9 6 6.0787 2.5043 -1.4369 10 6 7.5835 2.5864 -1.4368 11 8 8.1840 2.7107 -0.3904 12 7 8.2620 2.5216 -2.5996 13 6 9.7249 2.6008 -2.5994 14 6 10.2411 2.5027 -4.0363 15 1 9.8550 1.5948 -4.4999 16 8 9.8009 3.6411 -4.7794 17 6 11.7704 2.4599 -4.0271 18 7 12.2647 2.3653 -5.4029 19 6 13.6116 2.3124 -5.6445 20 1 14.3094 2.3401 -4.8207 21 6 14.0798 2.2233 -6.9482 22 7 13.2294 2.1891 -7.9521 23 14 15.9171 2.1505 -7.2778 24 1 16.6537 2.2041 -5.9894 25 1 16.2438 0.8852 -7.9830 26 1 16.3146 3.3050 -8.1229 27 6 3.4333 1.2856 0.0005 28 9 4.1713 0.1540 0.0068 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 0.2136 2.3200 -0.0005 33 1 1.3340 4.5115 -0.0011 34 1 3.7914 4.6406 -0.0014 35 1 5.8742 3.5527 0.4339 36 1 5.9715 1.7822 0.5899 37 1 5.7671 1.5542 -1.8708 38 1 5.6698 3.3246 -2.0267 39 1 7.7818 2.4218 -3.4364 40 1 10.0373 3.5503 -2.1648 41 1 10.1331 1.7796 -2.0102 42 1 10.1078 4.4860 -4.4231 43 1 12.1565 3.3676 -3.5636 44 1 12.1062 1.5914 -3.4603 45 1 11.6379 2.3401 -6.1428 46 1 13.5566 2.1273 -8.8631 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753912876.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:12 Heat of formation + Delta-G solvation = -170.069244 kcal Electronic energy + Delta-G solvation = -28087.434089 eV Core-core repulsion = 23697.803675 eV Total energy + Delta-G solvation = -4389.630414 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.84386 -41.10119 -40.77912 -39.05006 -38.64300 -36.08097 -35.29286 -34.81533 -33.19817 -31.35721 -31.12488 -30.11725 -28.22794 -27.25881 -25.59594 -24.16169 -23.54822 -22.76549 -22.18834 -21.19651 -19.26086 -19.11242 -18.34838 -18.11430 -17.93896 -17.57903 -17.23979 -17.14617 -16.47849 -16.42260 -16.22184 -16.00585 -15.73010 -15.49016 -15.48051 -14.98567 -14.85848 -14.65809 -14.27724 -14.08766 -13.89098 -13.72419 -13.58266 -13.19384 -13.03461 -12.93856 -12.92860 -12.78821 -12.49845 -12.12662 -12.08443 -11.98385 -11.96375 -11.94712 -11.81357 -11.19073 -11.00019 -10.80333 -10.12687 -9.75939 -9.22301 -9.01684 -7.95581 -5.25139 0.08274 0.25896 1.47678 1.48352 1.58574 1.62312 2.10329 2.21155 2.55100 2.58551 3.26188 3.35653 3.44711 3.55074 3.61398 3.84530 3.87942 4.00323 4.03882 4.06083 4.19994 4.25226 4.26991 4.37935 4.38520 4.42022 4.47537 4.61222 4.62107 4.71949 4.75289 4.86980 4.92822 4.99818 5.07509 5.14587 5.20865 5.32564 5.39042 5.44569 5.48124 5.68583 6.25675 6.30450 6.52364 6.80110 7.22260 7.32969 8.08153 8.31627 9.27768 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026243 B = 0.001540 C = 0.001519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.711314 B =18177.344215 C =18428.189367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.340 6.340 3 C 0.081 3.919 4 C -0.184 4.184 5 C -0.078 4.078 6 C -0.125 4.125 7 C -0.082 4.082 8 C -0.060 4.060 9 C -0.126 4.126 10 C 0.512 3.488 11 O -0.585 6.585 12 N -0.714 5.714 13 C 0.102 3.898 14 C 0.109 3.891 15 H 0.100 0.900 16 O -0.562 6.562 17 C 0.121 3.879 18 N -0.739 5.739 19 C -0.249 4.249 20 H 0.076 0.924 21 C -0.074 4.074 22 N -0.967 5.967 23 Si 0.975 3.025 24 H -0.266 1.266 25 H -0.293 1.293 26 H -0.292 1.292 27 C 0.034 3.966 28 F -0.151 7.151 29 H 0.114 0.886 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.163 0.837 33 H 0.167 0.833 34 H 0.158 0.842 35 H 0.093 0.907 36 H 0.061 0.939 37 H 0.100 0.900 38 H 0.125 0.875 39 H 0.415 0.585 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.385 0.615 43 H 0.031 0.969 44 H 0.032 0.968 45 H 0.377 0.623 46 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.014 3.257 18.455 37.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.254 6.254 3 C 0.035 3.965 4 C -0.202 4.202 5 C -0.096 4.096 6 C -0.143 4.143 7 C -0.083 4.083 8 C -0.098 4.098 9 C -0.165 4.165 10 C 0.300 3.700 11 O -0.465 6.465 12 N -0.366 5.366 13 C -0.023 4.023 14 C 0.049 3.951 15 H 0.118 0.882 16 O -0.368 6.368 17 C -0.006 4.006 18 N -0.382 5.382 19 C -0.381 4.381 20 H 0.094 0.906 21 C -0.267 4.267 22 N -0.618 5.618 23 Si 0.804 3.196 24 H -0.190 1.190 25 H -0.220 1.220 26 H -0.219 1.219 27 C 0.014 3.986 28 F -0.130 7.130 29 H 0.133 0.867 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.181 0.819 33 H 0.184 0.816 34 H 0.175 0.825 35 H 0.112 0.888 36 H 0.080 0.920 37 H 0.118 0.882 38 H 0.143 0.857 39 H 0.252 0.748 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.234 0.766 43 H 0.049 0.951 44 H 0.050 0.950 45 H 0.210 0.790 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -31.581 2.636 18.896 36.897 hybrid contribution 1.077 -0.266 -0.674 1.298 sum -30.504 2.370 18.222 35.611 Atomic orbital electron populations 1.23416 0.75678 1.05743 1.02824 1.86111 1.24168 1.26378 1.88793 1.19250 0.90594 0.86660 1.00007 1.21505 1.01563 0.90868 1.06297 1.21438 0.94386 0.98174 0.95616 1.21240 0.94112 0.97766 1.01185 1.19819 0.96370 0.91192 1.00924 1.20189 0.89091 1.04382 0.96131 1.21615 0.89627 1.06276 0.99016 1.21121 0.91093 0.74892 0.82920 1.90693 1.71755 1.51283 1.32791 1.45876 1.07000 1.73923 1.09807 1.21835 0.80821 1.02971 0.96708 1.22079 0.92638 0.90180 0.90244 0.88198 1.86553 1.76483 1.16951 1.56852 1.21408 0.93189 0.99035 0.87001 1.42407 1.03951 1.88958 1.02919 1.19691 0.84846 1.41275 0.92290 0.90586 1.25590 1.02066 1.03518 0.95521 1.69837 1.34495 1.59058 0.98395 0.85059 0.80033 0.76698 0.77854 1.19038 1.22016 1.21938 1.17274 0.86706 0.82730 1.11865 1.91438 1.76953 1.49969 1.94592 0.86733 0.90994 0.90964 0.81931 0.81589 0.82470 0.88828 0.92022 0.88171 0.85668 0.74810 0.90794 0.90998 0.76604 0.95086 0.95039 0.79050 0.93979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 113.37 1.11 1.24 16 2 O -0.34 -6.10 10.36 -93.08 -0.96 -7.06 16 3 C 0.08 1.41 6.69 22.53 0.15 1.56 16 4 C -0.18 -1.89 9.04 22.35 0.20 -1.69 16 5 C -0.08 -0.63 10.04 22.26 0.22 -0.40 16 6 C -0.13 -1.34 9.68 22.28 0.22 -1.13 16 7 C -0.08 -1.35 5.14 -19.84 -0.10 -1.45 16 8 C -0.06 -1.09 4.41 29.85 0.13 -0.96 16 9 C -0.13 -2.07 5.68 29.85 0.17 -1.90 16 10 C 0.51 11.99 7.83 87.66 0.69 12.68 16 11 O -0.58 -18.44 15.98 -3.03 -0.05 -18.49 16 12 N -0.71 -15.50 5.50 -463.05 -2.55 -18.05 16 13 C 0.10 2.56 5.31 86.38 0.46 3.02 16 14 C 0.11 3.22 3.09 30.59 0.09 3.31 16 15 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 16 O -0.56 -17.01 13.03 -148.98 -1.94 -18.95 16 17 C 0.12 4.62 5.92 86.38 0.51 5.13 16 18 N -0.74 -37.47 5.49 -343.47 -1.89 -39.35 16 19 C -0.25 -14.00 9.99 84.03 0.84 -13.16 16 20 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 21 C -0.07 -4.31 5.50 84.86 0.47 -3.85 16 22 N -0.97 -59.79 13.06 21.65 0.28 -59.50 16 23 Si 0.97 46.36 29.55 68.60 2.03 48.39 16 24 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 25 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 26 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 27 C 0.03 0.70 7.25 22.46 0.16 0.87 16 28 F -0.15 -3.91 16.41 44.97 0.74 -3.17 16 29 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.07 0.29 7.66 -2.39 -0.02 0.27 16 31 H 0.07 0.30 7.66 -2.39 -0.02 0.28 16 32 H 0.16 0.70 6.30 -2.91 -0.02 0.68 16 33 H 0.17 0.23 8.06 -2.91 -0.02 0.21 16 34 H 0.16 0.97 8.06 -2.91 -0.02 0.95 16 35 H 0.09 1.59 8.01 -2.39 -0.02 1.57 16 36 H 0.06 1.42 7.74 -2.38 -0.02 1.40 16 37 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.42 7.49 8.47 -92.71 -0.79 6.71 16 40 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.39 9.58 9.05 -74.06 -0.67 8.91 16 43 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 45 H 0.38 20.67 7.54 -92.70 -0.70 19.97 16 46 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -78.54 395.92 -0.14 -78.68 By element: Atomic # 1 Polarization: 35.39 SS G_CDS: -1.12 Total: 34.27 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: 5.32 Total: 3.25 kcal Atomic # 7 Polarization: -112.76 SS G_CDS: -4.15 Total: -116.91 kcal Atomic # 8 Polarization: -41.55 SS G_CDS: -2.95 Total: -44.51 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 0.74 Total: -3.17 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -78.54 -0.14 -78.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753912876.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.394 kcal (2) G-P(sol) polarization free energy of solvation -78.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds