Wall clock time and date at job start Tue Mar 31 2020 23:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00050 * 2 1 4 4 H 1.48497 * 109.47006 * 239.99813 * 3 2 1 5 5 H 1.48501 * 109.47142 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47096 * 120.00195 * 3 2 1 7 7 C 1.38815 * 120.00028 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00002 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99809 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99901 * 180.02562 * 9 7 2 11 11 H 1.08994 * 109.46963 * 34.99530 * 10 9 7 12 12 C 1.52999 * 109.46938 * 154.99949 * 10 9 7 13 13 N 1.46496 * 109.47432 * 304.99388 * 12 10 9 14 14 C 1.34772 * 120.00456 * 180.02562 * 13 12 10 15 15 O 1.21592 * 119.99682 * 0.02562 * 14 13 12 16 16 C 1.47587 * 120.00135 * 180.02562 * 14 13 12 17 17 C 1.39814 * 120.00060 * 180.02562 * 16 14 13 18 18 C 1.36584 * 119.99026 * 180.02562 * 17 16 14 19 19 C 1.39776 * 120.00768 * 359.96575 * 18 17 16 20 20 C 1.47663 * 119.99568 * 180.02562 * 19 18 17 21 21 C 1.36236 * 126.77608 * 359.97438 * 20 19 18 22 22 N 1.33684 * 107.86183 * 180.02562 * 21 20 19 23 23 C 1.30663 * 109.57259 * 0.02562 * 22 21 20 24 24 N 1.34949 * 109.02961 * 359.97438 * 23 22 21 25 25 H 0.97000 * 126.46000 * 180.02562 * 24 23 22 26 26 C 1.39778 * 120.00608 * 0.28536 * 19 18 17 27 27 C 1.36579 * 120.00553 * 359.48189 * 26 19 18 28 28 C 1.52998 * 109.46798 * 274.99903 * 10 9 7 29 29 C 1.52995 * 117.49943 * 128.74880 * 28 10 9 30 30 C 1.52993 * 117.50223 * 60.08451 * 28 10 9 31 31 H 0.96996 * 119.99612 * 359.97438 * 1 2 3 32 32 H 0.96997 * 120.00083 * 359.97438 * 9 7 2 33 33 H 1.09000 * 109.46850 * 184.99971 * 12 10 9 34 34 H 1.08995 * 109.47180 * 65.00151 * 12 10 9 35 35 H 0.97008 * 119.99724 * 0.02562 * 13 12 10 36 36 H 1.07997 * 120.00718 * 359.97438 * 17 16 14 37 37 H 1.08001 * 119.99605 * 179.97438 * 18 17 16 38 38 H 1.08007 * 126.07325 * 359.97438 * 21 20 19 39 39 H 1.08004 * 125.48331 * 179.97438 * 23 22 21 40 40 H 1.08001 * 119.99955 * 179.74506 * 26 19 18 41 41 H 1.07997 * 120.00642 * 180.28004 * 27 26 19 42 42 H 1.09001 * 115.54956 * 274.41544 * 28 10 9 43 43 H 1.09000 * 117.50176 * 0.02562 * 29 28 10 44 44 H 1.09004 * 117.50011 * 145.01751 * 29 28 10 45 45 H 1.09001 * 117.50374 * 214.97930 * 30 28 10 46 46 H 1.09002 * 117.50238 * 359.97438 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0016 10 6 2.0581 -3.6569 -0.0016 11 1 2.9683 -3.5508 0.5885 12 6 1.1803 -4.7524 0.6069 13 7 0.7328 -4.3365 1.9383 14 6 -0.0567 -5.1489 2.6683 15 8 -0.3972 -6.2275 2.2219 16 6 -0.5080 -4.7296 4.0094 17 6 -1.3267 -5.5727 4.7669 18 6 -1.7446 -5.1841 6.0079 19 6 -1.3534 -3.9441 6.5208 20 6 -1.8049 -3.5246 7.8626 21 6 -2.6000 -4.2314 8.7136 22 7 -2.7705 -3.4991 9.8190 23 6 -2.1225 -2.3707 9.7007 24 7 -1.5062 -2.3408 8.5006 25 1 -0.9563 -1.6215 8.1527 26 6 -0.5393 -3.0989 5.7614 27 6 -0.1172 -3.4890 4.5224 28 6 2.4230 -4.0350 -1.4385 29 6 3.8833 -4.3884 -1.7268 30 6 3.3043 -3.0612 -2.2232 31 1 -0.4849 0.8400 0.0004 32 1 0.3556 -2.3881 -0.0016 33 1 1.7552 -5.6749 0.6886 34 1 0.3133 -4.9200 -0.0320 35 1 1.0048 -3.4761 2.2946 36 1 -1.6292 -6.5306 4.3706 37 1 -2.3773 -5.8351 6.5929 38 1 -3.0190 -5.2094 8.5279 39 1 -2.0860 -1.5878 10.4439 40 1 -0.2405 -2.1391 6.1561 41 1 0.5155 -2.8379 3.9376 42 1 1.6555 -4.5765 -1.9915 43 1 4.5841 -4.3520 -0.8927 44 1 4.0767 -5.1623 -2.4697 45 1 3.1170 -2.9624 -3.2924 46 1 3.6239 -2.1509 -1.7159 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480056131.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:33 Heat of formation + Delta-G solvation = 83.074442 kcal Electronic energy + Delta-G solvation = -28075.208556 eV Core-core repulsion = 24159.617252 eV Total energy + Delta-G solvation = -3915.591304 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.29813 -40.06216 -38.42059 -37.47864 -34.74464 -33.51289 -33.12493 -32.37714 -31.24117 -30.87140 -28.91199 -27.74817 -24.58702 -23.59509 -23.06030 -22.38446 -21.74660 -21.40453 -21.01678 -20.21254 -19.59427 -18.90148 -17.88698 -17.08877 -16.02311 -15.60924 -15.33475 -15.24654 -14.97597 -14.95080 -14.80650 -14.37241 -14.11664 -13.94897 -13.87072 -13.62880 -13.51122 -13.21147 -12.94056 -12.78802 -12.23207 -12.10117 -11.43111 -11.25319 -11.17841 -10.93614 -10.91266 -10.77086 -10.43922 -10.36919 -10.22260 -9.99572 -9.83110 -9.77287 -9.54283 -9.35103 -9.24257 -9.04999 -8.71557 -8.05355 -7.12520 -5.88723 -3.18689 0.37313 1.27882 1.89371 2.72240 2.77775 3.14399 3.32704 3.38761 3.40030 3.46538 3.89951 4.24997 4.35858 4.48920 4.53057 4.54723 4.71077 4.91436 5.03000 5.12771 5.15775 5.20515 5.28865 5.40684 5.46677 5.54469 5.58378 5.70429 5.72137 5.81408 5.84828 5.94998 6.02597 6.12423 6.13328 6.26415 6.30009 6.34749 6.37931 6.50058 6.54705 6.65978 6.72100 6.83855 6.92903 6.99760 7.57429 7.69954 7.85254 8.27839 8.47413 9.40074 9.94107 10.30475 11.32720 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010919 B = 0.002729 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.809963 B =10259.031554 C =12378.823307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.008 4.008 3 Si 0.902 3.098 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.717 5.717 10 C 0.192 3.808 11 H 0.055 0.945 12 C 0.118 3.882 13 N -0.706 5.706 14 C 0.553 3.447 15 O -0.550 6.550 16 C -0.128 4.128 17 C -0.053 4.053 18 C -0.113 4.113 19 C 0.007 3.993 20 C 0.011 3.989 21 C 0.003 3.997 22 N -0.496 5.496 23 C 0.194 3.806 24 N -0.563 5.563 25 H 0.423 0.577 26 C -0.126 4.126 27 C -0.070 4.070 28 C -0.159 4.159 29 C -0.196 4.196 30 C -0.156 4.156 31 H 0.256 0.744 32 H 0.386 0.614 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.409 0.591 36 H 0.141 0.859 37 H 0.134 0.866 38 H 0.175 0.825 39 H 0.211 0.789 40 H 0.121 0.879 41 H 0.136 0.864 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.079 -6.895 13.577 15.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.205 4.205 3 Si 0.733 3.267 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.358 5.358 10 C 0.082 3.918 11 H 0.073 0.927 12 C -0.006 4.006 13 N -0.357 5.357 14 C 0.340 3.660 15 O -0.430 6.430 16 C -0.131 4.131 17 C -0.072 4.072 18 C -0.132 4.132 19 C 0.005 3.995 20 C -0.104 4.104 21 C -0.147 4.147 22 N -0.214 5.214 23 C -0.089 4.089 24 N -0.166 5.166 25 H 0.261 0.739 26 C -0.145 4.145 27 C -0.089 4.089 28 C -0.181 4.181 29 C -0.234 4.234 30 C -0.193 4.193 31 H 0.066 0.934 32 H 0.220 0.780 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.247 0.753 36 H 0.158 0.842 37 H 0.151 0.849 38 H 0.192 0.808 39 H 0.227 0.773 40 H 0.139 0.861 41 H 0.154 0.846 42 H 0.109 0.891 43 H 0.105 0.895 44 H 0.099 0.901 45 H 0.098 0.902 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.533 -7.721 13.970 15.970 hybrid contribution 1.031 2.235 -0.941 2.635 sum 0.498 -5.486 13.029 14.146 Atomic orbital electron populations 1.69650 1.05026 1.25835 1.57030 1.24717 0.95420 0.97531 1.02808 0.86354 0.78589 0.83843 0.77876 1.21230 1.21759 1.21348 1.19108 0.90785 0.83834 1.43284 0.91194 1.42458 1.05827 0.99388 1.88124 1.20065 0.94312 0.86118 0.91331 0.92682 1.21631 0.98707 0.97625 0.82624 1.45909 1.50197 1.21695 1.17946 1.18164 0.78714 0.84356 0.84795 1.90747 1.57397 1.22542 1.72318 1.20135 1.01641 0.95933 0.95386 1.20944 0.93955 0.99437 0.92818 1.20753 1.01073 0.95341 0.96017 1.18081 0.96784 0.94641 0.89948 1.19718 1.06170 0.89054 0.95440 1.22461 1.01099 1.00848 0.90284 1.70181 1.22299 1.03790 1.25137 1.25056 0.96598 0.99001 0.88289 1.43354 1.40630 1.16740 1.15862 0.73877 1.20741 0.99254 0.99420 0.95091 1.21107 0.97638 0.94943 0.95164 1.23018 0.92202 1.03112 0.99758 1.22964 0.97254 0.99825 1.03357 1.22782 1.03374 0.94027 0.99132 0.93402 0.78022 0.91438 0.91583 0.75304 0.84165 0.84856 0.80815 0.77269 0.86104 0.84597 0.89087 0.89542 0.90055 0.90205 0.87722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.92 13.06 55.49 0.72 -25.19 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 3 Si 0.90 20.81 29.55 -169.99 -5.02 15.79 16 4 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.24 -5.85 8.63 -15.06 -0.13 -5.98 16 8 H 0.07 1.67 6.91 -52.49 -0.36 1.31 16 9 N -0.72 -15.73 4.54 -53.43 -0.24 -15.98 16 10 C 0.19 3.43 2.70 -67.93 -0.18 3.24 16 11 H 0.06 0.99 7.84 -51.93 -0.41 0.58 16 12 C 0.12 1.96 5.21 -4.04 -0.02 1.93 16 13 N -0.71 -11.43 5.34 -61.34 -0.33 -11.75 16 14 C 0.55 9.14 7.76 -12.45 -0.10 9.05 16 15 O -0.55 -10.52 16.33 5.28 0.09 -10.44 16 16 C -0.13 -1.79 5.88 -104.91 -0.62 -2.40 16 17 C -0.05 -0.65 9.53 -39.59 -0.38 -1.02 16 18 C -0.11 -1.18 9.52 -39.60 -0.38 -1.55 16 19 C 0.01 0.08 5.88 -104.90 -0.62 -0.54 16 20 C 0.01 0.11 6.96 -82.08 -0.57 -0.46 16 21 C 0.00 0.03 11.28 -17.47 -0.20 -0.17 16 22 N -0.50 -5.51 11.22 -14.38 -0.16 -5.67 16 23 C 0.19 1.55 13.02 -90.32 -1.18 0.38 16 24 N -0.56 -4.40 6.06 -10.65 -0.06 -4.47 16 25 H 0.42 2.18 8.20 -40.82 -0.33 1.85 16 26 C -0.13 -1.38 9.65 -39.61 -0.38 -1.76 16 27 C -0.07 -0.88 9.48 -39.59 -0.38 -1.25 16 28 C -0.16 -2.69 5.36 -90.63 -0.49 -3.17 16 29 C -0.20 -2.88 10.18 -26.70 -0.27 -3.16 16 30 C -0.16 -2.69 9.78 -26.70 -0.26 -2.95 16 31 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 32 H 0.39 9.35 7.80 -40.82 -0.32 9.03 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.41 6.56 6.15 -40.82 -0.25 6.31 16 36 H 0.14 1.67 7.64 -52.49 -0.40 1.27 16 37 H 0.13 1.04 7.04 -52.49 -0.37 0.68 16 38 H 0.17 1.45 7.30 -52.48 -0.38 1.07 16 39 H 0.21 0.81 8.06 -52.48 -0.42 0.38 16 40 H 0.12 1.04 7.27 -52.49 -0.38 0.66 16 41 H 0.14 1.70 6.38 -52.49 -0.34 1.36 16 42 H 0.09 1.51 8.11 -51.93 -0.42 1.09 16 43 H 0.09 1.22 8.05 -51.93 -0.42 0.80 16 44 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 46 H 0.10 2.02 6.23 -51.93 -0.32 1.70 16 LS Contribution 387.59 15.07 5.84 5.84 Total: -1.00 -31.70 387.59 -11.36 -43.05 By element: Atomic # 1 Polarization: 24.89 SS G_CDS: -5.95 Total: 18.93 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -6.23 Total: -10.13 kcal Atomic # 7 Polarization: -62.99 SS G_CDS: -0.07 Total: -63.06 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.44 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.70 -11.36 -43.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480056131.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.129 kcal (2) G-P(sol) polarization free energy of solvation -31.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds