Wall clock time and date at job start Tue Mar 31 2020 23:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86798 * 120.00211 * 2 1 4 4 H 1.48503 * 109.47221 * 240.00319 * 3 2 1 5 5 H 1.48493 * 109.47080 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47171 * 120.00554 * 3 2 1 7 7 C 1.38816 * 119.99905 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00113 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00101 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00245 * 179.97438 * 9 7 2 11 11 H 1.08999 * 110.54219 * 32.37325 * 10 9 7 12 12 C 1.54953 * 110.08437 * 270.08778 * 10 9 7 13 13 C 1.56409 * 105.61994 * 232.86301 * 12 10 9 14 14 C 1.51000 * 101.59217 * 335.52405 * 13 12 10 15 15 H 1.08999 * 110.04397 * 290.65143 * 14 13 12 16 16 C 1.50341 * 125.58435 * 156.04054 * 14 13 12 17 17 N 1.49220 * 104.85643 * 215.64635 * 16 14 13 18 18 C 1.34769 * 126.05752 * 187.33483 * 17 16 14 19 19 O 1.21653 * 120.00084 * 175.78177 * 18 17 16 20 20 C 1.47052 * 120.00025 * 355.78091 * 18 17 16 21 21 C 1.37603 * 119.93326 * 353.15939 * 20 18 17 22 22 C 1.39940 * 120.01426 * 179.73020 * 21 20 18 23 23 C 1.36207 * 119.91880 * 0.56205 * 22 21 20 24 24 C 1.40919 * 119.80027 * 359.70944 * 23 22 21 25 25 N 1.32581 * 132.18762 * 180.02562 * 24 23 22 26 26 C 1.33234 * 109.14217 * 179.97438 * 25 24 23 27 27 C 1.35457 * 108.57423 * 359.97438 * 26 25 24 28 28 N 1.36254 * 107.17981 * 0.02562 * 27 26 25 29 29 C 1.49693 * 107.88157 * 7.07257 * 17 16 14 30 30 C 1.50300 * 110.49208 * 155.00095 * 10 9 7 31 31 H 1.09002 * 110.00252 * 39.02488 * 30 10 9 32 32 H 0.97003 * 120.00201 * 359.97438 * 1 2 3 33 33 H 0.97003 * 119.99530 * 0.02562 * 9 7 2 34 34 H 1.08994 * 109.81086 * 114.07647 * 12 10 9 35 35 H 1.08998 * 110.78514 * 352.15869 * 12 10 9 36 36 H 1.09001 * 110.99997 * 217.45434 * 13 12 10 37 37 H 1.08996 * 111.03822 * 93.61373 * 13 12 10 38 38 H 1.08998 * 110.35934 * 96.80193 * 16 14 13 39 39 H 1.08994 * 110.36089 * 334.49225 * 16 14 13 40 40 H 1.08001 * 119.98622 * 0.02562 * 21 20 18 41 41 H 1.08001 * 120.03829 * 180.26988 * 22 21 20 42 42 H 1.08005 * 120.10234 * 179.68717 * 23 22 21 43 43 H 1.07993 * 125.71813 * 179.97438 * 26 25 24 44 44 H 1.07999 * 126.41298 * 179.97438 * 27 26 25 45 45 H 1.09002 * 110.84444 * 143.33030 * 29 17 16 46 46 H 1.08999 * 110.84540 * 266.73263 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0017 11 1 2.9961 -3.5574 0.5442 12 6 2.3248 -4.1160 -1.4574 13 6 1.7842 -5.5812 -1.5427 14 6 1.8582 -6.0165 -0.0987 15 1 2.8992 -6.1209 0.2071 16 6 1.0336 -7.1049 0.5303 17 7 0.7635 -6.6269 1.9178 18 6 0.1748 -7.3365 2.9008 19 8 0.0773 -6.8639 4.0175 20 6 -0.3498 -8.6819 2.6234 21 6 -0.3671 -9.1596 1.3330 22 6 -0.8607 -10.4420 1.0679 23 6 -1.3343 -11.2117 2.0869 24 6 -1.3192 -10.7148 3.4054 25 7 -1.7090 -11.2391 4.5591 26 6 -1.4834 -10.3619 5.5361 27 6 -0.9347 -9.2470 4.9968 28 7 -0.8277 -9.4597 3.6552 29 6 1.2682 -5.2218 2.0263 30 6 1.2164 -4.7508 0.5935 31 1 0.1799 -4.6389 0.2751 32 1 -0.4850 0.8401 0.0004 33 1 0.3554 -2.3880 -0.0005 34 1 3.3955 -4.0978 -1.6600 35 1 1.7971 -3.4785 -2.1668 36 1 2.4268 -6.1987 -2.1702 37 1 0.7558 -5.5984 -1.9036 38 1 1.5937 -8.0397 0.5535 39 1 0.0987 -7.2354 -0.0146 40 1 0.0048 -8.5465 0.5255 41 1 -0.8704 -10.8189 0.0558 42 1 -1.7206 -12.1999 1.8849 43 1 -1.7013 -10.5140 6.5828 44 1 -0.6385 -8.3558 5.5302 45 1 0.6116 -4.6213 2.6560 46 1 2.2895 -5.2048 2.4068 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026311968.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:52 Heat of formation + Delta-G solvation = 97.336557 kcal Electronic energy + Delta-G solvation = -29256.880458 eV Core-core repulsion = 25341.907606 eV Total energy + Delta-G solvation = -3914.972853 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 6.08 seconds Orbital eigenvalues (eV) -43.91936 -41.93340 -40.03703 -38.23563 -36.96041 -35.18152 -34.58999 -32.70206 -32.31379 -30.55005 -30.06425 -29.53115 -27.09268 -26.16526 -24.91023 -24.10229 -23.70755 -23.08002 -21.50862 -20.92859 -20.52653 -19.17043 -18.73009 -18.53235 -17.70131 -17.37256 -17.19628 -16.57988 -16.52845 -16.27640 -15.96127 -15.64430 -15.39065 -15.11157 -14.91023 -14.61024 -14.46532 -14.23052 -13.88575 -13.38976 -13.32726 -13.18868 -13.10964 -12.82979 -12.79857 -12.52615 -12.46685 -12.17710 -12.12733 -12.07002 -11.78796 -11.56866 -11.38528 -11.33965 -11.14170 -10.98846 -10.87597 -9.99023 -9.94489 -8.98144 -8.95441 -7.93581 -5.20936 -0.79001 0.24740 1.10192 1.34377 1.46995 1.49093 1.54939 1.83381 1.92972 2.48050 2.56611 2.81742 3.08476 3.26684 3.40795 3.52729 3.67699 3.72289 3.87812 3.98963 4.04304 4.17502 4.24668 4.34506 4.38686 4.39127 4.44573 4.50568 4.54343 4.62006 4.68022 4.77235 4.84454 4.87447 4.92286 4.95249 4.99845 5.06924 5.13732 5.28939 5.39144 5.42839 5.49595 5.55733 5.56090 5.67274 5.86421 6.17647 6.28978 6.70729 6.73874 7.35011 8.12882 8.33491 9.29687 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020290 B = 0.002484 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.669209 B =11268.729506 C =12201.390923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.077 4.077 3 Si 0.967 3.033 4 H -0.276 1.276 5 H -0.300 1.300 6 H -0.281 1.281 7 C -0.235 4.235 8 H 0.076 0.924 9 N -0.736 5.736 10 C 0.186 3.814 11 H 0.049 0.951 12 C -0.138 4.138 13 C -0.082 4.082 14 C -0.106 4.106 15 H 0.096 0.904 16 C 0.100 3.900 17 N -0.605 5.605 18 C 0.568 3.432 19 O -0.579 6.579 20 C -0.002 4.002 21 C -0.092 4.092 22 C -0.099 4.099 23 C -0.055 4.055 24 C 0.185 3.815 25 N -0.515 5.515 26 C 0.022 3.978 27 C -0.097 4.097 28 N -0.345 5.345 29 C 0.135 3.865 30 C -0.123 4.123 31 H 0.071 0.929 32 H 0.249 0.751 33 H 0.371 0.629 34 H 0.066 0.934 35 H 0.047 0.953 36 H 0.099 0.901 37 H 0.074 0.926 38 H 0.122 0.878 39 H 0.112 0.888 40 H 0.214 0.786 41 H 0.204 0.796 42 H 0.182 0.818 43 H 0.207 0.793 44 H 0.179 0.821 45 H 0.051 0.949 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.989 -26.053 -3.539 26.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.269 4.269 3 Si 0.797 3.203 4 H -0.202 1.202 5 H -0.226 1.226 6 H -0.208 1.208 7 C -0.367 4.367 8 H 0.094 0.906 9 N -0.375 5.375 10 C 0.077 3.923 11 H 0.067 0.933 12 C -0.179 4.179 13 C -0.120 4.120 14 C -0.125 4.125 15 H 0.114 0.886 16 C -0.019 4.019 17 N -0.338 5.338 18 C 0.358 3.642 19 O -0.461 6.461 20 C -0.107 4.107 21 C -0.113 4.113 22 C -0.122 4.122 23 C -0.075 4.075 24 C -0.056 4.056 25 N -0.236 5.236 26 C -0.130 4.130 27 C -0.231 4.231 28 N -0.017 5.017 29 C 0.014 3.986 30 C -0.143 4.143 31 H 0.090 0.910 32 H 0.058 0.942 33 H 0.203 0.797 34 H 0.085 0.915 35 H 0.066 0.934 36 H 0.117 0.883 37 H 0.093 0.907 38 H 0.140 0.860 39 H 0.130 0.870 40 H 0.230 0.770 41 H 0.221 0.779 42 H 0.199 0.801 43 H 0.224 0.776 44 H 0.197 0.803 45 H 0.070 0.930 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.740 -26.436 -2.733 26.634 hybrid contribution 0.093 2.685 0.906 2.835 sum 1.833 -23.752 -1.827 23.892 Atomic orbital electron populations 1.69798 1.06578 1.25902 1.59915 1.25499 0.96266 1.00953 1.04230 0.85303 0.77224 0.79664 0.78151 1.20171 1.22617 1.20763 1.19587 0.91391 0.85307 1.40378 0.90581 1.42718 1.05273 1.01011 1.88499 1.20256 0.93784 0.83699 0.94597 0.93259 1.23436 1.00805 0.96470 0.97163 1.21683 1.02450 0.94324 0.93507 1.22217 1.00540 0.92448 0.97302 0.88609 1.22174 1.01280 0.98511 0.79944 1.49557 1.57381 1.14440 1.12427 1.17512 0.78403 0.84478 0.83848 1.90800 1.59997 1.71975 1.23298 1.20090 1.08536 0.92968 0.89131 1.23365 0.95619 0.98199 0.94074 1.21633 0.96591 0.92024 1.01928 1.21032 0.97997 1.02504 0.85936 1.21776 1.03278 0.83147 0.97449 1.70630 1.24575 1.30925 0.97494 1.23009 1.00279 0.89252 1.00470 1.23133 1.13448 1.04480 0.82024 1.42678 1.38397 1.13663 1.06982 1.21401 0.99430 0.80334 0.97465 1.22295 1.00876 0.97233 0.93882 0.91015 0.94243 0.79698 0.91531 0.93437 0.88277 0.90748 0.85987 0.87010 0.77013 0.77903 0.80067 0.77599 0.80339 0.92989 0.90163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.89 13.06 21.65 0.28 -58.61 16 2 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 3 Si 0.97 45.59 29.55 68.60 2.03 47.61 16 4 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 5 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 6 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 7 C -0.23 -12.52 9.96 84.03 0.84 -11.68 16 8 H 0.08 3.88 7.83 -2.91 -0.02 3.85 16 9 N -0.74 -34.81 5.07 -323.90 -1.64 -36.45 16 10 C 0.19 6.32 3.35 44.79 0.15 6.47 16 11 H 0.05 1.74 8.09 -2.39 -0.02 1.72 16 12 C -0.14 -3.79 6.69 32.45 0.22 -3.57 16 13 C -0.08 -1.33 6.72 31.13 0.21 -1.12 16 14 C -0.11 -1.71 2.75 -10.57 -0.03 -1.74 16 15 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 16 C 0.10 1.24 4.68 84.99 0.40 1.64 16 17 N -0.61 -14.01 3.43 -828.10 -2.84 -16.84 16 18 C 0.57 16.09 7.81 86.56 0.68 16.77 16 19 O -0.58 -21.47 15.01 -4.20 -0.06 -21.53 16 20 C 0.00 -0.04 6.78 40.37 0.27 0.23 16 21 C -0.09 -1.13 8.66 22.53 0.20 -0.93 16 22 C -0.10 -0.77 10.04 22.21 0.22 -0.55 16 23 C -0.05 -0.75 10.09 22.45 0.23 -0.53 16 24 C 0.19 4.45 7.80 134.09 1.05 5.50 16 25 N -0.52 -13.96 11.31 -194.28 -2.20 -16.16 16 26 C 0.02 0.55 11.83 83.84 0.99 1.54 16 27 C -0.10 -2.74 10.80 83.36 0.90 -1.84 16 28 N -0.35 -9.23 2.97 -339.77 -1.01 -10.24 16 29 C 0.13 3.84 6.80 85.08 0.58 4.42 16 30 C -0.12 -3.34 2.46 -10.61 -0.03 -3.37 16 31 H 0.07 2.17 7.94 -2.39 -0.02 2.16 16 32 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 33 H 0.37 19.27 7.69 -92.71 -0.71 18.56 16 34 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.05 1.59 7.98 -2.39 -0.02 1.57 16 36 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.07 1.18 8.14 -2.39 -0.02 1.17 16 38 H 0.12 0.72 7.06 -2.39 -0.02 0.71 16 39 H 0.11 0.87 6.61 -2.39 -0.02 0.85 16 40 H 0.21 1.22 2.75 -6.29 -0.02 1.20 16 41 H 0.20 -0.45 8.06 -2.91 -0.02 -0.47 16 42 H 0.18 1.42 8.06 -2.91 -0.02 1.40 16 43 H 0.21 3.68 8.06 -2.91 -0.02 3.65 16 44 H 0.18 5.31 6.68 -2.91 -0.02 5.29 16 45 H 0.05 1.83 8.13 -2.39 -0.02 1.81 16 46 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -80.85 368.36 2.20 -78.66 By element: Atomic # 1 Polarization: 25.91 SS G_CDS: 0.30 Total: 26.21 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: 7.33 Total: 7.35 kcal Atomic # 7 Polarization: -130.90 SS G_CDS: -7.40 Total: -138.30 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -0.06 Total: -21.53 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Total: -80.85 2.20 -78.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026311968.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.992 kcal (2) G-P(sol) polarization free energy of solvation -80.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.08 seconds