Wall clock time and date at job start Tue Mar 31 2020 23:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00196 * 2 1 4 4 H 1.48500 * 109.46977 * 270.00427 * 3 2 1 5 5 H 1.48503 * 109.46986 * 30.00365 * 3 2 1 6 6 H 1.48497 * 109.46938 * 150.00213 * 3 2 1 7 7 C 1.38820 * 119.99651 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00314 * 359.97438 * 7 2 1 9 9 N 1.36942 * 119.99552 * 180.02562 * 7 2 1 10 10 C 1.46500 * 119.99851 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47128 * 179.97438 * 10 9 7 12 12 N 1.46505 * 109.47072 * 179.97438 * 11 10 9 13 13 C 1.46498 * 120.00065 * 262.91067 * 12 11 10 14 14 C 1.53002 * 109.46766 * 270.00076 * 13 12 11 15 15 C 1.50701 * 109.46836 * 180.02562 * 14 13 12 16 16 C 1.38246 * 119.99871 * 269.72336 * 15 14 13 17 17 C 1.38226 * 119.99702 * 179.76716 * 16 15 14 18 18 C 1.38243 * 120.00475 * 0.51041 * 17 16 15 19 19 C 1.38232 * 119.99415 * 359.74299 * 18 17 16 20 20 C 1.38229 * 120.00307 * 90.00142 * 15 14 13 21 21 C 1.34769 * 119.99764 * 82.91094 * 12 11 10 22 22 O 1.21518 * 120.00385 * 183.20550 * 21 12 11 23 23 C 1.48156 * 120.00288 * 3.19954 * 21 12 11 24 24 C 1.39441 * 120.09799 * 173.24211 * 23 21 12 25 25 N 1.32075 * 119.87409 * 180.02562 * 24 23 21 26 26 C 1.32140 * 120.07080 * 359.97438 * 25 24 23 27 27 C 1.38733 * 120.19734 * 0.27646 * 26 25 24 28 28 N 1.31806 * 120.12154 * 359.43448 * 27 26 25 29 29 H 0.96998 * 119.99963 * 359.97438 * 1 2 3 30 30 H 0.96998 * 119.99852 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47321 * 59.99617 * 10 9 7 32 32 H 1.09003 * 109.46910 * 299.99848 * 10 9 7 33 33 H 1.09002 * 109.47087 * 59.99774 * 11 10 9 34 34 H 1.09003 * 109.47345 * 299.99881 * 11 10 9 35 35 H 1.09003 * 109.46976 * 29.99641 * 13 12 11 36 36 H 1.08997 * 109.47453 * 150.00192 * 13 12 11 37 37 H 1.08994 * 109.47104 * 299.99795 * 14 13 12 38 38 H 1.08997 * 109.47637 * 60.00333 * 14 13 12 39 39 H 1.07995 * 119.99356 * 359.97438 * 16 15 14 40 40 H 1.08006 * 119.99996 * 180.23288 * 17 16 15 41 41 H 1.07997 * 119.99890 * 179.72482 * 18 17 16 42 42 H 1.08000 * 119.99714 * 179.97438 * 19 18 17 43 43 H 1.08002 * 119.99970 * 359.97438 * 20 15 14 44 44 H 1.08005 * 120.06313 * 0.04183 * 24 23 21 45 45 H 1.08002 * 119.90211 * 180.02562 * 26 25 24 46 46 H 1.07999 * 119.94021 * 179.70101 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0103 -1.2023 -0.0005 8 1 1.4703 -2.1376 -0.0005 9 7 3.3797 -1.2022 0.0000 10 6 4.1122 -2.4710 -0.0011 11 6 5.6164 -2.1914 -0.0009 12 7 6.3489 -3.4602 -0.0014 13 6 6.8506 -4.0169 1.2574 14 6 8.2650 -3.4948 1.5179 15 6 8.7814 -4.0679 2.8125 16 6 8.5687 -3.3936 4.0005 17 6 9.0382 -3.9217 5.1885 18 6 9.7295 -5.1188 5.1875 19 6 9.9467 -5.7904 3.9990 20 6 9.4727 -5.2649 2.8115 21 6 6.5611 -4.1152 -1.1599 22 8 7.1173 -5.1956 -1.1541 23 6 6.1162 -3.5182 -2.4408 24 6 6.4575 -4.1229 -3.6500 25 7 6.0590 -3.5866 -4.7893 26 6 5.3378 -2.4794 -4.7834 27 6 5.0010 -1.8724 -3.5822 28 7 5.3897 -2.4041 -2.4406 29 1 -0.4850 0.8400 0.0004 30 1 3.8646 -0.3622 0.0004 31 1 3.8491 -3.0416 -0.8918 32 1 3.8485 -3.0435 0.8881 33 1 5.8797 -1.6206 0.8896 34 1 5.8797 -1.6191 -0.8904 35 1 6.1956 -3.7151 2.0747 36 1 6.8713 -5.1046 1.1910 37 1 8.9199 -3.7965 0.7006 38 1 8.2444 -2.4070 1.5844 39 1 8.0329 -2.4559 4.0006 40 1 8.8688 -3.3968 6.1171 41 1 10.1002 -5.5291 6.1152 42 1 10.4871 -6.7255 3.9981 43 1 9.6423 -5.7897 1.8829 44 1 7.0464 -5.0283 -3.6550 45 1 5.0130 -2.0434 -5.7166 46 1 4.4154 -0.9649 -3.5824 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162678708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:10 Heat of formation + Delta-G solvation = 57.962673 kcal Electronic energy + Delta-G solvation = -28833.489484 eV Core-core repulsion = 24916.809252 eV Total energy + Delta-G solvation = -3916.680232 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 5.35 seconds Orbital eigenvalues (eV) -42.44324 -40.76628 -40.00029 -37.87105 -36.31223 -35.54017 -34.25271 -33.30871 -32.67383 -31.74985 -30.28605 -29.08690 -26.64502 -25.71697 -25.38989 -24.43616 -23.44814 -23.21082 -22.00139 -21.00821 -19.75760 -18.92481 -18.25251 -17.91932 -17.71737 -17.15887 -16.90301 -16.42318 -16.25322 -15.99447 -15.78463 -15.70526 -15.36887 -15.18530 -14.96523 -14.65604 -14.37169 -14.16688 -14.07015 -13.87211 -13.76778 -13.34703 -13.21561 -13.15797 -12.78175 -12.68084 -12.37773 -12.18925 -12.05879 -11.96218 -11.78362 -11.78051 -11.68316 -11.48542 -10.90443 -10.52694 -10.11229 -9.85378 -9.80242 -9.48924 -9.24827 -7.97467 -5.31531 -0.66946 -0.00364 0.43561 0.51990 1.44120 1.48407 1.54491 1.56543 1.73471 2.54383 2.68403 2.80550 2.90140 3.17997 3.34106 3.37868 3.52471 3.83404 3.88023 3.93624 4.11806 4.13407 4.14458 4.21003 4.21682 4.28351 4.32495 4.40426 4.53112 4.54214 4.59529 4.66336 4.72729 4.87783 4.92696 5.08830 5.14602 5.19440 5.19977 5.38931 5.49741 5.60336 5.64808 5.73132 5.78429 6.07372 6.12621 6.14401 6.25582 6.59627 6.88812 7.12762 7.86337 8.10284 9.24435 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008289 B = 0.003580 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3376.969682 B = 7819.308198 C =10597.752192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.988 5.988 2 C -0.063 4.063 3 Si 0.960 3.040 4 H -0.269 1.269 5 H -0.303 1.303 6 H -0.247 1.247 7 C -0.230 4.230 8 H 0.044 0.956 9 N -0.742 5.742 10 C 0.165 3.835 11 C 0.104 3.896 12 N -0.582 5.582 13 C 0.120 3.880 14 C -0.082 4.082 15 C -0.090 4.090 16 C -0.126 4.126 17 C -0.127 4.127 18 C -0.130 4.130 19 C -0.127 4.127 20 C -0.128 4.128 21 C 0.574 3.426 22 O -0.555 6.555 23 C 0.005 3.995 24 C 0.105 3.895 25 N -0.456 5.456 26 C 0.088 3.912 27 C 0.047 3.953 28 N -0.405 5.405 29 H 0.257 0.743 30 H 0.370 0.630 31 H 0.015 0.985 32 H 0.005 0.995 33 H 0.089 0.911 34 H 0.122 0.878 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.131 0.869 40 H 0.139 0.861 41 H 0.141 0.859 42 H 0.138 0.862 43 H 0.123 0.877 44 H 0.186 0.814 45 H 0.214 0.786 46 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.708 -5.445 0.724 23.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.639 5.639 2 C -0.254 4.254 3 Si 0.786 3.214 4 H -0.195 1.195 5 H -0.230 1.230 6 H -0.171 1.171 7 C -0.361 4.361 8 H 0.062 0.938 9 N -0.388 5.388 10 C 0.037 3.963 11 C -0.019 4.019 12 N -0.312 5.312 13 C -0.002 4.002 14 C -0.121 4.121 15 C -0.091 4.091 16 C -0.144 4.144 17 C -0.145 4.145 18 C -0.148 4.148 19 C -0.145 4.145 20 C -0.146 4.146 21 C 0.361 3.639 22 O -0.434 6.434 23 C -0.135 4.135 24 C -0.054 4.054 25 N -0.170 5.170 26 C -0.073 4.073 27 C -0.116 4.116 28 N -0.123 5.123 29 H 0.066 0.934 30 H 0.203 0.797 31 H 0.033 0.967 32 H 0.023 0.977 33 H 0.107 0.893 34 H 0.139 0.861 35 H 0.107 0.893 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.149 0.851 40 H 0.157 0.843 41 H 0.159 0.841 42 H 0.156 0.844 43 H 0.141 0.859 44 H 0.202 0.798 45 H 0.230 0.770 46 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 22.840 -6.179 0.776 23.674 hybrid contribution -0.490 0.825 0.078 0.963 sum 22.350 -5.353 0.854 22.998 Atomic orbital electron populations 1.69911 1.07462 1.26748 1.59733 1.25529 0.96042 1.01427 1.02411 0.85349 0.78620 0.78842 0.78585 1.19473 1.22988 1.17096 1.18889 0.82629 0.93038 1.41504 0.93797 1.42297 1.02088 1.03569 1.90825 1.20775 0.91039 0.87742 0.96726 1.22225 0.89930 0.84404 1.05361 1.47793 1.53333 1.23560 1.06475 1.21612 0.94804 0.99340 0.84462 1.20817 0.95382 1.01220 0.94636 1.19813 0.98803 0.95656 0.94809 1.21313 1.00262 1.00596 0.92243 1.21457 0.98020 0.96497 0.98534 1.21482 0.98978 0.95525 0.98836 1.21426 0.99996 1.00615 0.92460 1.21272 0.98607 0.95766 0.98983 1.17916 0.78646 0.83977 0.83370 1.90747 1.44643 1.21063 1.86918 1.22073 1.00338 0.95517 0.95549 1.23844 0.95318 0.99208 0.87003 1.68696 1.09450 1.10319 1.28537 1.24705 0.90897 0.90442 1.01305 1.24480 0.97228 1.01532 0.88340 1.68951 1.05539 1.07591 1.30187 0.93387 0.79661 0.96716 0.97660 0.89297 0.86067 0.89263 0.90548 0.91363 0.89773 0.85084 0.84306 0.84100 0.84397 0.85948 0.79754 0.76973 0.78936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -62.22 13.97 21.65 0.30 -61.92 16 2 C -0.06 -3.59 5.50 84.86 0.47 -3.12 16 3 Si 0.96 42.71 27.74 68.60 1.90 44.61 16 4 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 5 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 6 H -0.25 -9.64 6.52 99.48 0.65 -9.00 16 7 C -0.23 -12.78 10.48 84.03 0.88 -11.90 16 8 H 0.04 2.77 8.06 -2.91 -0.02 2.75 16 9 N -0.74 -32.72 5.41 -343.44 -1.86 -34.58 16 10 C 0.16 6.22 5.93 86.38 0.51 6.73 16 11 C 0.10 2.93 5.10 86.38 0.44 3.37 16 12 N -0.58 -15.80 2.49 -824.87 -2.05 -17.86 16 13 C 0.12 2.86 5.38 86.38 0.46 3.32 16 14 C -0.08 -1.68 5.67 29.85 0.17 -1.51 16 15 C -0.09 -1.81 5.13 -19.86 -0.10 -1.92 16 16 C -0.13 -2.35 9.70 22.27 0.22 -2.13 16 17 C -0.13 -2.11 10.05 22.27 0.22 -1.89 16 18 C -0.13 -2.05 10.05 22.27 0.22 -1.83 16 19 C -0.13 -2.15 10.05 22.27 0.22 -1.93 16 20 C -0.13 -2.52 9.70 22.27 0.22 -2.31 16 21 C 0.57 17.00 7.60 86.88 0.66 17.66 16 22 O -0.56 -18.13 15.93 -3.77 -0.06 -18.19 16 23 C 0.00 0.13 6.51 41.89 0.27 0.40 16 24 C 0.11 2.61 10.77 84.95 0.92 3.53 16 25 N -0.46 -10.54 10.49 -194.11 -2.04 -12.57 16 26 C 0.09 1.65 11.23 84.76 0.95 2.60 16 27 C 0.05 1.05 11.22 84.82 0.95 2.00 16 28 N -0.40 -11.17 4.55 -184.32 -0.84 -12.01 16 29 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 30 H 0.37 15.01 5.53 -92.71 -0.51 14.50 16 31 H 0.01 0.61 6.77 -2.39 -0.02 0.60 16 32 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 33 H 0.09 2.22 8.02 -2.39 -0.02 2.20 16 34 H 0.12 3.37 5.24 -2.71 -0.01 3.36 16 35 H 0.09 2.04 8.07 -2.39 -0.02 2.02 16 36 H 0.08 2.00 7.38 -2.39 -0.02 1.99 16 37 H 0.07 1.50 8.08 -2.39 -0.02 1.48 16 38 H 0.08 1.56 8.08 -2.39 -0.02 1.54 16 39 H 0.13 2.13 8.06 -2.91 -0.02 2.11 16 40 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 41 H 0.14 1.53 8.06 -2.91 -0.02 1.50 16 42 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 43 H 0.12 2.32 8.06 -2.91 -0.02 2.29 16 44 H 0.19 4.15 7.66 -2.91 -0.02 4.13 16 45 H 0.21 2.20 8.06 -2.91 -0.02 2.18 16 46 H 0.19 3.71 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -73.18 387.12 3.47 -69.71 By element: Atomic # 1 Polarization: 31.30 SS G_CDS: 0.42 Total: 31.73 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: 7.69 Total: 11.08 kcal Atomic # 7 Polarization: -132.45 SS G_CDS: -6.48 Total: -138.94 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.06 Total: -18.19 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 1.90 Total: 44.61 kcal Total: -73.18 3.47 -69.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162678708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.670 kcal (2) G-P(sol) polarization free energy of solvation -73.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.35 seconds