Wall clock time and date at job start Tue Mar 31 2020 23:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 119.99998 * 2 1 4 4 H 1.48504 * 109.47458 * 274.89651 * 3 2 1 5 5 H 1.48501 * 109.46899 * 34.89330 * 3 2 1 6 6 H 1.48496 * 109.47534 * 154.89309 * 3 2 1 7 7 C 1.38812 * 120.00219 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99945 * 339.75277 * 7 2 1 9 9 N 1.36935 * 120.00224 * 159.75033 * 7 2 1 10 10 C 1.46927 * 120.62874 * 332.80269 * 9 7 2 11 11 C 1.53190 * 108.77495 * 233.58420 * 10 9 7 12 12 C 1.53047 * 109.31305 * 305.36631 * 11 10 9 13 13 C 1.53038 * 109.53629 * 61.36563 * 12 11 10 14 14 H 1.08996 * 109.49763 * 58.62055 * 13 12 11 15 15 C 1.52999 * 109.49537 * 178.68397 * 13 12 11 16 16 N 1.46502 * 109.46999 * 185.00124 * 15 13 12 17 17 C 1.34777 * 119.99877 * 180.02562 * 16 15 13 18 18 O 1.21546 * 120.00331 * 359.97438 * 17 16 15 19 19 C 1.47865 * 119.99719 * 180.02562 * 17 16 15 20 20 C 1.40630 * 120.26413 * 359.97438 * 19 17 16 21 21 N 1.30851 * 121.65962 * 179.74521 * 20 19 17 22 22 C 1.33588 * 121.58306 * 0.24871 * 21 20 19 23 23 C 1.40637 * 121.62637 * 180.02562 * 22 21 20 24 24 N 1.31159 * 120.04038 * 179.97438 * 23 22 21 25 25 C 1.32488 * 122.88758 * 0.02646 * 24 23 22 26 26 C 1.36314 * 121.71502 * 359.97438 * 25 24 23 27 27 C 1.40605 * 118.65129 * 0.02562 * 26 25 24 28 28 C 1.38998 * 120.25870 * 180.29810 * 19 17 16 29 29 C 1.46925 * 120.63186 * 152.77966 * 9 7 2 30 30 H 0.97000 * 120.00116 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.58507 * 113.79878 * 10 9 7 32 32 H 1.08999 * 109.59030 * 353.37272 * 10 9 7 33 33 H 1.08997 * 109.49930 * 185.41790 * 11 10 9 34 34 H 1.08993 * 109.52528 * 65.33651 * 11 10 9 35 35 H 1.08999 * 109.45960 * 301.34657 * 12 11 10 36 36 H 1.08995 * 109.44704 * 181.38144 * 12 11 10 37 37 H 1.09002 * 109.47502 * 65.00228 * 15 13 12 38 38 H 1.08998 * 109.47013 * 305.00048 * 15 13 12 39 39 H 0.96992 * 120.00194 * 359.97438 * 16 15 13 40 40 H 1.08003 * 119.16679 * 0.02562 * 20 19 17 41 41 H 1.07998 * 119.98191 * 359.97438 * 23 22 21 42 42 H 1.08006 * 119.14128 * 179.97438 * 25 24 23 43 43 H 1.07997 * 120.67625 * 180.02562 * 26 25 24 44 44 H 1.08000 * 121.10621 * 359.94591 * 28 19 17 45 45 H 1.09005 * 109.58504 * 6.62910 * 29 9 7 46 46 H 1.09004 * 109.58875 * 246.20574 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3942 2.1062 -1.3950 5 1 1.5031 2.6205 0.8009 6 1 3.5956 1.4126 0.5940 7 6 2.0103 -1.2021 0.0005 8 1 1.5204 -2.1084 0.3246 9 7 3.3162 -1.2390 -0.4099 10 6 3.8267 -0.2523 -1.3714 11 6 4.4783 -0.9957 -2.5417 12 6 5.5409 -1.9562 -2.0026 13 6 4.8805 -2.9864 -1.0835 14 1 4.1174 -3.5324 -1.6381 15 6 5.9383 -3.9659 -0.5711 16 7 5.2889 -5.0207 0.2112 17 6 6.0291 -6.0011 0.7657 18 8 7.2353 -6.0103 0.6165 19 6 5.3735 -7.0660 1.5547 20 6 3.9783 -7.0610 1.7305 21 7 3.3695 -7.9923 2.4191 22 6 4.0444 -8.9918 2.9936 23 6 3.3910 -9.9935 3.7335 24 7 4.0845 -10.9611 4.2841 25 6 5.4022 -11.0507 4.1805 26 6 6.1306 -10.1315 3.4857 27 6 5.4556 -9.0643 2.8673 28 6 6.1323 -8.0762 2.1342 29 6 4.2335 -2.2655 0.1033 30 1 -0.4850 0.8400 0.0004 31 1 4.5667 0.3831 -0.8848 32 1 3.0030 0.3590 -1.7401 33 1 4.9456 -0.2767 -3.2145 34 1 3.7189 -1.5600 -3.0829 35 1 6.2870 -1.3941 -1.4410 36 1 6.0229 -2.4685 -2.8351 37 1 6.6517 -3.4338 0.0582 38 1 6.4615 -4.4110 -1.4173 39 1 4.3264 -5.0132 0.3306 40 1 3.3941 -6.2710 1.2821 41 1 2.3175 -9.9661 3.8484 42 1 5.9127 -11.8735 4.6590 43 1 7.2043 -10.2211 3.4117 44 1 7.2059 -8.1033 2.0197 45 1 3.6780 -2.9827 0.7077 46 1 5.0066 -1.7943 0.7102 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282058322.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:11 Heat of formation + Delta-G solvation = 51.195691 kcal Electronic energy + Delta-G solvation = -28413.525680 eV Core-core repulsion = 24496.552010 eV Total energy + Delta-G solvation = -3916.973671 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.65989 -39.99466 -38.38851 -37.92867 -35.21349 -34.11295 -33.22574 -32.17138 -30.95093 -30.81628 -30.66807 -26.76602 -25.42288 -25.00650 -24.79278 -22.99806 -22.17434 -21.69300 -21.15709 -19.60805 -18.88242 -18.32967 -17.82878 -16.87368 -16.55554 -15.91943 -15.71636 -15.43815 -15.40263 -15.10666 -14.66176 -14.42760 -14.22931 -13.94959 -13.67477 -13.55948 -13.44639 -13.27673 -13.08492 -12.85453 -12.67581 -12.58633 -12.19773 -11.72798 -11.53573 -11.25050 -10.88399 -10.74440 -10.61110 -10.50285 -10.25955 -10.17400 -9.95396 -9.77352 -9.75764 -9.71564 -9.48654 -9.18405 -8.90916 -8.67303 -7.04008 -5.99825 -3.36478 -0.36696 0.05604 1.31645 2.17997 2.88424 2.96964 3.28647 3.45535 3.47614 3.63965 3.64858 3.93155 4.02020 4.18917 4.22096 4.30582 4.48491 4.56825 4.72380 4.79575 5.00815 5.07034 5.09807 5.14478 5.19334 5.26978 5.36402 5.44951 5.54395 5.57466 5.70399 5.71618 5.86301 5.93345 6.02517 6.03165 6.07714 6.19669 6.27996 6.32585 6.47952 6.49118 6.61712 6.64552 6.90109 7.22018 7.28355 7.49514 7.89387 7.93434 8.26537 8.87574 9.66526 10.03804 11.15864 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016139 B = 0.002413 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.509880 B =11599.244291 C =12965.974923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.024 3.976 3 Si 0.883 3.117 4 H -0.289 1.289 5 H -0.304 1.304 6 H -0.270 1.270 7 C -0.263 4.263 8 H 0.086 0.914 9 N -0.605 5.605 10 C 0.124 3.876 11 C -0.134 4.134 12 C -0.100 4.100 13 C -0.121 4.121 14 H 0.080 0.920 15 C 0.127 3.873 16 N -0.714 5.714 17 C 0.562 3.438 18 O -0.537 6.537 19 C -0.170 4.170 20 C 0.163 3.837 21 N -0.452 5.452 22 C 0.082 3.918 23 C 0.165 3.835 24 N -0.469 5.469 25 C 0.072 3.928 26 C -0.134 4.134 27 C -0.088 4.088 28 C 0.006 3.994 29 C 0.155 3.845 30 H 0.263 0.737 31 H 0.025 0.975 32 H 0.071 0.929 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.054 0.946 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.404 0.596 40 H 0.170 0.830 41 H 0.176 0.824 42 H 0.161 0.839 43 H 0.145 0.855 44 H 0.158 0.842 45 H 0.059 0.941 46 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.198 -17.993 2.776 22.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.175 4.175 3 Si 0.714 3.286 4 H -0.217 1.217 5 H -0.232 1.232 6 H -0.195 1.195 7 C -0.391 4.391 8 H 0.103 0.897 9 N -0.329 5.329 10 C -0.002 4.002 11 C -0.174 4.174 12 C -0.139 4.139 13 C -0.142 4.142 14 H 0.098 0.902 15 C 0.004 3.996 16 N -0.366 5.366 17 C 0.347 3.653 18 O -0.415 6.415 19 C -0.177 4.177 20 C -0.012 4.012 21 N -0.160 5.160 22 C -0.041 4.041 23 C -0.008 4.008 24 N -0.178 5.178 25 C -0.070 4.070 26 C -0.154 4.154 27 C -0.095 4.095 28 C -0.020 4.020 29 C 0.029 3.971 30 H 0.073 0.927 31 H 0.043 0.957 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.241 0.759 40 H 0.187 0.813 41 H 0.193 0.807 42 H 0.178 0.822 43 H 0.163 0.837 44 H 0.176 0.824 45 H 0.078 0.922 46 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 12.663 -18.676 3.360 22.813 hybrid contribution 1.280 1.757 -0.581 2.250 sum 13.942 -16.918 2.779 22.098 Atomic orbital electron populations 1.69828 1.05723 1.26609 1.52834 1.25266 0.95218 0.97633 0.99391 0.86943 0.80101 0.84659 0.76912 1.21697 1.23201 1.19493 1.18892 0.84676 0.94751 1.40743 0.89661 1.44323 1.08397 1.32762 1.47373 1.21356 0.97169 0.92010 0.89626 1.21998 0.98052 0.98554 0.98761 1.21340 0.97758 0.96699 0.98058 1.21978 0.96995 0.95867 0.99320 0.90184 1.21528 0.95679 0.87539 0.94898 1.46002 1.11433 1.26205 1.52930 1.17909 0.86689 0.81385 0.79302 1.90783 1.13743 1.76233 1.60718 1.21163 0.95522 0.98329 1.02676 1.23273 0.90719 0.95308 0.91884 1.67927 1.38826 1.01551 1.07742 1.20100 0.90403 0.95636 0.97991 1.23209 1.00801 0.86935 0.89895 1.67479 1.09128 1.22775 1.18392 1.22321 0.89517 0.98500 0.96696 1.21993 1.01646 0.94085 0.97713 1.18954 0.94434 0.96807 0.99273 1.21916 1.01195 0.89523 0.89400 1.20936 0.92477 0.91293 0.92386 0.92727 0.95669 0.91091 0.92648 0.91671 0.92271 0.92707 0.91123 0.91383 0.75907 0.81273 0.80657 0.82223 0.83721 0.82416 0.92222 0.95773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.16 13.97 55.49 0.78 -26.39 16 2 C 0.02 0.68 5.24 -17.43 -0.09 0.58 16 3 Si 0.88 21.92 24.35 -169.99 -4.14 17.78 16 4 H -0.29 -6.95 6.70 56.52 0.38 -6.57 16 5 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 6 H -0.27 -6.57 6.45 56.52 0.36 -6.20 16 7 C -0.26 -6.98 10.04 -15.06 -0.15 -7.13 16 8 H 0.09 2.39 8.06 -52.48 -0.42 1.97 16 9 N -0.61 -13.46 2.77 -172.32 -0.48 -13.94 16 10 C 0.12 2.57 4.19 -3.71 -0.02 2.55 16 11 C -0.13 -2.20 6.08 -26.61 -0.16 -2.36 16 12 C -0.10 -1.39 5.17 -26.69 -0.14 -1.53 16 13 C -0.12 -1.69 2.37 -90.50 -0.21 -1.90 16 14 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 15 C 0.13 1.54 5.07 -4.04 -0.02 1.52 16 16 N -0.71 -8.02 5.28 -61.24 -0.32 -8.35 16 17 C 0.56 6.82 7.78 -12.32 -0.10 6.73 16 18 O -0.54 -8.05 16.39 5.32 0.09 -7.97 16 19 C -0.17 -1.80 5.89 -104.77 -0.62 -2.41 16 20 C 0.16 1.66 10.68 -17.07 -0.18 1.48 16 21 N -0.45 -5.11 10.33 -10.65 -0.11 -5.22 16 22 C 0.08 0.88 6.62 -84.81 -0.56 0.31 16 23 C 0.16 1.57 11.25 -16.93 -0.19 1.38 16 24 N -0.47 -4.50 10.28 -13.11 -0.13 -4.63 16 25 C 0.07 0.54 11.08 -17.96 -0.20 0.35 16 26 C -0.13 -0.98 9.88 -39.38 -0.39 -1.37 16 27 C -0.09 -0.84 5.75 -106.80 -0.61 -1.45 16 28 C 0.01 0.06 9.51 -38.48 -0.37 -0.30 16 29 C 0.16 2.73 5.60 -3.71 -0.02 2.71 16 30 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.03 0.52 6.98 -51.93 -0.36 0.16 16 32 H 0.07 1.64 4.50 -51.93 -0.23 1.40 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.40 4.00 5.73 -40.82 -0.23 3.76 16 40 H 0.17 1.39 6.37 -52.48 -0.33 1.06 16 41 H 0.18 1.33 8.06 -52.49 -0.42 0.91 16 42 H 0.16 0.73 8.06 -52.48 -0.42 0.31 16 43 H 0.15 0.64 8.06 -52.49 -0.42 0.22 16 44 H 0.16 1.32 7.71 -52.49 -0.40 0.91 16 45 H 0.06 1.00 7.14 -51.93 -0.37 0.63 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 369.93 15.07 5.57 5.57 Total: -1.00 -33.34 369.93 -8.98 -42.32 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -6.21 Total: 1.67 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -4.03 Total: -0.85 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: -0.27 Total: -58.53 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: 0.09 Total: -7.97 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.14 Total: 17.78 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.34 -8.98 -42.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282058322.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.515 kcal (2) G-P(sol) polarization free energy of solvation -33.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds