Wall clock time and date at job start Tue Mar 31 2020 23:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86798 * 120.00211 * 2 1 4 4 H 1.48503 * 109.47221 * 240.00319 * 3 2 1 5 5 H 1.48493 * 109.47080 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47171 * 120.00554 * 3 2 1 7 7 C 1.38816 * 119.99905 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00113 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00101 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00245 * 179.97438 * 9 7 2 11 11 H 1.08999 * 110.54219 * 32.37325 * 10 9 7 12 12 C 1.54953 * 110.08437 * 270.08778 * 10 9 7 13 13 C 1.56409 * 105.61994 * 232.86301 * 12 10 9 14 14 C 1.51000 * 101.59217 * 335.52405 * 13 12 10 15 15 H 1.08999 * 110.04397 * 290.65143 * 14 13 12 16 16 C 1.50341 * 125.58435 * 156.04054 * 14 13 12 17 17 N 1.49220 * 104.85643 * 215.64635 * 16 14 13 18 18 C 1.34769 * 126.05752 * 187.33483 * 17 16 14 19 19 O 1.21653 * 120.00084 * 175.78177 * 18 17 16 20 20 C 1.47052 * 120.00025 * 355.78091 * 18 17 16 21 21 C 1.37603 * 119.93326 * 353.15939 * 20 18 17 22 22 C 1.39940 * 120.01426 * 179.73020 * 21 20 18 23 23 C 1.36207 * 119.91880 * 0.56205 * 22 21 20 24 24 C 1.40919 * 119.80027 * 359.70944 * 23 22 21 25 25 N 1.32581 * 132.18762 * 180.02562 * 24 23 22 26 26 C 1.33234 * 109.14217 * 179.97438 * 25 24 23 27 27 C 1.35457 * 108.57423 * 359.97438 * 26 25 24 28 28 N 1.36254 * 107.17981 * 0.02562 * 27 26 25 29 29 C 1.49693 * 107.88157 * 7.07257 * 17 16 14 30 30 C 1.50300 * 110.49208 * 155.00095 * 10 9 7 31 31 H 1.09002 * 110.00252 * 39.02488 * 30 10 9 32 32 H 0.97003 * 120.00201 * 359.97438 * 1 2 3 33 33 H 0.97003 * 119.99530 * 0.02562 * 9 7 2 34 34 H 1.08994 * 109.81086 * 114.07647 * 12 10 9 35 35 H 1.08998 * 110.78514 * 352.15869 * 12 10 9 36 36 H 1.09001 * 110.99997 * 217.45434 * 13 12 10 37 37 H 1.08996 * 111.03822 * 93.61373 * 13 12 10 38 38 H 1.08998 * 110.35934 * 96.80193 * 16 14 13 39 39 H 1.08994 * 110.36089 * 334.49225 * 16 14 13 40 40 H 1.08001 * 119.98622 * 0.02562 * 21 20 18 41 41 H 1.08001 * 120.03829 * 180.26988 * 22 21 20 42 42 H 1.08005 * 120.10234 * 179.68717 * 23 22 21 43 43 H 1.07993 * 125.71813 * 179.97438 * 26 25 24 44 44 H 1.07999 * 126.41298 * 179.97438 * 27 26 25 45 45 H 1.09002 * 110.84444 * 143.33030 * 29 17 16 46 46 H 1.08999 * 110.84540 * 266.73263 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0017 11 1 2.9961 -3.5574 0.5442 12 6 2.3248 -4.1160 -1.4574 13 6 1.7842 -5.5812 -1.5427 14 6 1.8582 -6.0165 -0.0987 15 1 2.8992 -6.1209 0.2071 16 6 1.0336 -7.1049 0.5303 17 7 0.7635 -6.6269 1.9178 18 6 0.1748 -7.3365 2.9008 19 8 0.0773 -6.8639 4.0175 20 6 -0.3498 -8.6819 2.6234 21 6 -0.3671 -9.1596 1.3330 22 6 -0.8607 -10.4420 1.0679 23 6 -1.3343 -11.2117 2.0869 24 6 -1.3192 -10.7148 3.4054 25 7 -1.7090 -11.2391 4.5591 26 6 -1.4834 -10.3619 5.5361 27 6 -0.9347 -9.2470 4.9968 28 7 -0.8277 -9.4597 3.6552 29 6 1.2682 -5.2218 2.0263 30 6 1.2164 -4.7508 0.5935 31 1 0.1799 -4.6389 0.2751 32 1 -0.4850 0.8401 0.0004 33 1 0.3554 -2.3880 -0.0005 34 1 3.3955 -4.0978 -1.6600 35 1 1.7971 -3.4785 -2.1668 36 1 2.4268 -6.1987 -2.1702 37 1 0.7558 -5.5984 -1.9036 38 1 1.5937 -8.0397 0.5535 39 1 0.0987 -7.2354 -0.0146 40 1 0.0048 -8.5465 0.5255 41 1 -0.8704 -10.8189 0.0558 42 1 -1.7206 -12.1999 1.8849 43 1 -1.7013 -10.5140 6.5828 44 1 -0.6385 -8.3558 5.5302 45 1 0.6116 -4.6213 2.6560 46 1 2.2895 -5.2048 2.4068 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026311968.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:58 Heat of formation + Delta-G solvation = 118.459568 kcal Electronic energy + Delta-G solvation = -29255.964496 eV Core-core repulsion = 25341.907606 eV Total energy + Delta-G solvation = -3914.056890 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 2.93 seconds Orbital eigenvalues (eV) -43.07126 -40.91625 -38.95382 -37.42294 -35.67088 -33.78962 -33.55631 -31.43221 -30.98316 -29.64093 -28.82583 -28.63455 -25.67513 -25.27397 -23.35525 -22.99621 -22.87360 -22.16148 -20.47933 -19.97214 -19.32489 -17.89260 -17.73787 -17.16779 -16.65391 -16.43304 -16.23737 -15.85252 -15.32492 -15.00014 -14.88902 -14.29118 -14.06499 -13.98872 -13.86199 -13.71630 -13.13140 -13.02643 -12.91305 -12.61297 -12.28397 -12.00862 -11.92219 -11.67364 -11.48691 -11.32799 -11.14913 -10.88370 -10.82986 -10.58674 -10.43027 -10.28799 -10.24215 -10.13963 -9.88640 -9.66880 -9.11057 -9.01766 -8.95590 -8.11589 -7.05409 -5.83763 -3.13525 -0.01789 1.00071 1.99126 2.27013 2.74371 2.86334 3.27148 3.39424 3.44423 3.45309 3.72292 3.95297 4.05021 4.27764 4.41522 4.50294 4.62239 4.65676 4.84068 4.97139 5.06412 5.13681 5.18880 5.25680 5.29572 5.38647 5.45275 5.47359 5.53382 5.64906 5.66921 5.72334 5.74914 5.80240 5.86378 5.95317 5.99276 6.13672 6.16867 6.23636 6.36275 6.39955 6.48336 6.67833 6.70995 6.94399 7.13087 7.60743 7.63206 7.73531 8.34078 9.45641 10.01065 10.35240 11.38441 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020290 B = 0.002484 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.669209 B =11268.729506 C =12201.390923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.011 4.011 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.244 4.244 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.196 3.804 11 H 0.057 0.943 12 C -0.142 4.142 13 C -0.097 4.097 14 C -0.133 4.133 15 H 0.086 0.914 16 C 0.105 3.895 17 N -0.609 5.609 18 C 0.575 3.425 19 O -0.529 6.529 20 C 0.039 3.961 21 C -0.123 4.123 22 C -0.120 4.120 23 C -0.048 4.048 24 C 0.199 3.801 25 N -0.485 5.485 26 C 0.022 3.978 27 C -0.065 4.065 28 N -0.336 5.336 29 C 0.133 3.867 30 C -0.118 4.118 31 H 0.085 0.915 32 H 0.256 0.744 33 H 0.384 0.616 34 H 0.056 0.944 35 H 0.076 0.924 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.186 0.814 41 H 0.150 0.850 42 H 0.154 0.846 43 H 0.184 0.816 44 H 0.193 0.807 45 H 0.088 0.912 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.750 -22.686 -0.361 22.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.207 4.207 3 Si 0.737 3.263 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.375 4.375 8 H 0.088 0.912 9 N -0.361 5.361 10 C 0.085 3.915 11 H 0.075 0.925 12 C -0.183 4.183 13 C -0.136 4.136 14 C -0.152 4.152 15 H 0.104 0.896 16 C -0.016 4.016 17 N -0.343 5.343 18 C 0.363 3.637 19 O -0.407 6.407 20 C -0.067 4.067 21 C -0.144 4.144 22 C -0.144 4.144 23 C -0.069 4.069 24 C -0.042 4.042 25 N -0.205 5.205 26 C -0.131 4.131 27 C -0.198 4.198 28 N -0.008 5.008 29 C 0.013 3.987 30 C -0.138 4.138 31 H 0.103 0.897 32 H 0.066 0.934 33 H 0.219 0.781 34 H 0.074 0.926 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.202 0.798 41 H 0.168 0.832 42 H 0.172 0.828 43 H 0.201 0.799 44 H 0.210 0.790 45 H 0.106 0.894 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.440 -23.020 0.488 23.029 hybrid contribution 0.420 1.708 -0.009 1.759 sum 0.859 -21.312 0.479 21.335 Atomic orbital electron populations 1.69640 1.05137 1.25915 1.57257 1.24747 0.95490 0.97745 1.02729 0.86286 0.78563 0.83565 0.77865 1.21235 1.21700 1.21229 1.19185 0.90958 0.84066 1.43259 0.91178 1.42494 1.05676 0.99629 1.88302 1.19941 0.94173 0.85035 0.92375 0.92496 1.23653 1.00262 0.93769 1.00611 1.21768 1.01463 0.97383 0.92947 1.22263 1.00063 0.94726 0.98152 0.89582 1.21795 0.99625 0.97822 0.82339 1.49602 1.58105 1.15538 1.11087 1.17088 0.78765 0.83608 0.84277 1.90831 1.57992 1.70702 1.21193 1.20058 1.05382 0.93468 0.87800 1.22855 0.98568 0.97553 0.95437 1.21022 0.99559 0.93631 1.00148 1.20482 0.98063 1.00965 0.87352 1.21021 1.03691 0.83365 0.96122 1.70642 1.23006 1.30149 0.96683 1.22615 1.01135 0.89875 0.99438 1.23171 1.11342 1.04171 0.81164 1.42571 1.38163 1.13166 1.06916 1.21601 1.00067 0.79133 0.97892 1.22563 1.01895 0.95939 0.93416 0.89686 0.93376 0.78142 0.92564 0.90524 0.91920 0.91431 0.89879 0.89747 0.79777 0.83197 0.82824 0.79924 0.79003 0.89399 0.90477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.24 13.06 55.49 0.72 -26.52 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 3 Si 0.91 21.72 29.55 -169.99 -5.02 16.70 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.24 -6.38 9.96 -15.06 -0.15 -6.53 16 8 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 9 N -0.72 -16.57 5.07 -53.73 -0.27 -16.84 16 10 C 0.20 3.36 3.35 -68.24 -0.23 3.13 16 11 H 0.06 1.01 8.09 -51.93 -0.42 0.58 16 12 C -0.14 -2.08 6.69 -23.87 -0.16 -2.24 16 13 C -0.10 -1.02 6.72 -25.90 -0.17 -1.19 16 14 C -0.13 -1.34 2.75 -90.27 -0.25 -1.59 16 15 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 16 C 0.11 0.90 4.68 -3.86 -0.02 0.89 16 17 N -0.61 -7.44 3.43 -175.72 -0.60 -8.05 16 18 C 0.57 8.10 7.81 -12.69 -0.10 8.00 16 19 O -0.53 -9.12 15.01 5.23 0.08 -9.04 16 20 C 0.04 0.48 6.78 -81.86 -0.55 -0.08 16 21 C -0.12 -1.05 8.66 -39.18 -0.34 -1.39 16 22 C -0.12 -0.83 10.04 -39.67 -0.40 -1.23 16 23 C -0.05 -0.43 10.09 -39.30 -0.40 -0.82 16 24 C 0.20 2.52 7.80 -156.02 -1.22 1.31 16 25 N -0.48 -6.59 11.31 -12.76 -0.14 -6.74 16 26 C 0.02 0.26 11.83 -17.94 -0.21 0.05 16 27 C -0.06 -0.85 10.80 -16.58 -0.18 -1.03 16 28 N -0.34 -4.49 2.97 -58.74 -0.17 -4.67 16 29 C 0.13 1.85 6.80 -3.31 -0.02 1.83 16 30 C -0.12 -1.65 2.46 -90.33 -0.22 -1.87 16 31 H 0.08 1.29 7.94 -51.93 -0.41 0.88 16 32 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.38 9.54 7.69 -40.82 -0.31 9.23 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.08 1.32 7.98 -51.93 -0.41 0.90 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.54 7.06 -51.93 -0.37 0.17 16 39 H 0.08 0.60 6.61 -51.93 -0.34 0.25 16 40 H 0.19 1.15 2.75 -56.08 -0.15 1.00 16 41 H 0.15 0.49 8.06 -52.49 -0.42 0.07 16 42 H 0.15 0.96 8.06 -52.48 -0.42 0.54 16 43 H 0.18 1.55 8.06 -52.49 -0.42 1.13 16 44 H 0.19 2.50 6.68 -52.49 -0.35 2.15 16 45 H 0.09 1.41 8.13 -51.93 -0.42 0.99 16 46 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 368.36 15.07 5.55 5.55 Total: -1.00 -33.39 368.36 -10.70 -44.09 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -6.12 Total: 8.67 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -4.72 Total: -3.17 kcal Atomic # 7 Polarization: -62.34 SS G_CDS: -0.47 Total: -62.81 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.08 Total: -9.04 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.39 -10.70 -44.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026311968.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.553 kcal (2) G-P(sol) polarization free energy of solvation -33.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.94 seconds