Wall clock time and date at job start Tue Mar 31 2020 22:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99943 * 2 1 4 4 H 1.48495 * 109.47091 * 275.00057 * 3 2 1 5 5 H 1.48496 * 109.46989 * 34.99963 * 3 2 1 6 6 H 1.48499 * 109.47164 * 155.00122 * 3 2 1 7 7 C 1.38814 * 119.99631 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99854 * 145.34749 * 7 2 1 9 9 N 1.36937 * 120.00210 * 325.34576 * 7 2 1 10 10 C 1.44320 * 116.35326 * 4.67001 * 9 7 2 11 11 C 1.51607 * 113.11261 * 187.25898 * 10 9 7 12 12 C 1.52884 * 111.55433 * 320.91429 * 11 10 9 13 13 H 1.08997 * 112.85799 * 294.19410 * 12 11 10 14 14 C 1.56196 * 106.67443 * 168.35302 * 12 11 10 15 15 N 1.47765 * 104.00615 * 286.46434 * 14 12 11 16 16 C 1.34778 * 125.81896 * 154.05886 * 15 14 12 17 17 O 1.21582 * 120.00207 * 4.99498 * 16 15 14 18 18 C 1.47571 * 119.99718 * 184.99269 * 16 15 14 19 19 C 1.41760 * 120.01528 * 352.10580 * 18 16 15 20 20 C 1.35625 * 119.54069 * 180.02562 * 19 18 16 21 21 C 1.41168 * 119.50862 * 359.97438 * 20 19 18 22 22 N 1.32419 * 132.11595 * 180.38926 * 21 20 19 23 23 C 1.33600 * 109.22346 * 180.09501 * 22 21 20 24 24 C 1.34998 * 108.65930 * 359.56039 * 23 22 21 25 25 N 1.37013 * 107.14270 * 0.26099 * 24 23 22 26 26 C 1.35920 * 132.41970 * 180.02562 * 25 24 23 27 27 C 1.47618 * 108.35971 * 333.79830 * 15 14 12 28 28 C 1.53568 * 106.34106 * 0.86460 * 27 15 14 29 29 H 1.09001 * 108.71257 * 270.18471 * 28 27 15 30 30 C 1.43992 * 116.35308 * 184.65379 * 9 7 2 31 31 H 0.96996 * 120.00271 * 359.97438 * 1 2 3 32 32 H 1.08999 * 108.75701 * 308.19228 * 10 9 7 33 33 H 1.08998 * 108.75725 * 66.32373 * 10 9 7 34 34 H 1.08996 * 109.06483 * 81.45410 * 11 10 9 35 35 H 1.09000 * 109.06552 * 200.45559 * 11 10 9 36 36 H 1.08999 * 110.63235 * 167.80647 * 14 12 11 37 37 H 1.08999 * 110.48569 * 45.04931 * 14 12 11 38 38 H 1.08009 * 120.22963 * 0.04721 * 19 18 16 39 39 H 1.08007 * 120.24251 * 180.02562 * 20 19 18 40 40 H 1.07994 * 125.66662 * 179.82003 * 23 22 21 41 41 H 1.07997 * 126.42955 * 180.22869 * 24 23 22 42 42 H 1.07998 * 119.75334 * 359.97245 * 26 25 24 43 43 H 1.09002 * 110.08355 * 120.08034 * 27 15 14 44 44 H 1.08998 * 110.07778 * 241.59007 * 27 15 14 45 45 H 1.08994 * 108.16001 * 60.77877 * 30 9 7 46 46 H 1.09005 * 107.99529 * 304.09928 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3920 2.1074 -1.3947 5 1 1.5044 2.6198 0.8030 6 1 3.5966 1.4120 0.5917 7 6 2.0102 -1.2022 -0.0005 8 1 2.9465 -1.2850 -0.5324 9 7 1.5077 -2.2832 0.6733 10 6 0.2035 -2.1174 1.2687 11 6 -0.2063 -3.2886 2.1397 12 6 0.2238 -4.6217 1.5271 13 1 -0.2900 -4.8432 0.5917 14 6 0.0243 -5.7077 2.6318 15 7 1.1287 -5.4590 3.5815 16 6 1.1268 -5.7708 4.8927 17 8 0.1933 -6.3867 5.3698 18 6 2.2577 -5.3648 5.7493 19 6 3.4194 -4.7970 5.1681 20 6 4.4533 -4.4277 5.9643 21 6 4.3568 -4.6139 7.3603 22 7 5.1918 -4.3443 8.3521 23 6 4.6346 -4.7131 9.5089 24 6 3.4103 -5.2224 9.2556 25 7 3.2218 -5.1654 7.8997 26 6 2.1858 -5.5358 7.1016 27 6 2.2369 -4.8165 2.8479 28 6 1.7595 -4.6569 1.3970 29 1 2.0347 -5.5513 0.8379 30 6 2.3396 -3.4580 0.7080 31 1 -0.4850 0.8400 0.0004 32 1 0.2085 -1.2131 1.8772 33 1 -0.5322 -1.9977 0.4734 34 1 0.2563 -3.1818 3.1208 35 1 -1.2902 -3.2844 2.2551 36 1 0.1048 -6.7079 2.2062 37 1 -0.9393 -5.5781 3.1246 38 1 3.4805 -4.6591 4.0986 39 1 5.3436 -3.9936 5.5336 40 1 5.0866 -4.6158 10.4849 41 1 2.7108 -5.6036 9.9848 42 1 1.2991 -5.9686 7.5408 43 1 2.4550 -3.8397 3.2796 44 1 3.1248 -5.4478 2.8833 45 1 3.2734 -3.1984 1.2066 46 1 2.5721 -3.7365 -0.3199 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088166326.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:13 Heat of formation + Delta-G solvation = 127.595185 kcal Electronic energy + Delta-G solvation = -29880.599981 eV Core-core repulsion = 25966.939241 eV Total energy + Delta-G solvation = -3913.660740 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -43.08191 -40.76797 -38.73874 -37.11717 -35.86308 -34.07270 -32.72573 -31.80966 -30.85460 -30.17652 -29.14923 -28.05747 -25.97707 -24.69531 -23.61433 -23.15497 -22.10321 -21.99011 -21.52300 -19.98960 -18.54814 -17.92419 -17.44753 -17.23199 -16.30691 -16.10914 -15.91588 -15.82753 -14.89510 -14.81646 -14.69131 -14.44487 -14.26347 -13.92148 -13.80126 -13.58951 -13.35277 -13.10357 -12.86471 -12.45242 -12.41605 -11.95131 -11.85704 -11.77490 -11.37743 -11.29217 -11.20148 -10.67707 -10.52065 -10.42391 -10.37894 -10.17659 -10.15903 -9.84479 -9.76968 -9.66472 -9.17633 -8.73964 -8.19479 -8.13259 -6.91008 -5.83834 -3.07309 0.28054 0.83155 2.13928 2.30679 2.85342 2.90168 3.37599 3.39698 3.48250 3.52077 3.95944 4.11642 4.27222 4.41689 4.46746 4.55158 4.65260 4.73109 4.93167 5.02500 5.11690 5.16127 5.20924 5.22901 5.38002 5.44511 5.53562 5.58433 5.63562 5.70131 5.79926 5.84006 5.85562 6.01300 6.07930 6.13735 6.20178 6.32099 6.45487 6.48442 6.62592 6.66926 6.68863 6.69097 7.34283 7.51589 7.57116 7.75321 7.88186 7.93092 8.36663 9.22614 9.96819 10.20381 11.15707 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012313 B = 0.003318 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.466279 B = 8437.975175 C = 9891.050534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.012 3.988 3 Si 0.877 3.123 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.275 4.275 8 H 0.077 0.923 9 N -0.598 5.598 10 C 0.184 3.816 11 C -0.129 4.129 12 C -0.084 4.084 13 H 0.103 0.897 14 C 0.109 3.891 15 N -0.603 5.603 16 C 0.587 3.413 17 O -0.544 6.544 18 C -0.151 4.151 19 C -0.116 4.116 20 C -0.082 4.082 21 C 0.233 3.767 22 N -0.494 5.494 23 C 0.034 3.966 24 C -0.100 4.100 25 N -0.367 5.367 26 C 0.129 3.871 27 C 0.094 3.906 28 C -0.101 4.101 29 H 0.077 0.923 30 C 0.180 3.820 31 H 0.253 0.747 32 H 0.037 0.963 33 H 0.058 0.942 34 H 0.048 0.952 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.181 0.819 39 H 0.158 0.842 40 H 0.183 0.817 41 H 0.185 0.815 42 H 0.177 0.823 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.018 0.982 46 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.130 -13.591 12.375 18.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.187 4.187 3 Si 0.705 3.295 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.403 4.403 8 H 0.095 0.905 9 N -0.324 5.324 10 C 0.059 3.941 11 C -0.167 4.167 12 C -0.103 4.103 13 H 0.121 0.879 14 C -0.013 4.013 15 N -0.335 5.335 16 C 0.375 3.625 17 O -0.424 6.424 18 C -0.157 4.157 19 C -0.139 4.139 20 C -0.102 4.102 21 C -0.010 4.010 22 N -0.213 5.213 23 C -0.116 4.116 24 C -0.229 4.229 25 N -0.039 5.039 26 C 0.003 3.997 27 C -0.028 4.028 28 C -0.120 4.120 29 H 0.096 0.904 30 C 0.053 3.947 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.197 0.803 39 H 0.176 0.824 40 H 0.200 0.800 41 H 0.202 0.798 42 H 0.194 0.806 43 H 0.106 0.894 44 H 0.098 0.902 45 H 0.036 0.964 46 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 4.244 -13.532 12.760 19.078 hybrid contribution -0.333 0.648 0.308 0.791 sum 3.912 -12.884 13.069 18.764 Atomic orbital electron populations 1.70400 1.05533 1.25561 1.51325 1.24661 0.94934 0.97922 1.01178 0.86666 0.80336 0.84860 0.77607 1.21717 1.21567 1.20534 1.19150 1.04320 0.88183 1.28680 0.90534 1.42862 1.16971 1.10663 1.61938 1.20143 0.86491 0.92182 0.95265 1.21767 1.00210 0.95129 0.99643 1.22336 0.95360 0.95031 0.97586 0.87892 1.22765 0.90173 0.98678 0.89683 1.48423 1.18447 1.59391 1.07272 1.17260 0.85408 0.79294 0.80520 1.90789 1.36929 1.41294 1.73360 1.19289 0.97262 1.06803 0.92354 1.22635 0.91277 0.96068 1.03881 1.20290 1.00985 1.01599 0.87346 1.21269 0.83857 1.00323 0.95579 1.70776 1.29036 1.23922 0.97596 1.22568 0.92134 0.99280 0.97642 1.22766 1.02681 1.15301 0.82148 1.42833 1.13580 1.39708 1.07802 1.21635 0.91440 0.96368 0.90270 1.22747 0.89229 0.97976 0.92807 1.21572 0.96281 1.00300 0.93891 0.90442 1.19215 0.92984 0.85517 0.96979 0.93714 0.94484 0.92370 0.93308 0.92378 0.91319 0.90128 0.80298 0.82426 0.80018 0.79789 0.80582 0.89396 0.90246 0.96398 0.96086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.52 10.21 55.49 0.57 -23.95 16 2 C 0.01 0.33 4.77 -17.43 -0.08 0.24 16 3 Si 0.88 20.93 29.67 -169.99 -5.04 15.89 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.28 -7.16 9.44 -15.06 -0.14 -7.30 16 8 H 0.08 1.96 7.98 -52.49 -0.42 1.54 16 9 N -0.60 -13.68 3.25 -179.59 -0.58 -14.26 16 10 C 0.18 4.14 4.70 -5.91 -0.03 4.11 16 11 C -0.13 -2.24 4.98 -27.50 -0.14 -2.38 16 12 C -0.08 -1.20 3.78 -88.36 -0.33 -1.53 16 13 H 0.10 1.45 8.14 -51.93 -0.42 1.02 16 14 C 0.11 1.38 6.23 -1.63 -0.01 1.37 16 15 N -0.60 -7.83 2.80 -173.42 -0.49 -8.32 16 16 C 0.59 8.13 7.80 -12.45 -0.10 8.03 16 17 O -0.54 -8.86 16.60 5.29 0.09 -8.77 16 18 C -0.15 -1.83 5.83 -105.37 -0.61 -2.45 16 19 C -0.12 -1.28 8.58 -39.17 -0.34 -1.61 16 20 C -0.08 -0.93 10.09 -39.40 -0.40 -1.33 16 21 C 0.23 3.04 7.81 -155.93 -1.22 1.82 16 22 N -0.49 -6.68 11.31 -12.72 -0.14 -6.82 16 23 C 0.03 0.35 11.82 -17.93 -0.21 0.14 16 24 C -0.10 -0.95 11.75 -16.39 -0.19 -1.14 16 25 N -0.37 -4.29 2.93 -62.31 -0.18 -4.47 16 26 C 0.13 1.46 10.49 -16.37 -0.17 1.29 16 27 C 0.09 1.12 3.52 -3.14 -0.01 1.11 16 28 C -0.10 -1.38 2.68 -91.23 -0.24 -1.62 16 29 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 30 C 0.18 3.21 5.64 -6.89 -0.04 3.17 16 31 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 32 H 0.04 0.95 6.96 -51.93 -0.36 0.59 16 33 H 0.06 1.49 6.79 -51.93 -0.35 1.14 16 34 H 0.05 0.86 6.77 -51.93 -0.35 0.51 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.08 1.08 7.98 -51.93 -0.41 0.66 16 38 H 0.18 1.76 2.82 -56.14 -0.16 1.60 16 39 H 0.16 1.48 8.06 -52.48 -0.42 1.06 16 40 H 0.18 1.23 8.06 -52.49 -0.42 0.81 16 41 H 0.19 1.08 8.06 -52.49 -0.42 0.66 16 42 H 0.18 1.73 7.58 -52.49 -0.40 1.33 16 43 H 0.09 1.15 6.40 -51.93 -0.33 0.82 16 44 H 0.08 0.74 6.78 -51.93 -0.35 0.39 16 45 H 0.02 0.32 7.78 -51.93 -0.40 -0.09 16 46 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 359.01 15.07 5.41 5.41 Total: -1.00 -32.20 359.01 -10.70 -42.90 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -6.06 Total: 0.48 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: -4.27 Total: 1.92 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: -0.83 Total: -57.82 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.09 Total: -8.77 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.04 Total: 15.89 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.20 -10.70 -42.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088166326.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.493 kcal (2) G-P(sol) polarization free energy of solvation -32.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds