Wall clock time and date at job start Tue Mar 31 2020 23:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35948 * 117.00499 * 2 1 4 4 C 1.38664 * 120.06477 * 359.72167 * 3 2 1 5 5 C 1.38175 * 119.97332 * 180.23718 * 4 3 2 6 6 C 1.38263 * 120.09620 * 0.06003 * 5 4 3 7 7 C 1.50702 * 119.93716 * 179.97438 * 6 5 4 8 8 C 1.52995 * 109.46958 * 269.97845 * 7 6 5 9 9 C 1.50702 * 109.47338 * 180.02562 * 8 7 6 10 10 O 1.21285 * 119.99228 * 0.02562 * 9 8 7 11 11 N 1.34767 * 120.00401 * 180.02562 * 9 8 7 12 12 C 1.46498 * 120.00202 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47449 * 179.97438 * 12 11 9 14 14 H 1.09005 * 109.47232 * 295.00154 * 13 12 11 15 15 C 1.53003 * 109.47304 * 175.00047 * 13 12 11 16 16 O 1.42899 * 109.47157 * 304.99749 * 15 13 12 17 17 N 1.46501 * 109.47085 * 54.99971 * 13 12 11 18 18 C 1.36938 * 119.99756 * 205.00450 * 17 13 12 19 19 H 1.07993 * 120.00359 * 359.97438 * 18 17 13 20 20 C 1.38811 * 119.99715 * 179.97438 * 18 17 13 21 21 N 1.31625 * 119.99963 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 120.00225 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47247 * 89.99798 * 22 20 18 24 24 H 1.48499 * 109.46984 * 210.00094 * 22 20 18 25 25 H 1.48502 * 109.46741 * 329.99802 * 22 20 18 26 26 C 1.38254 * 120.12303 * 359.96068 * 6 5 4 27 27 C 1.38326 * 120.03416 * 0.02562 * 26 6 5 28 28 F 1.35098 * 120.05006 * 179.97438 * 27 26 6 29 29 H 1.09001 * 109.46836 * 300.00713 * 1 2 3 30 30 H 1.09001 * 109.46915 * 60.00028 * 1 2 3 31 31 H 1.08996 * 109.47572 * 179.97438 * 1 2 3 32 32 H 1.08008 * 120.01117 * 0.25210 * 4 3 2 33 33 H 1.07999 * 119.95287 * 180.02562 * 5 4 3 34 34 H 1.08994 * 109.47166 * 29.97963 * 7 6 5 35 35 H 1.08994 * 109.46843 * 149.98219 * 7 6 5 36 36 H 1.08999 * 109.47719 * 300.00206 * 8 7 6 37 37 H 1.09007 * 109.47228 * 60.00357 * 8 7 6 38 38 H 0.97001 * 120.00529 * 359.97438 * 11 9 8 39 39 H 1.09001 * 109.47355 * 299.99571 * 12 11 9 40 40 H 1.09001 * 109.47445 * 59.99947 * 12 11 9 41 41 H 1.08993 * 109.47339 * 65.00212 * 15 13 12 42 42 H 1.09002 * 109.46835 * 184.99661 * 15 13 12 43 43 H 0.96692 * 114.00086 * 179.97438 * 16 15 13 44 44 H 0.97001 * 120.00035 * 25.00035 * 17 13 12 45 45 H 0.97002 * 119.99957 * 180.02562 * 21 20 18 46 46 H 1.08004 * 119.98065 * 180.02562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2925 2.3751 -0.0058 5 6 1.9218 3.6052 -0.0108 6 6 3.3026 3.6775 -0.0112 7 6 3.9853 5.0210 -0.0172 8 6 4.2167 5.4690 -1.4616 9 6 4.9000 6.8122 -1.4677 10 8 5.1752 7.3572 -0.4197 11 7 5.2052 7.4077 -2.6375 12 6 5.8700 8.7132 -2.6433 13 6 6.1013 9.1613 -4.0878 14 1 6.8004 8.4796 -4.5722 15 6 6.6812 10.5772 -4.0960 16 8 5.8204 11.4487 -3.3600 17 7 4.8280 9.1510 -4.8122 18 6 4.8161 9.0066 -6.1739 19 1 5.7454 8.9009 -6.7139 20 6 3.6096 8.9963 -6.8602 21 7 3.5981 8.8581 -8.1691 22 14 2.0021 9.1785 -5.9262 23 1 1.6481 10.6172 -5.8261 24 1 0.9257 8.4528 -6.6473 25 1 2.1547 8.6102 -4.5628 26 6 4.0580 2.5196 -0.0058 27 6 3.4334 1.2854 -0.0006 28 9 4.1713 0.1538 0.0042 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 0.2138 2.3201 -0.0063 33 1 1.3344 4.5114 -0.0149 34 1 3.3564 5.7504 0.4931 35 1 4.9431 4.9440 0.4972 36 1 4.8456 4.7396 -1.9720 37 1 3.2588 5.5460 -1.9761 38 1 4.9855 6.9717 -3.4757 39 1 5.2420 9.4431 -2.1324 40 1 6.8282 8.6354 -2.1296 41 1 7.6689 10.5679 -3.6353 42 1 6.7631 10.9303 -5.1239 43 1 6.1269 12.3650 -3.3230 44 1 3.9933 9.2463 -4.3273 45 1 2.7550 8.8512 -8.6488 46 1 5.1365 2.5788 -0.0057 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755633611.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:23 Heat of formation + Delta-G solvation = -163.431481 kcal Electronic energy + Delta-G solvation = -28755.942490 eV Core-core repulsion = 24366.599911 eV Total energy + Delta-G solvation = -4389.342579 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.85372 -41.15201 -40.67783 -38.94274 -38.58142 -36.44302 -35.18989 -34.49500 -33.35550 -31.75039 -30.97281 -30.13272 -28.33013 -26.80926 -25.38950 -24.74207 -23.79642 -22.19957 -21.68460 -21.05918 -19.81988 -19.31948 -18.28238 -18.17629 -17.99057 -17.56879 -17.20650 -17.14466 -16.67015 -16.37044 -16.06798 -15.85337 -15.80980 -15.24748 -15.12994 -15.07293 -14.99355 -14.62795 -14.43570 -14.27026 -14.10208 -13.68087 -13.58016 -13.15370 -13.06622 -12.90132 -12.79637 -12.60924 -12.43371 -12.30414 -12.14602 -11.90220 -11.88761 -11.85868 -11.76633 -11.08807 -10.82703 -10.73546 -9.98385 -9.95749 -9.31860 -9.14433 -7.99610 -5.32262 0.09895 0.17361 1.38963 1.43702 1.48954 1.71254 2.18417 2.28898 2.50349 2.55340 3.18760 3.32301 3.47110 3.61755 3.71088 3.72852 3.91454 3.98029 4.05728 4.18597 4.27316 4.31443 4.36654 4.36934 4.41675 4.51066 4.54718 4.62348 4.70166 4.71153 4.84453 4.86444 4.90574 4.99461 5.07557 5.15964 5.20016 5.20814 5.53512 5.54179 5.64639 5.79704 6.23806 6.26784 6.63424 7.03089 7.10336 7.30434 7.84861 8.04149 9.21355 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011971 B = 0.002394 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.408569 B =11691.007143 C =13049.896165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.336 6.336 3 C 0.080 3.920 4 C -0.176 4.176 5 C -0.082 4.082 6 C -0.090 4.090 7 C -0.052 4.052 8 C -0.132 4.132 9 C 0.509 3.491 10 O -0.585 6.585 11 N -0.720 5.720 12 C 0.127 3.873 13 C 0.165 3.835 14 H 0.080 0.920 15 C 0.065 3.935 16 O -0.583 6.583 17 N -0.739 5.739 18 C -0.221 4.221 19 H 0.066 0.934 20 C -0.057 4.057 21 N -0.981 5.981 22 Si 0.947 3.053 23 H -0.292 1.292 24 H -0.298 1.298 25 H -0.252 1.252 26 C -0.111 4.111 27 C 0.040 3.960 28 F -0.148 7.148 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.118 0.882 32 H 0.163 0.837 33 H 0.153 0.847 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.411 0.589 39 H 0.057 0.943 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.033 0.967 43 H 0.388 0.612 44 H 0.364 0.636 45 H 0.256 0.744 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.954 -12.559 19.218 23.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.250 6.250 3 C 0.033 3.967 4 C -0.194 4.194 5 C -0.100 4.100 6 C -0.090 4.090 7 C -0.090 4.090 8 C -0.172 4.172 9 C 0.297 3.703 10 O -0.466 6.466 11 N -0.371 5.371 12 C 0.002 3.998 13 C 0.056 3.944 14 H 0.098 0.902 15 C -0.016 4.016 16 O -0.390 6.390 17 N -0.382 5.382 18 C -0.352 4.352 19 H 0.084 0.916 20 C -0.248 4.248 21 N -0.632 5.632 22 Si 0.776 3.224 23 H -0.219 1.219 24 H -0.225 1.225 25 H -0.177 1.177 26 C -0.130 4.130 27 C 0.020 3.980 28 F -0.127 7.127 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.136 0.864 32 H 0.181 0.819 33 H 0.171 0.829 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.130 0.870 37 H 0.125 0.875 38 H 0.247 0.753 39 H 0.076 0.924 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.052 0.948 43 H 0.236 0.764 44 H 0.197 0.803 45 H 0.065 0.935 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -2.901 -13.005 19.810 23.874 hybrid contribution -0.787 0.497 -0.670 1.147 sum -3.688 -12.508 19.139 23.159 Atomic orbital electron populations 1.23421 0.75750 1.05839 1.02721 1.86099 1.24077 1.26099 1.88761 1.19235 0.90821 0.86467 1.00132 1.21415 1.01544 0.90612 1.05852 1.21270 0.93887 0.98257 0.96587 1.19660 0.93733 0.94248 1.01374 1.20179 1.01412 0.92177 0.95185 1.21705 1.02871 0.93006 0.99576 1.21178 0.78236 0.88009 0.82904 1.90661 1.55970 1.67360 1.32595 1.46111 1.60560 1.21130 1.09325 1.21385 0.97801 0.84131 0.96450 1.20821 0.88522 0.94332 0.90679 0.90231 1.22807 0.92676 0.91542 0.94575 1.86456 1.52826 1.23808 1.75928 1.42675 1.03584 1.88588 1.03347 1.19009 0.93544 1.39738 0.82931 0.91635 1.25330 1.00639 1.02961 0.95915 1.69861 1.26237 1.59456 1.07638 0.85526 0.80559 0.77315 0.78954 1.21912 1.22481 1.17664 1.21066 1.01791 0.89345 1.00795 1.17294 0.86616 0.83038 1.11025 1.91451 1.76812 1.49822 1.94623 0.91026 0.91318 0.86391 0.81925 0.82886 0.90105 0.90291 0.86998 0.87482 0.75293 0.92437 0.90312 0.91405 0.94816 0.76398 0.80308 0.93499 0.82951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.34 -6.66 10.36 -92.97 -0.96 -7.62 16 3 C 0.08 1.60 6.69 22.53 0.15 1.76 16 4 C -0.18 -2.66 9.04 22.36 0.20 -2.46 16 5 C -0.08 -1.25 9.69 22.26 0.22 -1.03 16 6 C -0.09 -1.55 5.13 -19.85 -0.10 -1.65 16 7 C -0.05 -0.95 4.63 29.85 0.14 -0.81 16 8 C -0.13 -2.57 5.68 29.85 0.17 -2.40 16 9 C 0.51 13.98 7.83 87.66 0.69 14.67 16 10 O -0.58 -19.81 15.98 -3.04 -0.05 -19.86 16 11 N -0.72 -20.61 5.39 -463.07 -2.49 -23.10 16 12 C 0.13 3.87 5.12 86.38 0.44 4.32 16 13 C 0.17 5.54 2.84 44.99 0.13 5.67 16 14 H 0.08 2.60 8.08 -2.38 -0.02 2.58 16 15 C 0.06 1.96 6.86 71.98 0.49 2.45 16 16 O -0.58 -17.80 12.64 -148.98 -1.88 -19.68 16 17 N -0.74 -31.30 4.31 -322.94 -1.39 -32.70 16 18 C -0.22 -11.54 10.41 84.03 0.87 -10.66 16 19 H 0.07 3.71 8.06 -2.91 -0.02 3.68 16 20 C -0.06 -3.16 5.50 84.86 0.47 -2.70 16 21 N -0.98 -60.26 13.97 21.65 0.30 -59.96 16 22 Si 0.95 44.21 27.73 68.60 1.90 46.12 16 23 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 24 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 25 H -0.25 -10.55 6.52 99.48 0.65 -9.90 16 26 C -0.11 -2.10 9.67 22.29 0.22 -1.88 16 27 C 0.04 0.89 7.31 22.45 0.16 1.06 16 28 F -0.15 -3.81 17.11 44.97 0.77 -3.04 16 29 H 0.07 0.49 7.67 -2.39 -0.02 0.47 16 30 H 0.07 0.53 7.65 -2.39 -0.02 0.51 16 31 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.16 1.53 6.30 -2.91 -0.02 1.51 16 33 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 34 H 0.08 1.54 8.04 -2.39 -0.02 1.52 16 35 H 0.08 1.51 8.04 -2.39 -0.02 1.49 16 36 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.11 1.90 8.14 -2.38 -0.02 1.88 16 38 H 0.41 11.63 8.14 -92.71 -0.75 10.87 16 39 H 0.06 1.99 7.40 -2.39 -0.02 1.97 16 40 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.39 8.04 9.12 -74.06 -0.68 7.36 16 44 H 0.36 15.77 5.66 -92.71 -0.52 15.24 16 45 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 46 H 0.15 2.44 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -74.32 391.89 0.57 -73.75 By element: Atomic # 1 Polarization: 39.48 SS G_CDS: -0.98 Total: 38.50 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: 5.36 Total: 7.59 kcal Atomic # 7 Polarization: -112.17 SS G_CDS: -3.58 Total: -115.75 kcal Atomic # 8 Polarization: -44.27 SS G_CDS: -2.89 Total: -47.16 kcal Atomic # 9 Polarization: -3.81 SS G_CDS: 0.77 Total: -3.04 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.90 Total: 46.12 kcal Total: -74.32 0.57 -73.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755633611.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.684 kcal (2) G-P(sol) polarization free energy of solvation -74.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds