Wall clock time and date at job start Tue Mar 31 2020 23:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99741 * 2 1 4 4 H 1.48501 * 109.47240 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47197 * 300.00193 * 3 2 1 6 6 H 1.48494 * 109.46864 * 59.99994 * 3 2 1 7 7 C 1.38811 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99845 * 196.44649 * 7 2 1 9 9 N 1.36933 * 120.00271 * 16.44076 * 7 2 1 10 10 C 1.46964 * 120.59654 * 205.05998 * 9 7 2 11 11 C 1.53368 * 108.63674 * 235.25199 * 10 9 7 12 12 N 1.46966 * 108.63590 * 310.57362 * 11 10 9 13 13 C 1.34775 * 120.59798 * 235.20453 * 12 11 10 14 14 O 1.21550 * 119.99735 * 5.77397 * 13 12 11 15 15 C 1.47846 * 120.00027 * 185.76826 * 13 12 11 16 16 C 1.39570 * 120.14429 * 216.10172 * 15 13 12 17 17 C 1.37967 * 119.85443 * 179.97438 * 16 15 13 18 18 C 1.38354 * 120.14016 * 0.02562 * 17 16 15 19 19 C 1.50701 * 119.85121 * 179.97438 * 18 17 16 20 20 N 1.46501 * 109.47195 * 90.00053 * 19 18 17 21 21 C 1.34949 * 126.03894 * 124.71521 * 20 19 18 22 22 C 1.35322 * 107.74331 * 179.83987 * 21 20 19 23 23 C 1.39859 * 107.92108 * 0.42305 * 22 21 20 24 24 N 1.30837 * 108.20536 * 359.73861 * 23 22 21 25 25 C 1.38359 * 120.29420 * 0.23279 * 18 17 16 26 26 C 1.37957 * 120.14709 * 359.49082 * 25 18 17 27 27 C 1.46965 * 118.80898 * 55.47856 * 12 11 10 28 28 C 1.46971 * 120.59224 * 25.08905 * 9 7 2 29 29 H 0.96996 * 120.00572 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.61029 * 115.50495 * 10 9 7 31 31 H 1.09002 * 109.75076 * 355.07859 * 10 9 7 32 32 H 1.09004 * 109.61394 * 190.83179 * 11 10 9 33 33 H 1.08993 * 109.75405 * 70.40229 * 11 10 9 34 34 H 1.08000 * 120.07716 * 0.02562 * 16 15 13 35 35 H 1.07996 * 119.92347 * 180.02562 * 17 16 15 36 36 H 1.09000 * 109.47566 * 209.99775 * 19 18 17 37 37 H 1.08997 * 109.47291 * 330.00132 * 19 18 17 38 38 H 1.07998 * 126.12171 * 0.02562 * 21 20 19 39 39 H 1.08000 * 126.03449 * 180.16184 * 22 21 20 40 40 H 1.08000 * 125.89917 * 179.71629 * 23 22 21 41 41 H 1.08001 * 119.92541 * 179.74401 * 25 18 17 42 42 H 1.08000 * 120.07310 * 180.25186 * 26 25 18 43 43 H 1.09002 * 109.61491 * 64.26704 * 27 12 11 44 44 H 1.09008 * 109.61308 * 184.77848 * 27 12 11 45 45 H 1.09010 * 109.60617 * 244.49189 * 28 9 7 46 46 H 1.08999 * 109.61136 * 5.00236 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0572 -1.2213 0.2643 9 7 1.3677 -2.3637 -0.3367 10 6 1.8575 -3.6589 0.1555 11 6 2.1002 -4.5800 -1.0466 12 7 0.9087 -4.5537 -1.9065 13 6 0.2767 -5.6970 -2.2381 14 8 0.6263 -6.7504 -1.7425 15 6 -0.8417 -5.6698 -3.2047 16 6 -1.9331 -6.5236 -3.0379 17 6 -2.9738 -6.4929 -3.9431 18 6 -2.9368 -5.6186 -5.0147 19 6 -4.0768 -5.5909 -6.0000 20 7 -5.0815 -4.6209 -5.5571 21 6 -5.5568 -3.5845 -6.2790 22 6 -6.4675 -2.9348 -5.5175 23 6 -6.5444 -3.5910 -4.2848 24 7 -5.7140 -4.6019 -4.3073 25 6 -1.8553 -4.7733 -5.1888 26 6 -0.8108 -4.7900 -4.2877 27 6 0.4222 -3.2590 -2.4032 28 6 0.1762 -2.3374 -1.1967 29 1 -0.4851 0.8400 0.0004 30 1 1.1125 -4.1055 0.8140 31 1 2.7901 -3.5167 0.7016 32 1 2.2774 -5.5975 -0.6980 33 1 2.9655 -4.2304 -1.6097 34 1 -1.9634 -7.2063 -2.2015 35 1 -3.8190 -7.1528 -3.8149 36 1 -3.7016 -5.3026 -6.9819 37 1 -4.5292 -6.5807 -6.0601 38 1 -5.2651 -3.3226 -7.2853 39 1 -7.0317 -2.0612 -5.8086 40 1 -7.1792 -3.3114 -3.4570 41 1 -1.8307 -4.0961 -6.0298 42 1 0.0309 -4.1268 -4.4225 43 1 1.1702 -2.8145 -3.0599 44 1 -0.5092 -3.4037 -2.9508 45 1 -0.6886 -2.6899 -0.6344 46 1 -0.0010 -1.3199 -1.5453 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152766887.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:09 Heat of formation + Delta-G solvation = 119.369782 kcal Electronic energy + Delta-G solvation = -29125.464003 eV Core-core repulsion = 25211.446583 eV Total energy + Delta-G solvation = -3914.017420 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.26982 -40.29318 -38.56549 -36.78996 -34.41513 -33.86842 -31.83414 -31.04027 -30.81563 -30.15566 -29.81736 -27.38878 -26.38092 -23.98896 -23.36066 -22.55470 -22.33266 -21.15884 -20.89089 -20.37668 -19.04789 -17.53620 -17.42614 -16.41874 -16.22251 -15.83350 -15.41467 -14.90644 -14.77622 -14.50998 -14.42111 -14.22074 -13.91302 -13.69246 -13.59860 -13.35922 -13.27796 -13.11584 -12.94420 -12.71882 -12.47465 -12.27682 -11.85785 -11.57608 -11.35916 -11.11000 -10.88748 -10.75275 -10.73061 -10.50483 -10.23582 -10.03965 -9.88428 -9.58323 -9.51352 -9.03546 -8.88630 -8.70193 -8.62005 -8.27903 -6.76886 -5.85948 -3.29839 0.75010 1.29527 1.78388 2.38713 2.76739 3.01165 3.31904 3.35098 3.40433 3.42559 3.80554 4.15830 4.40296 4.42735 4.65233 4.72254 4.75987 4.81504 4.97281 5.00886 5.23960 5.28646 5.34471 5.39611 5.47363 5.63695 5.66894 5.76765 5.83202 5.88231 5.88635 5.90256 6.07429 6.09868 6.20014 6.30231 6.32018 6.36676 6.41008 6.53134 6.73801 6.77119 6.84444 6.90900 7.20893 7.51060 7.59820 7.68239 7.85013 8.32666 8.46859 9.10062 9.72891 10.27949 11.20808 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010495 B = 0.003250 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2667.415369 B = 8613.289773 C =10598.932354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.001 4.001 3 Si 0.905 3.095 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.251 4.251 8 H 0.070 0.930 9 N -0.593 5.593 10 C 0.131 3.869 11 C 0.096 3.904 12 N -0.588 5.588 13 C 0.550 3.450 14 O -0.553 6.553 15 C -0.107 4.107 16 C -0.069 4.069 17 C -0.091 4.091 18 C -0.098 4.098 19 C 0.176 3.824 20 N -0.370 5.370 21 C 0.050 3.950 22 C -0.274 4.274 23 C 0.043 3.957 24 N -0.285 5.285 25 C -0.108 4.108 26 C -0.091 4.091 27 C 0.066 3.934 28 C 0.154 3.846 29 H 0.255 0.745 30 H 0.024 0.976 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.133 0.867 35 H 0.129 0.871 36 H 0.105 0.895 37 H 0.093 0.907 38 H 0.172 0.828 39 H 0.146 0.854 40 H 0.182 0.818 41 H 0.126 0.874 42 H 0.138 0.862 43 H 0.065 0.935 44 H 0.084 0.916 45 H 0.022 0.978 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.535 -9.093 -15.802 20.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.199 4.199 3 Si 0.735 3.265 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.380 4.380 8 H 0.088 0.912 9 N -0.315 5.315 10 C 0.004 3.996 11 C -0.028 4.028 12 N -0.319 5.319 13 C 0.338 3.662 14 O -0.434 6.434 15 C -0.110 4.110 16 C -0.088 4.088 17 C -0.109 4.109 18 C -0.099 4.099 19 C 0.055 3.945 20 N -0.152 5.152 21 C -0.096 4.096 22 C -0.304 4.304 23 C -0.144 4.144 24 N -0.107 5.107 25 C -0.127 4.127 26 C -0.109 4.109 27 C -0.058 4.058 28 C 0.027 3.973 29 H 0.065 0.935 30 H 0.042 0.958 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.083 0.917 34 H 0.151 0.849 35 H 0.147 0.853 36 H 0.123 0.877 37 H 0.111 0.889 38 H 0.189 0.811 39 H 0.163 0.837 40 H 0.199 0.801 41 H 0.144 0.856 42 H 0.155 0.845 43 H 0.083 0.917 44 H 0.102 0.898 45 H 0.040 0.960 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -8.840 -10.552 -14.915 20.297 hybrid contribution 0.026 1.833 -0.429 1.883 sum -8.813 -8.719 -15.344 19.727 Atomic orbital electron populations 1.69983 1.05246 1.25537 1.54207 1.25014 0.95351 0.98446 1.01061 0.86172 0.79271 0.83700 0.77346 1.20244 1.21503 1.21664 1.19307 0.92659 0.84534 1.41530 0.91211 1.44056 1.31521 1.01170 1.54785 1.21282 0.98405 0.87118 0.92767 1.22239 0.86043 1.01286 0.93264 1.47992 1.28807 1.06400 1.48692 1.18349 0.82381 0.83864 0.81571 1.90721 1.66906 1.30558 1.55171 1.20050 0.96095 0.98207 0.96659 1.21188 0.91950 0.96903 0.98753 1.20924 0.97989 0.98540 0.93477 1.19867 0.95031 0.97830 0.97141 1.20583 0.85179 0.92443 0.96265 1.48772 1.32277 1.23059 1.11128 1.22562 0.97709 0.90472 0.98814 1.21517 1.07056 1.06096 0.95686 1.23927 0.98113 0.93821 0.98496 1.77420 1.11344 1.22455 0.99434 1.20921 0.93665 0.98553 0.99523 1.21516 0.99205 0.96728 0.93474 1.23259 0.98939 0.83577 1.00003 1.21415 0.88298 0.99482 0.88108 0.93491 0.95787 0.91444 0.89882 0.91735 0.84934 0.85348 0.87698 0.88853 0.81111 0.83660 0.80147 0.85591 0.84454 0.91694 0.89786 0.95994 0.87162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.56 10.89 55.49 0.60 -24.95 16 2 C 0.00 -0.02 4.97 -17.43 -0.09 -0.11 16 3 Si 0.91 21.09 29.58 -169.99 -5.03 16.06 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.25 -6.69 9.62 -15.06 -0.14 -6.83 16 8 H 0.07 1.82 7.87 -52.49 -0.41 1.41 16 9 N -0.59 -14.61 2.98 -171.76 -0.51 -15.12 16 10 C 0.13 2.79 6.67 -3.60 -0.02 2.77 16 11 C 0.10 1.79 6.60 -3.60 -0.02 1.77 16 12 N -0.59 -11.05 2.94 -173.33 -0.51 -11.56 16 13 C 0.55 10.23 7.37 -12.33 -0.09 10.14 16 14 O -0.55 -11.62 16.26 5.32 0.09 -11.53 16 15 C -0.11 -1.66 5.29 -104.97 -0.55 -2.22 16 16 C -0.07 -0.98 9.62 -39.18 -0.38 -1.35 16 17 C -0.09 -1.07 9.68 -39.64 -0.38 -1.45 16 18 C -0.10 -1.03 5.32 -104.53 -0.56 -1.59 16 19 C 0.18 1.38 6.63 -5.19 -0.03 1.35 16 20 N -0.37 -3.83 3.67 -62.54 -0.23 -4.06 16 21 C 0.05 0.44 11.45 -17.22 -0.20 0.24 16 22 C -0.27 -2.61 10.80 -40.01 -0.43 -3.04 16 23 C 0.04 0.48 12.02 -17.37 -0.21 0.27 16 24 N -0.29 -3.69 12.41 30.62 0.38 -3.31 16 25 C -0.11 -1.18 9.68 -39.64 -0.38 -1.57 16 26 C -0.09 -1.20 7.34 -39.19 -0.29 -1.49 16 27 C 0.07 1.22 5.01 -3.37 -0.02 1.20 16 28 C 0.15 3.59 5.56 -3.36 -0.02 3.57 16 29 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 1.35 7.93 -51.93 -0.41 0.94 16 32 H 0.08 1.52 6.99 -51.93 -0.36 1.15 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.13 1.86 8.02 -52.49 -0.42 1.44 16 35 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 36 H 0.10 0.50 8.01 -51.93 -0.42 0.08 16 37 H 0.09 0.62 8.08 -51.93 -0.42 0.20 16 38 H 0.17 0.85 8.06 -52.49 -0.42 0.42 16 39 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.18 1.55 8.06 -52.49 -0.42 1.13 16 41 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 42 H 0.14 1.74 6.13 -52.49 -0.32 1.41 16 43 H 0.06 1.16 8.11 -51.93 -0.42 0.74 16 44 H 0.08 1.41 4.37 -51.92 -0.23 1.18 16 45 H 0.02 0.56 8.14 -51.92 -0.42 0.14 16 46 H 0.11 2.83 5.69 -51.93 -0.30 2.54 16 LS Contribution 377.92 15.07 5.70 5.70 Total: -1.00 -33.83 377.92 -9.56 -43.39 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -6.23 Total: 3.72 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -3.82 Total: 1.65 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: -0.27 Total: -58.99 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.09 Total: -11.53 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.83 -9.56 -43.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152766887.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.764 kcal (2) G-P(sol) polarization free energy of solvation -33.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds