Wall clock time and date at job start Tue Mar 31 2020 22:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46496 * 120.00628 * 2 1 4 4 C 1.52999 * 109.47346 * 270.00398 * 3 2 1 5 5 H 1.08999 * 109.47054 * 59.99715 * 4 3 2 6 6 O 1.42899 * 109.46729 * 299.99602 * 4 3 2 7 7 C 1.53006 * 109.47037 * 179.97438 * 4 3 2 8 8 N 1.46508 * 109.46696 * 184.99794 * 7 4 3 9 9 C 1.36938 * 119.99617 * 179.97438 * 8 7 4 10 10 H 1.07997 * 120.00186 * 0.02562 * 9 8 7 11 11 C 1.38812 * 119.99776 * 180.02562 * 9 8 7 12 12 N 1.31615 * 119.99891 * 180.02562 * 11 9 8 13 13 Si 1.86797 * 119.99969 * 0.02562 * 11 9 8 14 14 H 1.48499 * 109.47144 * 90.00005 * 13 11 9 15 15 H 1.48506 * 109.47079 * 210.00247 * 13 11 9 16 16 H 1.48502 * 109.47340 * 329.99659 * 13 11 9 17 17 C 1.34774 * 119.99828 * 180.02562 * 2 1 3 18 18 O 1.21279 * 120.00472 * 179.97438 * 17 2 1 19 19 C 1.50706 * 120.00020 * 0.02562 * 17 2 1 20 20 C 1.52997 * 109.47238 * 180.02562 * 19 17 2 21 21 O 1.42895 * 109.47269 * 179.97438 * 20 19 17 22 22 C 1.35901 * 117.00475 * 179.97438 * 21 20 19 23 23 C 1.38772 * 120.03675 * 359.72234 * 22 21 20 24 24 C 1.38133 * 119.99148 * 179.74238 * 23 22 21 25 25 C 1.38252 * 120.07670 * 0.53838 * 24 23 22 26 26 C 1.38478 * 120.08761 * 359.73833 * 25 24 23 27 27 F 1.35099 * 119.99454 * 180.02562 * 26 25 24 28 28 C 1.38380 * 120.00374 * 359.97438 * 26 25 24 29 29 H 1.08997 * 109.47477 * 270.00204 * 1 2 3 30 30 H 1.09004 * 109.46971 * 29.99775 * 1 2 3 31 31 H 1.08993 * 109.47768 * 149.99839 * 1 2 3 32 32 H 1.09008 * 109.47096 * 29.99824 * 3 2 1 33 33 H 1.09003 * 109.47776 * 149.99700 * 3 2 1 34 34 H 0.96694 * 114.00201 * 299.99337 * 6 4 3 35 35 H 1.08995 * 109.46903 * 304.99761 * 7 4 3 36 36 H 1.08996 * 109.47167 * 65.00205 * 7 4 3 37 37 H 0.96993 * 120.00021 * 359.97438 * 8 7 4 38 38 H 0.96996 * 120.00178 * 180.02562 * 12 11 9 39 39 H 1.09001 * 109.46953 * 299.99667 * 19 17 2 40 40 H 1.09000 * 109.47318 * 59.99264 * 19 17 2 41 41 H 1.09001 * 109.46832 * 299.99686 * 20 19 17 42 42 H 1.09004 * 109.47261 * 59.99705 * 20 19 17 43 43 H 1.07996 * 120.00604 * 0.02562 * 23 22 21 44 44 H 1.07997 * 119.95999 * 180.26927 * 24 23 22 45 45 H 1.08004 * 119.95612 * 179.76153 * 25 24 23 46 46 H 1.07995 * 120.03883 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4526 1.7103 -1.4425 5 1 1.5001 1.8408 -1.9563 6 8 3.2248 0.7144 -2.1161 7 6 3.2172 3.0357 -1.4424 8 7 3.3571 3.5187 -2.8184 9 6 4.0105 4.6960 -3.0676 10 1 4.4231 5.2682 -2.2499 11 6 4.1426 5.1540 -4.3713 12 7 4.7712 6.2853 -4.6109 13 14 3.4284 4.1647 -5.7857 14 1 2.0311 4.5996 -6.0380 15 1 4.2441 4.3867 -7.0066 16 1 3.4423 2.7213 -5.4369 17 6 2.1388 -1.1672 -0.0005 18 8 3.3516 -1.1673 -0.0010 19 6 1.3852 -2.4723 -0.0017 20 6 2.3794 -3.6353 -0.0014 21 8 1.6649 -4.8728 -0.0019 22 6 2.4049 -6.0126 -0.0023 23 6 3.7908 -5.9410 -0.0081 24 6 4.5421 -7.1002 -0.0031 25 6 3.9150 -8.3323 -0.0036 26 6 2.5323 -8.4075 -0.0037 27 9 1.9215 -9.6126 -0.0037 28 6 1.7762 -7.2485 -0.0027 29 1 -0.3634 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3634 -0.8899 -0.5138 32 1 1.6085 2.0284 0.5138 33 1 3.1500 1.1383 0.5139 34 1 4.0872 0.5459 -1.7127 35 1 2.6695 3.7710 -0.8530 36 1 4.2054 2.8849 -1.0080 37 1 2.9868 3.0047 -3.5529 38 1 4.8632 6.6056 -5.5218 39 1 0.7583 -2.5307 0.8881 40 1 0.7588 -2.5294 -0.8919 41 1 3.0067 -3.5772 -0.8910 42 1 3.0054 -3.5780 0.8891 43 1 4.2819 -4.9792 -0.0118 44 1 5.6206 -7.0438 -0.0032 45 1 4.5044 -9.2374 -0.0036 46 1 0.6978 -7.3066 -0.0023 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755781823.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:24 Heat of formation + Delta-G solvation = -149.454710 kcal Electronic energy + Delta-G solvation = -28555.611063 eV Core-core repulsion = 24166.874562 eV Total energy + Delta-G solvation = -4388.736501 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -49.99086 -41.38821 -40.84888 -38.83931 -38.26217 -36.47086 -35.93383 -33.54794 -33.35760 -31.80029 -31.10413 -30.50711 -28.08424 -27.20637 -25.49611 -24.08297 -23.82301 -22.88327 -22.53524 -20.23130 -19.81707 -19.65735 -18.19036 -17.78076 -17.63560 -17.51265 -17.17247 -16.99988 -16.77311 -16.60463 -16.52053 -16.34658 -16.06575 -15.40765 -15.36193 -15.07519 -14.75192 -14.46252 -14.27612 -14.09116 -13.84184 -13.78738 -13.65839 -13.38709 -13.24484 -13.08919 -12.85359 -12.77697 -12.70891 -12.53852 -12.28095 -11.97631 -11.93383 -11.86848 -11.78502 -11.20895 -11.02680 -10.84082 -9.95441 -9.56437 -9.37257 -9.33005 -8.05754 -5.38784 0.06541 0.23841 1.36382 1.39457 1.47601 1.56947 1.67231 2.27769 2.46027 2.54144 3.24210 3.29181 3.40658 3.54255 3.65360 3.72049 3.87251 3.90773 3.95032 4.00152 4.07277 4.16093 4.21328 4.23815 4.36240 4.37491 4.43122 4.54165 4.65301 4.71376 4.73699 4.84228 4.90533 4.95922 4.99996 5.04497 5.18326 5.20650 5.31729 5.46373 5.66481 5.71632 6.18128 6.22643 6.37528 6.75824 7.05158 7.15600 7.81826 7.99957 9.15475 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017687 B = 0.001842 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.725502 B =15200.152119 C =15940.865660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.607 5.607 3 C 0.094 3.906 4 C 0.093 3.907 5 H 0.099 0.901 6 O -0.567 6.567 7 C 0.125 3.875 8 N -0.754 5.754 9 C -0.237 4.237 10 H 0.059 0.941 11 C -0.062 4.062 12 N -0.981 5.981 13 Si 0.956 3.044 14 H -0.274 1.274 15 H -0.295 1.295 16 H -0.260 1.260 17 C 0.518 3.482 18 O -0.575 6.575 19 C -0.129 4.129 20 C 0.077 3.923 21 O -0.318 6.318 22 C 0.148 3.852 23 C -0.224 4.224 24 C -0.048 4.048 25 C -0.192 4.192 26 C 0.122 3.878 27 F -0.141 7.141 28 C -0.201 4.201 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.115 0.885 33 H 0.079 0.921 34 H 0.379 0.621 35 H 0.046 0.954 36 H 0.025 0.975 37 H 0.366 0.634 38 H 0.258 0.742 39 H 0.128 0.872 40 H 0.119 0.881 41 H 0.064 0.936 42 H 0.072 0.928 43 H 0.143 0.857 44 H 0.163 0.837 45 H 0.156 0.844 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.843 -29.524 15.078 34.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.339 5.339 3 C -0.030 4.030 4 C 0.032 3.968 5 H 0.117 0.883 6 O -0.373 6.373 7 C -0.002 4.002 8 N -0.400 5.400 9 C -0.368 4.368 10 H 0.077 0.923 11 C -0.254 4.254 12 N -0.632 5.632 13 Si 0.783 3.217 14 H -0.200 1.200 15 H -0.222 1.222 16 H -0.185 1.185 17 C 0.307 3.693 18 O -0.455 6.455 19 C -0.169 4.169 20 C 0.001 3.999 21 O -0.231 6.231 22 C 0.102 3.898 23 C -0.242 4.242 24 C -0.066 4.066 25 C -0.211 4.211 26 C 0.103 3.897 27 F -0.120 7.120 28 C -0.220 4.220 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.133 0.867 33 H 0.098 0.902 34 H 0.227 0.773 35 H 0.064 0.936 36 H 0.043 0.957 37 H 0.199 0.801 38 H 0.067 0.933 39 H 0.146 0.854 40 H 0.137 0.863 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.160 0.840 44 H 0.180 0.820 45 H 0.174 0.826 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -10.892 -29.357 14.779 34.625 hybrid contribution 0.466 0.079 -0.777 0.909 sum -10.426 -29.278 14.002 34.087 Atomic orbital electron populations 1.22159 0.76873 1.04835 1.03709 1.47738 1.08467 1.04976 1.72681 1.22050 0.99079 0.86084 0.95820 1.22485 0.94617 0.85970 0.93726 0.88279 1.86479 1.33717 1.59313 1.57809 1.21455 0.98017 0.94819 0.85940 1.42617 1.68802 1.24281 1.04288 1.19064 1.27202 0.97320 0.93170 0.92316 1.25487 1.01584 0.98414 0.99935 1.69874 1.49335 1.23658 1.20317 0.85395 0.78101 0.79259 0.78934 1.20005 1.22211 1.18471 1.20614 0.87543 0.85979 0.75124 1.90674 1.15560 1.87878 1.51345 1.21444 0.98944 0.88819 1.07645 1.22469 0.94306 0.80258 1.02824 1.85939 1.36079 1.12837 1.88281 1.18714 0.90226 0.85995 0.94855 1.21648 0.92573 1.01317 1.08709 1.21157 1.01632 0.90140 0.93674 1.21358 0.92197 1.00636 1.06936 1.17473 0.91299 0.79708 1.01262 1.91501 1.83790 1.42874 1.93827 1.20352 1.01797 0.89066 1.10802 0.90111 0.90176 0.89281 0.86687 0.90236 0.77311 0.93576 0.95720 0.80072 0.93279 0.85385 0.86298 0.91720 0.90953 0.83955 0.81972 0.82647 0.83403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.59 10.24 127.77 1.31 1.90 16 2 N -0.61 -10.31 2.83 -846.77 -2.39 -12.71 16 3 C 0.09 1.90 5.15 86.38 0.44 2.34 16 4 C 0.09 2.58 3.27 30.60 0.10 2.68 16 5 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 6 O -0.57 -18.43 12.09 -140.56 -1.70 -20.13 16 7 C 0.12 4.50 5.90 86.38 0.51 5.01 16 8 N -0.75 -35.71 5.35 -343.44 -1.84 -37.55 16 9 C -0.24 -13.70 10.47 84.03 0.88 -12.82 16 10 H 0.06 3.68 8.06 -2.91 -0.02 3.66 16 11 C -0.06 -3.75 5.50 84.86 0.47 -3.28 16 12 N -0.98 -63.50 13.97 21.65 0.30 -63.19 16 13 Si 0.96 46.84 27.74 68.60 1.90 48.74 16 14 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 15 H -0.30 -14.60 7.11 99.48 0.71 -13.90 16 16 H -0.26 -12.02 6.52 99.48 0.65 -11.37 16 17 C 0.52 10.26 7.18 87.66 0.63 10.89 16 18 O -0.57 -15.65 14.35 5.40 0.08 -15.57 16 19 C -0.13 -1.67 4.62 29.85 0.14 -1.54 16 20 C 0.08 1.23 4.03 71.98 0.29 1.52 16 21 O -0.32 -5.49 10.14 -92.44 -0.94 -6.43 16 22 C 0.15 2.60 6.69 22.50 0.15 2.75 16 23 C -0.22 -3.46 9.04 22.37 0.20 -3.25 16 24 C -0.05 -0.60 10.04 22.25 0.22 -0.37 16 25 C -0.19 -2.55 10.02 22.33 0.22 -2.32 16 26 C 0.12 2.02 7.30 22.36 0.16 2.18 16 27 F -0.14 -2.52 17.27 44.97 0.78 -1.74 16 28 C -0.20 -3.41 9.97 22.41 0.22 -3.19 16 29 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.08 0.70 8.07 -2.38 -0.02 0.68 16 31 H 0.09 0.54 6.44 -2.39 -0.02 0.52 16 32 H 0.12 1.74 8.07 -2.38 -0.02 1.72 16 33 H 0.08 1.82 7.42 -2.39 -0.02 1.80 16 34 H 0.38 11.88 8.45 -74.06 -0.63 11.26 16 35 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.37 17.13 5.53 -92.71 -0.51 16.62 16 38 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 39 H 0.13 1.04 8.11 -2.39 -0.02 1.02 16 40 H 0.12 1.27 7.40 -2.39 -0.02 1.25 16 41 H 0.06 1.19 7.60 -2.39 -0.02 1.17 16 42 H 0.07 1.17 7.63 -2.38 -0.02 1.16 16 43 H 0.14 2.05 6.30 -2.91 -0.02 2.03 16 44 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 45 H 0.16 1.38 8.06 -2.91 -0.02 1.35 16 46 H 0.15 2.21 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -77.28 388.01 1.96 -75.32 By element: Atomic # 1 Polarization: 30.95 SS G_CDS: -0.18 Total: 30.77 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: 5.95 Total: 2.49 kcal Atomic # 7 Polarization: -109.52 SS G_CDS: -3.93 Total: -113.45 kcal Atomic # 8 Polarization: -39.57 SS G_CDS: -2.56 Total: -42.13 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 0.78 Total: -1.74 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 1.90 Total: 48.74 kcal Total: -77.28 1.96 -75.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755781823.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.133 kcal (2) G-P(sol) polarization free energy of solvation -77.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds