Wall clock time and date at job start Tue Mar 31 2020 22:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99706 * 2 1 4 4 H 1.48496 * 109.47236 * 269.99455 * 3 2 1 5 5 H 1.48503 * 109.47398 * 29.99696 * 3 2 1 6 6 H 1.48500 * 109.46995 * 149.99558 * 3 2 1 7 7 C 1.37878 * 119.99921 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99667 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00172 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47301 * 179.97438 * 9 7 2 11 11 C 1.46498 * 119.99869 * 88.24658 * 10 9 7 12 12 C 1.50700 * 109.46886 * 90.00342 * 11 10 9 13 13 C 1.38229 * 119.61422 * 95.00066 * 12 11 10 14 14 C 1.38632 * 119.15559 * 180.02562 * 13 12 11 15 15 C 1.38668 * 118.42524 * 0.02562 * 14 13 12 16 16 C 1.38188 * 119.15919 * 359.97438 * 15 14 13 17 17 N 1.31851 * 119.61770 * 275.01778 * 12 11 10 18 18 C 1.34775 * 119.99854 * 268.25007 * 10 9 7 19 19 O 1.21281 * 119.99813 * 185.34547 * 18 10 9 20 20 C 1.50701 * 120.00310 * 5.34779 * 18 10 9 21 21 H 1.09006 * 109.46243 * 33.94638 * 20 18 10 22 22 C 1.53109 * 109.46394 * 153.91515 * 20 18 10 23 23 C 1.53357 * 109.51244 * 190.27915 * 22 20 18 24 24 C 1.50821 * 108.38657 * 310.08182 * 23 22 20 25 25 N 1.34332 * 128.03161 * 196.64672 * 24 23 22 26 26 H 0.97000 * 126.08979 * 359.79907 * 25 24 23 27 27 N 1.40296 * 107.81415 * 179.78397 * 25 24 23 28 28 C 1.31067 * 108.27297 * 0.06347 * 27 25 24 29 29 C 1.35745 * 124.12364 * 16.51427 * 24 23 22 30 30 C 1.50840 * 124.11272 * 0.22753 * 29 24 23 31 31 H 0.96995 * 120.00232 * 0.02562 * 1 2 3 32 32 H 1.08999 * 109.47082 * 60.00303 * 9 7 2 33 33 H 1.09002 * 109.47498 * 300.00271 * 9 7 2 34 34 H 1.08994 * 109.47377 * 330.00364 * 11 10 9 35 35 H 1.08998 * 109.47113 * 210.00431 * 11 10 9 36 36 H 1.07993 * 120.42502 * 0.04403 * 13 12 11 37 37 H 1.07997 * 120.78803 * 180.02562 * 14 13 12 38 38 H 1.07999 * 120.42172 * 180.02562 * 15 14 13 39 39 H 1.08006 * 119.61309 * 179.72637 * 16 15 14 40 40 H 1.08996 * 109.46478 * 310.30180 * 22 20 18 41 41 H 1.09001 * 109.45920 * 70.28112 * 22 20 18 42 42 H 1.08996 * 109.69986 * 190.33885 * 23 22 20 43 43 H 1.09010 * 109.69324 * 69.81072 * 23 22 20 44 44 H 1.08000 * 125.96316 * 179.97438 * 28 27 25 45 45 H 1.08997 * 109.68666 * 256.80655 * 30 29 24 46 46 H 1.09001 * 109.71281 * 136.27042 * 30 29 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.7086 -4.1442 1.2687 12 6 1.8025 -5.2493 1.7469 13 6 2.1123 -6.5633 1.4498 14 6 1.2718 -7.5724 1.8940 15 6 0.1460 -7.2206 2.6231 16 6 -0.0988 -5.8853 2.8814 17 7 0.7234 -4.9517 2.4435 18 6 2.6139 -4.1480 -1.1661 19 8 3.3251 -5.1305 -1.1654 20 6 2.1897 -3.5259 -2.4715 21 1 2.1136 -2.4452 -2.3511 22 6 3.2273 -3.8469 -3.5507 23 6 2.9384 -3.0113 -4.8037 24 6 1.4795 -3.1667 -5.1533 25 7 0.8709 -2.8737 -6.3144 26 1 1.2964 -2.5103 -7.1067 27 7 -0.4896 -3.1874 -6.1770 28 6 -0.6840 -3.6526 -4.9672 29 6 0.5395 -3.6494 -4.3011 30 6 0.8261 -4.0910 -2.8876 31 1 -0.4850 0.8400 -0.0004 32 1 0.6249 -2.5571 -0.8897 33 1 0.6241 -2.5567 0.8903 34 1 2.7338 -3.3477 2.0122 35 1 3.7149 -4.5369 1.1227 36 1 2.9978 -6.8009 0.8792 37 1 1.4887 -8.6079 1.6773 38 1 -0.5305 -7.9805 2.9853 39 1 -0.9758 -5.6027 3.4448 40 1 4.2239 -3.6105 -3.1781 41 1 3.1750 -4.9065 -3.8009 42 1 3.5539 -3.3647 -5.6310 43 1 3.1585 -1.9624 -4.6046 44 1 -1.6280 -3.9807 -4.5579 45 1 0.8501 -5.1797 -2.8408 46 1 0.0523 -3.7119 -2.2200 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270168057.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:38 Heat of formation + Delta-G solvation = 46.688687 kcal Electronic energy + Delta-G solvation = -29962.414507 eV Core-core repulsion = 26045.245398 eV Total energy + Delta-G solvation = -3917.169109 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.50980 -41.34376 -40.48152 -37.16158 -36.69108 -34.64270 -33.61767 -33.31719 -32.73695 -30.51895 -30.51608 -29.30079 -27.55940 -25.20968 -24.57510 -24.24835 -23.78145 -22.93557 -22.43935 -20.08123 -19.55834 -18.66168 -18.28462 -17.99855 -17.66078 -17.02960 -16.91015 -16.44152 -16.34878 -15.98303 -15.64280 -15.33094 -14.94558 -14.78550 -14.65247 -14.25254 -14.18196 -14.13946 -13.98561 -13.82347 -13.60825 -13.32594 -13.04242 -12.87565 -12.74418 -12.59843 -12.58263 -12.49217 -12.05367 -11.74194 -11.71075 -11.66704 -11.48258 -10.77890 -10.65333 -10.52640 -10.44156 -10.32490 -9.89049 -9.42085 -9.24956 -8.14586 -6.28619 0.18232 0.43837 0.90328 1.42108 1.44336 1.53637 1.73872 1.82358 1.97158 2.30143 2.46912 3.03268 3.15897 3.42205 3.62914 3.69409 3.83806 3.87233 3.94229 4.06142 4.15224 4.22613 4.24536 4.30393 4.46929 4.53976 4.59370 4.62562 4.64405 4.74719 4.81729 4.86146 4.87826 4.92089 4.98193 5.03542 5.18566 5.27778 5.28926 5.31188 5.39576 5.40516 5.66769 5.70815 5.83648 5.87629 6.11733 6.43151 6.62291 6.70766 6.86474 7.17075 7.33738 7.45180 8.91099 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007520 B = 0.004958 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3722.566940 B = 5645.762141 C = 7829.397351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.022 3.978 3 Si 0.953 3.047 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.541 4.541 8 H 0.057 0.943 9 C 0.258 3.742 10 N -0.589 5.589 11 C 0.167 3.833 12 C 0.096 3.904 13 C -0.158 4.158 14 C -0.079 4.079 15 C -0.165 4.165 16 C 0.078 3.922 17 N -0.507 5.507 18 C 0.522 3.478 19 O -0.580 6.580 20 C -0.101 4.101 21 H 0.090 0.910 22 C -0.083 4.083 23 C -0.050 4.050 24 C 0.097 3.903 25 N -0.461 5.461 26 H 0.450 0.550 27 N -0.325 5.325 28 C 0.053 3.947 29 C -0.254 4.254 30 C -0.015 4.015 31 H 0.265 0.735 32 H 0.031 0.969 33 H 0.014 0.986 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.136 0.864 37 H 0.165 0.835 38 H 0.171 0.829 39 H 0.172 0.828 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.118 0.882 43 H 0.095 0.905 44 H 0.197 0.803 45 H 0.067 0.933 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.342 -11.818 -4.629 13.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.179 4.179 3 Si 0.779 3.221 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.193 1.193 7 C -0.580 4.580 8 H 0.075 0.925 9 C 0.137 3.863 10 N -0.318 5.318 11 C 0.043 3.957 12 C -0.042 4.042 13 C -0.179 4.179 14 C -0.105 4.105 15 C -0.185 4.185 16 C -0.079 4.079 17 N -0.217 5.217 18 C 0.311 3.689 19 O -0.462 6.462 20 C -0.123 4.123 21 H 0.108 0.892 22 C -0.122 4.122 23 C -0.089 4.089 24 C -0.034 4.034 25 N -0.171 5.171 26 H 0.297 0.703 27 N -0.148 5.148 28 C -0.132 4.132 29 C -0.265 4.265 30 C -0.053 4.053 31 H 0.074 0.926 32 H 0.049 0.951 33 H 0.033 0.967 34 H 0.097 0.903 35 H 0.113 0.887 36 H 0.154 0.846 37 H 0.183 0.817 38 H 0.188 0.812 39 H 0.189 0.811 40 H 0.097 0.903 41 H 0.092 0.908 42 H 0.136 0.864 43 H 0.113 0.887 44 H 0.214 0.786 45 H 0.085 0.915 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.799 -11.012 -5.549 12.645 hybrid contribution 0.578 0.471 0.614 0.966 sum 3.377 -10.542 -4.935 12.120 Atomic orbital electron populations 1.70041 1.07334 1.27859 1.50601 1.25639 0.95460 1.02219 0.94550 0.85625 0.78723 0.79363 0.78409 1.19784 1.21143 1.19274 1.21669 0.93356 0.91444 1.51511 0.92481 1.19070 0.87377 0.82661 0.97190 1.48161 1.44996 1.34048 1.04600 1.20144 0.95392 0.94005 0.86129 1.21634 0.93533 0.94403 0.94616 1.22156 1.02021 0.93159 1.00543 1.21977 0.93258 1.00715 0.94576 1.22502 0.98733 0.97805 0.99417 1.23247 0.97955 0.89758 0.96925 1.67497 1.04058 1.39777 1.10360 1.20815 0.79179 0.82906 0.85980 1.90535 1.40322 1.27117 1.88181 1.21332 0.97031 1.01907 0.92003 0.89206 1.21285 0.97777 1.00547 0.92581 1.20471 0.87307 1.02236 0.98877 1.21243 0.97041 0.98140 0.86952 1.45950 1.06148 1.51917 1.13052 0.70327 1.77374 0.93972 1.23280 1.20153 1.23885 0.99594 0.98452 0.91264 1.19902 0.93490 1.15094 0.98001 1.19673 0.94739 0.99290 0.91637 0.92634 0.95106 0.96744 0.90320 0.88732 0.84596 0.81740 0.81189 0.81100 0.90313 0.90848 0.86399 0.88709 0.78634 0.91474 0.92414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.04 13.29 21.45 0.28 -51.75 16 2 C 0.02 1.15 5.46 84.65 0.46 1.61 16 3 Si 0.95 42.14 29.54 68.60 2.03 44.16 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.54 -28.30 8.74 25.60 0.22 -28.08 16 8 H 0.06 2.97 7.81 -2.91 -0.02 2.94 16 9 C 0.26 12.72 4.76 85.63 0.41 13.13 16 10 N -0.59 -25.07 2.44 -830.52 -2.03 -27.10 16 11 C 0.17 6.52 5.68 85.63 0.49 7.01 16 12 C 0.10 3.48 6.36 42.55 0.27 3.75 16 13 C -0.16 -4.80 9.72 22.36 0.22 -4.58 16 14 C -0.08 -1.84 10.18 22.47 0.23 -1.62 16 15 C -0.16 -3.61 10.11 22.36 0.23 -3.38 16 16 C 0.08 2.21 11.18 84.67 0.95 3.16 16 17 N -0.51 -18.80 10.27 -183.88 -1.89 -20.69 16 18 C 0.52 20.77 6.72 87.66 0.59 21.36 16 19 O -0.58 -23.48 15.67 -3.03 -0.05 -23.52 16 20 C -0.10 -3.61 1.64 -11.38 -0.02 -3.63 16 21 H 0.09 3.69 6.52 -2.38 -0.02 3.67 16 22 C -0.08 -2.33 4.61 30.75 0.14 -2.18 16 23 C -0.05 -1.11 6.30 30.01 0.19 -0.92 16 24 C 0.10 2.65 7.08 41.64 0.29 2.94 16 25 N -0.46 -11.51 7.34 -47.99 -0.35 -11.87 16 26 H 0.45 7.75 8.96 -213.19 -1.91 5.84 16 27 N -0.32 -9.82 12.71 -57.28 -0.73 -10.55 16 28 C 0.05 1.60 12.00 85.06 1.02 2.63 16 29 C -0.25 -8.05 5.91 -20.14 -0.12 -8.17 16 30 C -0.01 -0.50 5.38 30.01 0.16 -0.34 16 31 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 32 H 0.03 1.59 5.01 -2.39 -0.01 1.58 16 33 H 0.01 0.80 8.09 -2.39 -0.02 0.78 16 34 H 0.08 3.24 8.07 -2.39 -0.02 3.22 16 35 H 0.09 3.42 7.40 -2.39 -0.02 3.40 16 36 H 0.14 4.08 7.81 -2.91 -0.02 4.06 16 37 H 0.17 2.60 8.06 -2.91 -0.02 2.57 16 38 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 39 H 0.17 3.88 8.06 -2.91 -0.02 3.86 16 40 H 0.08 2.15 8.10 -2.39 -0.02 2.13 16 41 H 0.07 2.04 8.11 -2.39 -0.02 2.02 16 42 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 44 H 0.20 5.00 8.06 -2.91 -0.02 4.98 16 45 H 0.07 2.24 8.12 -2.39 -0.02 2.22 16 46 H 0.06 2.23 6.50 -2.39 -0.02 2.22 16 Total: -1.00 -69.32 381.74 2.10 -67.22 By element: Atomic # 1 Polarization: 32.32 SS G_CDS: -0.90 Total: 31.42 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: 5.73 Total: 2.68 kcal Atomic # 7 Polarization: -117.25 SS G_CDS: -4.71 Total: -121.96 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.05 Total: -23.52 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.16 kcal Total: -69.32 2.10 -67.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270168057.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.906 kcal (2) G-P(sol) polarization free energy of solvation -69.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds