Wall clock time and date at job start Tue Mar 31 2020 23:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46501 * 110.73210 * 2 1 4 4 C 1.34777 * 119.99677 * 56.59106 * 3 2 1 5 5 O 1.21586 * 120.00074 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99732 * 180.02562 * 4 3 2 7 7 C 1.40198 * 119.99611 * 180.02562 * 6 4 3 8 8 C 1.40395 * 125.97441 * 359.97438 * 7 6 4 9 9 C 1.35243 * 107.86535 * 179.76148 * 8 7 6 10 10 N 1.34960 * 107.86064 * 0.42509 * 9 8 7 11 11 C 1.46500 * 125.97985 * 179.83521 * 10 9 8 12 12 C 1.50706 * 109.47299 * 124.71356 * 11 10 9 13 13 H 1.07998 * 119.99503 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00434 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99826 * 359.72891 * 14 12 11 16 16 Si 1.86800 * 120.00406 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47364 * 179.72558 * 16 14 12 18 18 H 1.48508 * 109.46883 * 299.72681 * 16 14 12 19 19 H 1.48497 * 109.46870 * 59.72491 * 16 14 12 20 20 N 1.31213 * 125.96940 * 180.02562 * 7 6 4 21 21 C 1.54346 * 110.99220 * 123.52583 * 2 1 3 22 22 C 1.51375 * 105.16991 * 91.95766 * 21 2 1 23 23 C 1.38492 * 130.38712 * 197.19339 * 22 21 2 24 24 C 1.38104 * 120.21622 * 179.97438 * 23 22 21 25 25 C 1.38261 * 119.93150 * 0.02562 * 24 23 22 26 26 C 1.38094 * 119.93423 * 359.97438 * 25 24 23 27 27 C 1.38217 * 109.75818 * 17.18769 * 22 21 2 28 28 C 1.51365 * 109.75870 * 0.02562 * 27 22 21 29 29 H 1.09000 * 109.46854 * 60.70485 * 1 2 3 30 30 H 1.09009 * 109.47067 * 180.69666 * 1 2 3 31 31 H 1.09000 * 109.47235 * 300.70016 * 1 2 3 32 32 H 0.96998 * 119.99765 * 236.59826 * 3 2 1 33 33 H 0.96996 * 119.99913 * 359.97438 * 6 4 3 34 34 H 1.07994 * 126.06763 * 0.02745 * 8 7 6 35 35 H 1.08007 * 126.06985 * 180.26350 * 9 8 7 36 36 H 1.09004 * 109.47078 * 4.72118 * 11 10 9 37 37 H 1.08993 * 109.47364 * 244.71890 * 11 10 9 38 38 H 0.97000 * 120.00236 * 0.27947 * 15 14 12 39 39 H 1.09003 * 110.30612 * 210.87626 * 21 2 1 40 40 H 1.08999 * 110.30153 * 333.03223 * 21 2 1 41 41 H 1.08007 * 119.89532 * 359.97438 * 23 22 21 42 42 H 1.07998 * 120.03438 * 179.97438 * 24 23 22 43 43 H 1.08002 * 120.02710 * 180.02562 * 25 24 23 44 44 H 1.08005 * 119.89397 * 179.97438 * 26 25 24 45 45 H 1.09004 * 110.29975 * 223.88402 * 28 27 22 46 46 H 1.08993 * 110.30208 * 101.73743 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0486 1.3701 0.0000 4 6 1.6860 2.2279 0.9744 5 8 0.9290 1.8643 1.8536 6 7 2.1627 3.4885 0.9741 7 6 1.7860 4.3805 1.9880 8 6 0.9237 4.0956 3.0587 9 6 0.8196 5.2114 3.8157 10 7 1.5772 6.1713 3.2447 11 6 1.7473 7.5404 3.7375 12 6 3.2147 7.8286 3.9239 13 1 3.9473 7.0681 3.6974 14 6 3.6220 9.0630 4.3835 15 7 2.7301 9.9909 4.6542 16 14 5.4410 9.4204 4.6138 17 1 5.6137 10.8102 5.1077 18 1 6.0111 8.4695 5.6017 19 1 6.1441 9.2657 3.3150 20 7 2.1770 5.6279 2.1015 21 6 2.0829 -0.7959 1.2013 22 6 2.2714 -2.2075 0.6882 23 6 2.4322 -3.3985 1.3765 24 6 2.5896 -4.5843 0.6864 25 6 2.5873 -4.5834 -0.6962 26 6 2.4271 -3.3968 -1.3843 27 6 2.2689 -2.2065 -0.6939 28 6 2.0793 -0.7942 -1.2043 29 1 -0.3633 0.5029 -0.8962 30 1 -0.3634 -1.0277 0.0125 31 1 -0.3634 0.5247 0.8836 32 1 2.6528 1.6600 -0.7013 33 1 2.7670 3.7783 0.2729 34 1 0.4343 3.1515 3.2470 35 1 0.2320 5.3166 4.7159 36 1 1.2316 7.6498 4.6916 37 1 1.3282 8.2411 3.0156 38 1 1.7856 9.8054 4.5344 39 1 3.0376 -0.3800 1.5234 40 1 1.3677 -0.7847 2.0238 41 1 2.4345 -3.4000 2.4566 42 1 2.7152 -5.5113 1.2261 43 1 2.7099 -5.5099 -1.2375 44 1 2.4258 -3.3968 -2.4643 45 1 1.3612 -0.7817 -2.0243 46 1 3.0329 -0.3783 -1.5293 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121404607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:33 Heat of formation + Delta-G solvation = 61.335894 kcal Electronic energy + Delta-G solvation = -28173.600136 eV Core-core repulsion = 24257.066178 eV Total energy + Delta-G solvation = -3916.533958 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.35894 -41.68375 -40.48115 -37.78092 -36.29633 -35.51555 -34.23613 -32.54064 -32.34529 -31.03725 -30.57331 -28.37559 -28.13428 -27.35333 -25.22257 -23.78195 -22.68910 -22.25669 -21.96136 -21.22227 -20.75970 -19.26301 -19.14432 -18.23360 -17.37604 -17.05974 -16.67401 -16.38174 -16.13635 -16.05573 -15.79772 -15.60297 -15.46657 -14.98646 -14.66904 -14.37902 -14.24360 -14.00789 -13.90675 -13.71408 -13.69122 -13.57991 -13.22219 -13.01110 -12.96163 -12.61243 -12.26472 -12.14495 -12.07439 -11.95491 -11.87018 -11.66944 -11.60987 -11.00592 -10.91409 -10.69048 -10.27542 -9.79361 -9.70398 -9.42935 -9.13422 -8.76149 -6.55200 0.43993 0.48822 1.00191 1.07660 1.51000 1.57527 1.66892 1.78975 2.01785 2.38351 2.48846 2.84901 3.01301 3.05488 3.28832 3.64558 3.87536 3.90395 3.99649 4.10879 4.16000 4.17467 4.28246 4.57655 4.59364 4.62598 4.67630 4.71114 4.74118 4.79364 4.80497 4.87151 4.88186 4.91506 4.96587 5.11367 5.20287 5.22707 5.39063 5.49634 5.55647 5.61228 5.63886 5.70854 5.81979 5.87214 5.97909 6.12513 6.28264 6.42744 6.71742 7.10752 7.20662 7.44645 8.58799 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023423 B = 0.001934 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.137672 B =14477.597440 C =14850.311966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.198 3.802 3 N -0.714 5.714 4 C 0.714 3.286 5 O -0.588 6.588 6 N -0.637 5.637 7 C 0.289 3.711 8 C -0.288 4.288 9 C 0.053 3.947 10 N -0.345 5.345 11 C 0.260 3.740 12 C -0.620 4.620 13 H 0.045 0.955 14 C -0.020 4.020 15 N -0.923 5.923 16 Si 1.120 2.880 17 H -0.275 1.275 18 H -0.272 1.272 19 H -0.275 1.275 20 N -0.349 5.349 21 C -0.084 4.084 22 C -0.108 4.108 23 C -0.124 4.124 24 C -0.125 4.125 25 C -0.125 4.125 26 C -0.110 4.110 27 C -0.103 4.103 28 C -0.073 4.073 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.415 0.585 33 H 0.420 0.580 34 H 0.170 0.830 35 H 0.199 0.801 36 H 0.053 0.947 37 H 0.016 0.984 38 H 0.261 0.739 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.121 0.879 42 H 0.141 0.859 43 H 0.147 0.853 44 H 0.143 0.857 45 H 0.104 0.896 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.446 -29.318 -14.194 32.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.112 3.888 3 N -0.370 5.370 4 C 0.414 3.586 5 O -0.465 6.465 6 N -0.289 5.289 7 C 0.033 3.967 8 C -0.319 4.319 9 C -0.095 4.095 10 N -0.127 5.127 11 C 0.140 3.860 12 C -0.658 4.658 13 H 0.063 0.937 14 C -0.220 4.220 15 N -0.559 5.559 16 Si 0.941 3.059 17 H -0.200 1.200 18 H -0.197 1.197 19 H -0.200 1.200 20 N -0.180 5.180 21 C -0.122 4.122 22 C -0.109 4.109 23 C -0.142 4.142 24 C -0.143 4.143 25 C -0.143 4.143 26 C -0.128 4.128 27 C -0.103 4.103 28 C -0.110 4.110 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.253 0.747 33 H 0.257 0.743 34 H 0.188 0.812 35 H 0.216 0.784 36 H 0.071 0.929 37 H 0.034 0.966 38 H 0.070 0.930 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.139 0.861 42 H 0.159 0.841 43 H 0.165 0.835 44 H 0.160 0.840 45 H 0.122 0.878 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.372 -27.458 -13.427 30.567 hybrid contribution -1.199 -1.130 -0.342 1.683 sum -1.572 -28.588 -13.769 31.770 Atomic orbital electron populations 1.22099 0.93201 1.02655 1.03162 1.20717 0.94108 0.78774 0.95241 1.44962 1.52345 1.11151 1.28574 1.15750 0.80463 0.79523 0.82857 1.90808 1.39883 1.76840 1.38964 1.41435 1.50717 1.09354 1.27433 1.19073 0.96918 0.89241 0.91436 1.21708 1.10340 1.01359 0.98475 1.23162 0.97276 0.88482 1.00571 1.48525 1.34424 1.11504 1.18233 1.19406 0.98289 0.74475 0.93814 1.22283 0.91827 1.02263 1.49463 0.93677 1.27283 1.10658 0.91662 0.92358 1.70946 1.02764 1.35755 1.46458 0.82878 0.68913 0.76605 0.77525 1.20000 1.19691 1.20024 1.77258 1.24465 1.08643 1.07604 1.21359 1.01098 0.91238 0.98482 1.20595 1.00637 0.94501 0.95140 1.20870 1.01021 0.91950 1.00396 1.21340 0.99936 0.97984 0.95044 1.21392 0.99778 0.98757 0.94352 1.20906 0.99931 0.90967 1.00971 1.20549 1.00626 0.95334 0.93793 1.21251 1.03210 0.89969 0.96552 0.91361 0.91082 0.92121 0.74714 0.74272 0.81241 0.78381 0.92916 0.96591 0.92989 0.91029 0.91474 0.86099 0.84106 0.83539 0.83969 0.87750 0.87708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 8.35 71.98 0.60 -2.28 16 2 C 0.20 3.35 0.90 4.52 0.00 3.36 16 3 N -0.71 -12.55 5.13 -433.81 -2.23 -14.78 16 4 C 0.71 19.32 8.05 179.05 1.44 20.76 16 5 O -0.59 -19.54 10.88 -3.99 -0.04 -19.58 16 6 N -0.64 -18.85 5.46 -321.23 -1.75 -20.60 16 7 C 0.29 11.53 8.11 133.31 1.08 12.61 16 8 C -0.29 -11.30 9.61 22.10 0.21 -11.09 16 9 C 0.05 2.12 11.44 83.52 0.96 3.07 16 10 N -0.34 -16.39 3.67 -351.84 -1.29 -17.68 16 11 C 0.26 13.49 5.57 85.64 0.48 13.97 16 12 C -0.62 -35.55 9.24 25.60 0.24 -35.32 16 13 H 0.04 2.70 7.81 -2.91 -0.02 2.68 16 14 C -0.02 -1.13 5.46 84.65 0.46 -0.66 16 15 N -0.92 -54.25 13.65 21.45 0.29 -53.95 16 16 Si 1.12 49.93 29.90 68.60 2.05 51.98 16 17 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 18 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 19 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 20 N -0.35 -16.35 12.42 -54.44 -0.68 -17.03 16 21 C -0.08 -1.71 5.23 30.52 0.16 -1.55 16 22 C -0.11 -1.98 6.14 -19.59 -0.12 -2.10 16 23 C -0.12 -2.12 10.04 22.30 0.22 -1.90 16 24 C -0.13 -1.68 10.05 22.24 0.22 -1.46 16 25 C -0.13 -1.44 10.05 22.24 0.22 -1.22 16 26 C -0.11 -1.32 10.04 22.30 0.22 -1.10 16 27 C -0.10 -1.51 6.14 -19.59 -0.12 -1.63 16 28 C -0.07 -0.82 5.96 30.52 0.18 -0.64 16 29 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.07 1.22 8.14 -2.38 -0.02 1.21 16 31 H 0.06 1.54 6.02 -2.39 -0.01 1.52 16 32 H 0.42 4.50 8.35 -92.71 -0.77 3.72 16 33 H 0.42 9.83 8.84 -92.71 -0.82 9.01 16 34 H 0.17 6.44 5.91 -2.91 -0.02 6.42 16 35 H 0.20 6.28 8.06 -2.91 -0.02 6.26 16 36 H 0.05 2.63 7.94 -2.39 -0.02 2.61 16 37 H 0.02 0.88 8.00 -2.39 -0.02 0.86 16 38 H 0.26 15.15 7.22 -92.71 -0.67 14.49 16 39 H 0.07 1.60 8.08 -2.39 -0.02 1.58 16 40 H 0.07 1.64 7.87 -2.39 -0.02 1.62 16 41 H 0.12 1.90 8.06 -2.91 -0.02 1.88 16 42 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 43 H 0.15 0.94 8.06 -2.91 -0.02 0.91 16 44 H 0.14 1.02 8.06 -2.91 -0.02 1.00 16 45 H 0.10 0.84 7.91 -2.38 -0.02 0.82 16 46 H 0.10 0.84 7.83 -2.39 -0.02 0.83 16 Total: -1.00 -74.33 381.14 2.35 -71.97 By element: Atomic # 1 Polarization: 27.31 SS G_CDS: -0.47 Total: 26.85 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: 6.47 Total: -7.17 kcal Atomic # 7 Polarization: -118.39 SS G_CDS: -5.65 Total: -124.04 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -0.04 Total: -19.58 kcal Atomic # 14 Polarization: 49.93 SS G_CDS: 2.05 Total: 51.98 kcal Total: -74.33 2.35 -71.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121404607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.309 kcal (2) G-P(sol) polarization free energy of solvation -74.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds