Wall clock time and date at job start Tue Mar 31 2020 22:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99706 * 2 1 4 4 H 1.48496 * 109.47236 * 269.99455 * 3 2 1 5 5 H 1.48503 * 109.47398 * 29.99696 * 3 2 1 6 6 H 1.48500 * 109.46995 * 149.99558 * 3 2 1 7 7 C 1.37878 * 119.99921 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99667 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00172 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47301 * 179.97438 * 9 7 2 11 11 C 1.46498 * 119.99869 * 88.24658 * 10 9 7 12 12 C 1.50700 * 109.46886 * 90.00342 * 11 10 9 13 13 C 1.38229 * 119.61422 * 95.00066 * 12 11 10 14 14 C 1.38632 * 119.15559 * 180.02562 * 13 12 11 15 15 C 1.38668 * 118.42524 * 0.02562 * 14 13 12 16 16 C 1.38188 * 119.15919 * 359.97438 * 15 14 13 17 17 N 1.31851 * 119.61770 * 275.01778 * 12 11 10 18 18 C 1.34775 * 119.99854 * 268.25007 * 10 9 7 19 19 O 1.21281 * 119.99813 * 185.34547 * 18 10 9 20 20 C 1.50701 * 120.00310 * 5.34779 * 18 10 9 21 21 H 1.09006 * 109.46243 * 33.94638 * 20 18 10 22 22 C 1.53109 * 109.46394 * 153.91515 * 20 18 10 23 23 C 1.53357 * 109.51244 * 190.27915 * 22 20 18 24 24 C 1.50821 * 108.38657 * 310.08182 * 23 22 20 25 25 N 1.34332 * 128.03161 * 196.64672 * 24 23 22 26 26 H 0.97000 * 126.08979 * 359.79907 * 25 24 23 27 27 N 1.40296 * 107.81415 * 179.78397 * 25 24 23 28 28 C 1.31067 * 108.27297 * 0.06347 * 27 25 24 29 29 C 1.35745 * 124.12364 * 16.51427 * 24 23 22 30 30 C 1.50840 * 124.11272 * 0.22753 * 29 24 23 31 31 H 0.96995 * 120.00232 * 0.02562 * 1 2 3 32 32 H 1.08999 * 109.47082 * 60.00303 * 9 7 2 33 33 H 1.09002 * 109.47498 * 300.00271 * 9 7 2 34 34 H 1.08994 * 109.47377 * 330.00364 * 11 10 9 35 35 H 1.08998 * 109.47113 * 210.00431 * 11 10 9 36 36 H 1.07993 * 120.42502 * 0.04403 * 13 12 11 37 37 H 1.07997 * 120.78803 * 180.02562 * 14 13 12 38 38 H 1.07999 * 120.42172 * 180.02562 * 15 14 13 39 39 H 1.08006 * 119.61309 * 179.72637 * 16 15 14 40 40 H 1.08996 * 109.46478 * 310.30180 * 22 20 18 41 41 H 1.09001 * 109.45920 * 70.28112 * 22 20 18 42 42 H 1.08996 * 109.69986 * 190.33885 * 23 22 20 43 43 H 1.09010 * 109.69324 * 69.81072 * 23 22 20 44 44 H 1.08000 * 125.96316 * 179.97438 * 28 27 25 45 45 H 1.08997 * 109.68666 * 256.80655 * 30 29 24 46 46 H 1.09001 * 109.71281 * 136.27042 * 30 29 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.7086 -4.1442 1.2687 12 6 1.8025 -5.2493 1.7469 13 6 2.1123 -6.5633 1.4498 14 6 1.2718 -7.5724 1.8940 15 6 0.1460 -7.2206 2.6231 16 6 -0.0988 -5.8853 2.8814 17 7 0.7234 -4.9517 2.4435 18 6 2.6139 -4.1480 -1.1661 19 8 3.3251 -5.1305 -1.1654 20 6 2.1897 -3.5259 -2.4715 21 1 2.1136 -2.4452 -2.3511 22 6 3.2273 -3.8469 -3.5507 23 6 2.9384 -3.0113 -4.8037 24 6 1.4795 -3.1667 -5.1533 25 7 0.8709 -2.8737 -6.3144 26 1 1.2964 -2.5103 -7.1067 27 7 -0.4896 -3.1874 -6.1770 28 6 -0.6840 -3.6526 -4.9672 29 6 0.5395 -3.6494 -4.3011 30 6 0.8261 -4.0910 -2.8876 31 1 -0.4850 0.8400 -0.0004 32 1 0.6249 -2.5571 -0.8897 33 1 0.6241 -2.5567 0.8903 34 1 2.7338 -3.3477 2.0122 35 1 3.7149 -4.5369 1.1227 36 1 2.9978 -6.8009 0.8792 37 1 1.4887 -8.6079 1.6773 38 1 -0.5305 -7.9805 2.9853 39 1 -0.9758 -5.6027 3.4448 40 1 4.2239 -3.6105 -3.1781 41 1 3.1750 -4.9065 -3.8009 42 1 3.5539 -3.3647 -5.6310 43 1 3.1585 -1.9624 -4.6046 44 1 -1.6280 -3.9807 -4.5579 45 1 0.8501 -5.1797 -2.8408 46 1 0.0523 -3.7119 -2.2200 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270168057.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:38 Heat of formation + Delta-G solvation = 64.837310 kcal Electronic energy + Delta-G solvation = -29961.627523 eV Core-core repulsion = 26045.245398 eV Total energy + Delta-G solvation = -3916.382126 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.33058 -40.04912 -39.07996 -35.85233 -35.04783 -32.81628 -32.39890 -32.14502 -31.39025 -29.33604 -29.27320 -27.50043 -26.08700 -23.71310 -23.28328 -22.81126 -22.49518 -21.76085 -21.18895 -18.73831 -18.17357 -17.14676 -16.81501 -16.55778 -16.27085 -15.65419 -15.47360 -15.21497 -14.88474 -14.39520 -14.27884 -14.18799 -13.66281 -13.52051 -13.28504 -13.06746 -12.82708 -12.80263 -12.64463 -12.40729 -12.19894 -11.69517 -11.56159 -11.48920 -11.34781 -11.22197 -10.92451 -10.72265 -10.53336 -10.45782 -10.22803 -10.09340 -9.76400 -9.62098 -9.31500 -9.17148 -9.05537 -8.69074 -8.48522 -8.04650 -7.74371 -6.12631 -4.19603 1.33202 1.54279 2.04578 2.98892 3.00666 3.24187 3.31222 3.32956 3.37210 3.77628 4.27718 4.37105 4.62751 4.77107 4.93835 4.99760 5.04258 5.07047 5.14861 5.21580 5.28385 5.40239 5.42550 5.47520 5.63494 5.74581 5.81481 5.81874 5.90173 5.91420 6.03458 6.11664 6.15728 6.24322 6.25093 6.38793 6.41460 6.43648 6.56208 6.71538 6.82777 6.88279 6.95273 7.32865 7.43652 7.56975 7.81391 7.83552 8.11293 8.29834 8.38887 8.82458 8.99893 9.47203 10.94076 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007520 B = 0.004958 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3722.566940 B = 5645.762141 C = 7829.397351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.067 3.933 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.538 4.538 8 H 0.060 0.940 9 C 0.234 3.766 10 N -0.585 5.585 11 C 0.167 3.833 12 C 0.121 3.879 13 C -0.150 4.150 14 C -0.084 4.084 15 C -0.182 4.182 16 C 0.094 3.906 17 N -0.464 5.464 18 C 0.524 3.476 19 O -0.574 6.574 20 C -0.106 4.106 21 H 0.116 0.884 22 C -0.089 4.089 23 C -0.057 4.057 24 C 0.090 3.910 25 N -0.474 5.474 26 H 0.434 0.566 27 N -0.306 5.306 28 C 0.061 3.939 29 C -0.224 4.224 30 C -0.027 4.027 31 H 0.264 0.736 32 H 0.042 0.958 33 H 0.046 0.954 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.138 0.862 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.152 0.848 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.078 0.922 43 H 0.088 0.912 44 H 0.182 0.818 45 H 0.066 0.934 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.535 -10.617 -3.631 11.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.136 4.136 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.577 4.577 8 H 0.078 0.922 9 C 0.115 3.885 10 N -0.314 5.314 11 C 0.043 3.957 12 C -0.018 4.018 13 C -0.171 4.171 14 C -0.110 4.110 15 C -0.202 4.202 16 C -0.063 4.063 17 N -0.173 5.173 18 C 0.313 3.687 19 O -0.455 6.455 20 C -0.127 4.127 21 H 0.134 0.866 22 C -0.127 4.127 23 C -0.096 4.096 24 C -0.040 4.040 25 N -0.182 5.182 26 H 0.277 0.723 27 N -0.128 5.128 28 C -0.124 4.124 29 C -0.235 4.235 30 C -0.065 4.065 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.114 0.886 35 H 0.105 0.895 36 H 0.156 0.844 37 H 0.146 0.854 38 H 0.146 0.854 39 H 0.169 0.831 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.097 0.903 43 H 0.107 0.893 44 H 0.199 0.801 45 H 0.085 0.915 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.967 -9.803 -4.529 10.976 hybrid contribution 0.863 0.193 0.237 0.916 sum 2.830 -9.610 -4.292 10.898 Atomic orbital electron populations 1.69925 1.05928 1.27137 1.49437 1.24907 0.94781 0.99059 0.94852 0.86584 0.79915 0.83334 0.78142 1.20659 1.21140 1.19809 1.21462 0.93483 0.90514 1.52212 0.92157 1.19590 0.87479 0.82097 0.99367 1.48224 1.45303 1.34494 1.03354 1.20142 0.94467 0.93839 0.87256 1.21881 0.93055 0.94001 0.92849 1.22127 1.01378 0.93406 1.00163 1.21539 0.94039 0.99638 0.95822 1.22080 0.98830 0.97995 1.01311 1.22757 0.97832 0.88903 0.96834 1.67599 1.03064 1.37646 1.09025 1.20469 0.79541 0.83036 0.85700 1.90555 1.40028 1.26891 1.88057 1.21362 0.95536 1.03870 0.91920 0.86589 1.21310 0.98820 0.99976 0.92637 1.20409 0.88180 1.02174 0.98835 1.20973 0.96302 0.99577 0.87144 1.45949 1.06811 1.52745 1.12681 0.72290 1.77419 0.92779 1.22614 1.20026 1.23571 0.98948 0.98614 0.91292 1.19849 0.92411 1.13033 0.98181 1.19886 0.95926 0.99516 0.91219 0.92610 0.94003 0.93622 0.88555 0.89526 0.84405 0.85376 0.85378 0.83113 0.90648 0.91015 0.90305 0.89327 0.80149 0.91539 0.89957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.38 13.29 55.43 0.74 -23.65 16 2 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.89 20.37 29.54 -169.99 -5.02 15.35 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 7 C -0.54 -13.61 8.74 -34.44 -0.30 -13.91 16 8 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 9 C 0.23 5.46 4.76 -5.19 -0.02 5.44 16 10 N -0.58 -11.87 2.44 -176.44 -0.43 -12.30 16 11 C 0.17 3.10 5.68 -5.19 -0.03 3.07 16 12 C 0.12 2.12 6.36 -82.59 -0.53 1.60 16 13 C -0.15 -2.31 9.72 -39.44 -0.38 -2.69 16 14 C -0.08 -1.08 10.18 -39.28 -0.40 -1.48 16 15 C -0.18 -2.24 10.11 -39.44 -0.40 -2.64 16 16 C 0.09 1.36 11.18 -17.55 -0.20 1.17 16 17 N -0.46 -8.33 10.27 -9.47 -0.10 -8.43 16 18 C 0.52 10.17 6.72 -10.99 -0.07 10.10 16 19 O -0.57 -11.57 15.67 5.56 0.09 -11.49 16 20 C -0.11 -1.85 1.64 -91.53 -0.15 -2.00 16 21 H 0.12 2.30 6.52 -51.93 -0.34 1.97 16 22 C -0.09 -1.29 4.61 -26.49 -0.12 -1.42 16 23 C -0.06 -0.70 6.30 -27.64 -0.17 -0.87 16 24 C 0.09 1.29 7.08 -82.33 -0.58 0.71 16 25 N -0.47 -6.37 7.34 33.48 0.25 -6.12 16 26 H 0.43 4.28 8.96 -182.45 -1.64 2.65 16 27 N -0.31 -4.78 12.71 30.54 0.39 -4.39 16 28 C 0.06 0.94 12.00 -17.48 -0.21 0.73 16 29 C -0.22 -3.57 5.91 -105.05 -0.62 -4.19 16 30 C -0.03 -0.45 5.38 -27.63 -0.15 -0.60 16 31 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.04 1.01 5.01 -51.93 -0.26 0.75 16 33 H 0.05 1.18 8.09 -51.93 -0.42 0.76 16 34 H 0.10 1.84 8.07 -51.93 -0.42 1.42 16 35 H 0.09 1.50 7.40 -51.93 -0.38 1.11 16 36 H 0.14 2.09 7.81 -52.49 -0.41 1.68 16 37 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 38 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.15 1.78 8.06 -52.48 -0.42 1.36 16 40 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 41 H 0.07 1.05 8.11 -51.93 -0.42 0.63 16 42 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.09 1.07 8.14 -51.92 -0.42 0.65 16 44 H 0.18 2.29 8.06 -52.49 -0.42 1.87 16 45 H 0.07 1.09 8.12 -51.93 -0.42 0.66 16 46 H 0.08 1.49 6.50 -51.93 -0.34 1.15 16 LS Contribution 381.74 15.07 5.75 5.75 Total: -1.00 -31.16 381.74 -10.33 -41.49 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -7.55 Total: 9.12 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -4.44 Total: -5.34 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: 0.84 Total: -54.89 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.09 Total: -11.49 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.16 -10.33 -41.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270168057.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.325 kcal (2) G-P(sol) polarization free energy of solvation -31.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds