Wall clock time and date at job start Tue Mar 31 2020 23:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99741 * 2 1 4 4 H 1.48501 * 109.47240 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47197 * 300.00193 * 3 2 1 6 6 H 1.48494 * 109.46864 * 59.99994 * 3 2 1 7 7 C 1.38811 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99845 * 196.44649 * 7 2 1 9 9 N 1.36933 * 120.00271 * 16.44076 * 7 2 1 10 10 C 1.46964 * 120.59654 * 205.05998 * 9 7 2 11 11 C 1.53368 * 108.63674 * 235.25199 * 10 9 7 12 12 N 1.46966 * 108.63590 * 310.57362 * 11 10 9 13 13 C 1.34775 * 120.59798 * 235.20453 * 12 11 10 14 14 O 1.21550 * 119.99735 * 5.77397 * 13 12 11 15 15 C 1.47846 * 120.00027 * 185.76826 * 13 12 11 16 16 C 1.39570 * 120.14429 * 216.10172 * 15 13 12 17 17 C 1.37967 * 119.85443 * 179.97438 * 16 15 13 18 18 C 1.38354 * 120.14016 * 0.02562 * 17 16 15 19 19 C 1.50701 * 119.85121 * 179.97438 * 18 17 16 20 20 N 1.46501 * 109.47195 * 90.00053 * 19 18 17 21 21 C 1.34949 * 126.03894 * 124.71521 * 20 19 18 22 22 C 1.35322 * 107.74331 * 179.83987 * 21 20 19 23 23 C 1.39859 * 107.92108 * 0.42305 * 22 21 20 24 24 N 1.30837 * 108.20536 * 359.73861 * 23 22 21 25 25 C 1.38359 * 120.29420 * 0.23279 * 18 17 16 26 26 C 1.37957 * 120.14709 * 359.49082 * 25 18 17 27 27 C 1.46965 * 118.80898 * 55.47856 * 12 11 10 28 28 C 1.46971 * 120.59224 * 25.08905 * 9 7 2 29 29 H 0.96996 * 120.00572 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.61029 * 115.50495 * 10 9 7 31 31 H 1.09002 * 109.75076 * 355.07859 * 10 9 7 32 32 H 1.09004 * 109.61394 * 190.83179 * 11 10 9 33 33 H 1.08993 * 109.75405 * 70.40229 * 11 10 9 34 34 H 1.08000 * 120.07716 * 0.02562 * 16 15 13 35 35 H 1.07996 * 119.92347 * 180.02562 * 17 16 15 36 36 H 1.09000 * 109.47566 * 209.99775 * 19 18 17 37 37 H 1.08997 * 109.47291 * 330.00132 * 19 18 17 38 38 H 1.07998 * 126.12171 * 0.02562 * 21 20 19 39 39 H 1.08000 * 126.03449 * 180.16184 * 22 21 20 40 40 H 1.08000 * 125.89917 * 179.71629 * 23 22 21 41 41 H 1.08001 * 119.92541 * 179.74401 * 25 18 17 42 42 H 1.08000 * 120.07310 * 180.25186 * 26 25 18 43 43 H 1.09002 * 109.61491 * 64.26704 * 27 12 11 44 44 H 1.09008 * 109.61308 * 184.77848 * 27 12 11 45 45 H 1.09010 * 109.60617 * 244.49189 * 28 9 7 46 46 H 1.08999 * 109.61136 * 5.00236 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0572 -1.2213 0.2643 9 7 1.3677 -2.3637 -0.3367 10 6 1.8575 -3.6589 0.1555 11 6 2.1002 -4.5800 -1.0466 12 7 0.9087 -4.5537 -1.9065 13 6 0.2767 -5.6970 -2.2381 14 8 0.6263 -6.7504 -1.7425 15 6 -0.8417 -5.6698 -3.2047 16 6 -1.9331 -6.5236 -3.0379 17 6 -2.9738 -6.4929 -3.9431 18 6 -2.9368 -5.6186 -5.0147 19 6 -4.0768 -5.5909 -6.0000 20 7 -5.0815 -4.6209 -5.5571 21 6 -5.5568 -3.5845 -6.2790 22 6 -6.4675 -2.9348 -5.5175 23 6 -6.5444 -3.5910 -4.2848 24 7 -5.7140 -4.6019 -4.3073 25 6 -1.8553 -4.7733 -5.1888 26 6 -0.8108 -4.7900 -4.2877 27 6 0.4222 -3.2590 -2.4032 28 6 0.1762 -2.3374 -1.1967 29 1 -0.4851 0.8400 0.0004 30 1 1.1125 -4.1055 0.8140 31 1 2.7901 -3.5167 0.7016 32 1 2.2774 -5.5975 -0.6980 33 1 2.9655 -4.2304 -1.6097 34 1 -1.9634 -7.2063 -2.2015 35 1 -3.8190 -7.1528 -3.8149 36 1 -3.7016 -5.3026 -6.9819 37 1 -4.5292 -6.5807 -6.0601 38 1 -5.2651 -3.3226 -7.2853 39 1 -7.0317 -2.0612 -5.8086 40 1 -7.1792 -3.3114 -3.4570 41 1 -1.8307 -4.0961 -6.0298 42 1 0.0309 -4.1268 -4.4225 43 1 1.1702 -2.8145 -3.0599 44 1 -0.5092 -3.4037 -2.9508 45 1 -0.6886 -2.6899 -0.6344 46 1 -0.0010 -1.3199 -1.5453 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152766887.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:08 Heat of formation + Delta-G solvation = 99.536053 kcal Electronic energy + Delta-G solvation = -29126.324058 eV Core-core repulsion = 25211.446583 eV Total energy + Delta-G solvation = -3914.877475 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.00325 -41.57308 -39.72784 -38.46991 -35.80361 -35.08908 -33.41838 -32.26602 -31.95789 -31.51234 -30.70109 -28.94172 -27.47662 -25.66784 -24.79115 -23.73650 -23.57214 -22.16234 -21.82802 -21.37856 -20.56538 -19.09597 -18.16016 -17.89285 -17.59526 -16.92014 -16.74171 -16.59269 -15.99217 -15.62962 -15.56114 -15.46896 -15.22469 -15.13876 -14.96582 -14.61131 -14.46615 -14.31694 -14.10879 -13.59003 -13.57018 -13.33779 -13.17179 -13.04508 -12.76064 -12.68766 -12.51025 -12.26755 -12.09589 -12.05332 -11.85098 -11.72093 -11.49114 -11.00555 -10.63863 -10.30721 -10.06814 -9.92308 -9.84311 -9.41699 -8.73303 -7.89110 -5.37478 -0.26862 0.33350 1.08942 1.47445 1.50166 1.51784 1.60645 1.82019 2.00490 2.04332 2.50015 2.76190 3.24803 3.33796 3.53013 3.54534 3.71908 3.89171 3.96522 4.15886 4.16454 4.17573 4.25614 4.30733 4.32389 4.45251 4.48573 4.54293 4.55184 4.70608 4.72738 4.75780 4.79954 4.96224 4.99501 4.99981 5.16603 5.19644 5.22951 5.28799 5.41376 5.48657 5.57436 5.62673 5.80497 5.82072 6.25007 6.31647 6.35161 6.86472 6.99810 7.07414 7.75157 8.27597 9.15678 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010495 B = 0.003250 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2667.415369 B = 8613.289773 C =10598.932354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.050 4.050 3 Si 0.972 3.028 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.296 1.296 7 C -0.262 4.262 8 H 0.074 0.926 9 N -0.609 5.609 10 C 0.131 3.869 11 C 0.104 3.896 12 N -0.594 5.594 13 C 0.549 3.451 14 O -0.585 6.585 15 C -0.135 4.135 16 C -0.085 4.085 17 C -0.092 4.092 18 C -0.087 4.087 19 C 0.171 3.829 20 N -0.375 5.375 21 C 0.059 3.941 22 C -0.292 4.292 23 C 0.026 3.974 24 N -0.335 5.335 25 C -0.101 4.101 26 C -0.096 4.096 27 C 0.086 3.914 28 C 0.160 3.840 29 H 0.252 0.748 30 H 0.005 0.995 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.121 0.879 35 H 0.141 0.859 36 H 0.148 0.852 37 H 0.106 0.894 38 H 0.214 0.786 39 H 0.162 0.838 40 H 0.190 0.810 41 H 0.162 0.838 42 H 0.144 0.856 43 H 0.080 0.920 44 H 0.105 0.895 45 H -0.013 1.013 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.495 -8.508 -19.158 23.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.245 4.245 3 Si 0.800 3.200 4 H -0.190 1.190 5 H -0.212 1.212 6 H -0.223 1.223 7 C -0.392 4.392 8 H 0.092 0.908 9 N -0.332 5.332 10 C 0.005 3.995 11 C -0.019 4.019 12 N -0.324 5.324 13 C 0.339 3.661 14 O -0.467 6.467 15 C -0.139 4.139 16 C -0.104 4.104 17 C -0.111 4.111 18 C -0.088 4.088 19 C 0.052 3.948 20 N -0.158 5.158 21 C -0.087 4.087 22 C -0.321 4.321 23 C -0.160 4.160 24 N -0.157 5.157 25 C -0.119 4.119 26 C -0.115 4.115 27 C -0.037 4.037 28 C 0.033 3.967 29 H 0.061 0.939 30 H 0.023 0.977 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.139 0.861 35 H 0.159 0.841 36 H 0.166 0.834 37 H 0.124 0.876 38 H 0.230 0.770 39 H 0.180 0.820 40 H 0.207 0.793 41 H 0.180 0.820 42 H 0.161 0.839 43 H 0.098 0.902 44 H 0.122 0.878 45 H 0.005 0.995 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.792 -9.991 -18.276 22.608 hybrid contribution -0.078 1.594 0.621 1.712 sum -8.870 -8.397 -17.656 21.469 Atomic orbital electron populations 1.70152 1.06721 1.25986 1.55511 1.25771 0.96049 1.01488 1.01169 0.85135 0.78542 0.79497 0.76802 1.19031 1.21227 1.22312 1.19645 0.93036 0.85435 1.41069 0.90786 1.44318 1.31620 1.01817 1.55449 1.21361 0.98127 0.86254 0.93797 1.22095 0.86711 1.00712 0.92412 1.48044 1.28912 1.06616 1.48848 1.18867 0.82570 0.83119 0.81511 1.90687 1.67884 1.31524 1.56598 1.19919 0.95815 1.00637 0.97486 1.21217 0.92732 0.97010 0.99415 1.21120 0.97446 0.99111 0.93384 1.20236 0.95693 0.96207 0.96695 1.20911 0.83766 0.93188 0.96962 1.48934 1.32440 1.23810 1.10609 1.23243 0.96407 0.89002 1.00011 1.21858 1.07988 1.06956 0.95292 1.24296 0.98086 0.93873 0.99727 1.77347 1.12935 1.23833 1.01555 1.21312 0.92478 0.98450 0.99646 1.21626 1.00275 0.96311 0.93261 1.23028 1.00507 0.82429 0.97767 1.21218 0.86958 0.99202 0.89279 0.93874 0.97740 0.90332 0.89481 0.90202 0.86137 0.84081 0.83429 0.87569 0.76961 0.82031 0.79318 0.82025 0.83882 0.90177 0.87754 0.99469 0.89425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.12 10.89 21.65 0.24 -53.88 16 2 C -0.05 -2.70 4.97 84.86 0.42 -2.28 16 3 Si 0.97 43.41 29.58 68.60 2.03 45.44 16 4 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.29 -12.55 7.11 99.48 0.71 -11.85 16 6 H -0.30 -13.42 7.11 99.48 0.71 -12.72 16 7 C -0.26 -14.04 9.62 84.03 0.81 -13.23 16 8 H 0.07 3.82 7.87 -2.91 -0.02 3.80 16 9 N -0.61 -30.50 2.98 -697.33 -2.08 -32.58 16 10 C 0.13 5.66 6.67 86.41 0.58 6.24 16 11 C 0.10 3.90 6.60 86.41 0.57 4.47 16 12 N -0.59 -22.34 2.94 -820.56 -2.41 -24.75 16 13 C 0.55 20.70 7.37 86.79 0.64 21.34 16 14 O -0.58 -25.18 16.26 -3.87 -0.06 -25.24 16 15 C -0.14 -4.20 5.29 -20.09 -0.11 -4.30 16 16 C -0.08 -2.43 9.62 22.53 0.22 -2.21 16 17 C -0.09 -2.07 9.68 22.23 0.22 -1.85 16 18 C -0.09 -1.59 5.32 -19.81 -0.11 -1.69 16 19 C 0.17 1.98 6.63 85.63 0.57 2.55 16 20 N -0.38 -6.58 3.67 -351.79 -1.29 -7.87 16 21 C 0.06 0.80 11.45 83.54 0.96 1.76 16 22 C -0.29 -4.91 10.80 21.99 0.24 -4.67 16 23 C 0.03 0.55 12.02 85.23 1.02 1.58 16 24 N -0.33 -8.28 12.41 -57.03 -0.71 -8.99 16 25 C -0.10 -1.85 9.68 22.23 0.22 -1.64 16 26 C -0.10 -2.36 7.34 22.53 0.17 -2.20 16 27 C 0.09 3.16 5.01 86.56 0.43 3.59 16 28 C 0.16 7.67 5.56 86.56 0.48 8.15 16 29 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 30 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.08 3.16 7.93 -2.39 -0.02 3.14 16 32 H 0.09 3.19 6.99 -2.38 -0.02 3.18 16 33 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 34 H 0.12 3.60 8.02 -2.91 -0.02 3.58 16 35 H 0.14 2.73 8.06 -2.91 -0.02 2.70 16 36 H 0.15 0.47 8.01 -2.39 -0.02 0.45 16 37 H 0.11 1.00 8.08 -2.39 -0.02 0.98 16 38 H 0.21 0.89 8.06 -2.91 -0.02 0.86 16 39 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 40 H 0.19 3.29 8.06 -2.91 -0.02 3.27 16 41 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 42 H 0.14 3.29 6.13 -2.91 -0.02 3.27 16 43 H 0.08 2.73 8.11 -2.39 -0.02 2.71 16 44 H 0.10 3.42 4.37 -2.38 -0.01 3.41 16 45 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16 46 H 0.09 4.63 5.69 -2.39 -0.01 4.61 16 Total: -1.00 -76.17 377.92 4.02 -72.15 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: 0.99 Total: 20.12 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: 7.32 Total: 15.61 kcal Atomic # 7 Polarization: -121.82 SS G_CDS: -6.26 Total: -128.08 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -0.06 Total: -25.24 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -76.17 4.02 -72.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152766887.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.682 kcal (2) G-P(sol) polarization free energy of solvation -76.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds