Wall clock time and date at job start Tue Mar 31 2020 23:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 119.99998 * 2 1 4 4 H 1.48504 * 109.47458 * 274.89651 * 3 2 1 5 5 H 1.48501 * 109.46899 * 34.89330 * 3 2 1 6 6 H 1.48496 * 109.47534 * 154.89309 * 3 2 1 7 7 C 1.38812 * 120.00219 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99945 * 339.75277 * 7 2 1 9 9 N 1.36935 * 120.00224 * 159.75033 * 7 2 1 10 10 C 1.46927 * 120.62874 * 332.80269 * 9 7 2 11 11 C 1.53190 * 108.77495 * 233.58420 * 10 9 7 12 12 C 1.53047 * 109.31305 * 305.36631 * 11 10 9 13 13 C 1.53038 * 109.53629 * 61.36563 * 12 11 10 14 14 H 1.08996 * 109.49763 * 58.62055 * 13 12 11 15 15 C 1.52999 * 109.49537 * 178.68397 * 13 12 11 16 16 N 1.46502 * 109.46999 * 185.00124 * 15 13 12 17 17 C 1.34777 * 119.99877 * 180.02562 * 16 15 13 18 18 O 1.21546 * 120.00331 * 359.97438 * 17 16 15 19 19 C 1.47865 * 119.99719 * 180.02562 * 17 16 15 20 20 C 1.40630 * 120.26413 * 359.97438 * 19 17 16 21 21 N 1.30851 * 121.65962 * 179.74521 * 20 19 17 22 22 C 1.33588 * 121.58306 * 0.24871 * 21 20 19 23 23 C 1.40637 * 121.62637 * 180.02562 * 22 21 20 24 24 N 1.31159 * 120.04038 * 179.97438 * 23 22 21 25 25 C 1.32488 * 122.88758 * 0.02646 * 24 23 22 26 26 C 1.36314 * 121.71502 * 359.97438 * 25 24 23 27 27 C 1.40605 * 118.65129 * 0.02562 * 26 25 24 28 28 C 1.38998 * 120.25870 * 180.29810 * 19 17 16 29 29 C 1.46925 * 120.63186 * 152.77966 * 9 7 2 30 30 H 0.97000 * 120.00116 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.58507 * 113.79878 * 10 9 7 32 32 H 1.08999 * 109.59030 * 353.37272 * 10 9 7 33 33 H 1.08997 * 109.49930 * 185.41790 * 11 10 9 34 34 H 1.08993 * 109.52528 * 65.33651 * 11 10 9 35 35 H 1.08999 * 109.45960 * 301.34657 * 12 11 10 36 36 H 1.08995 * 109.44704 * 181.38144 * 12 11 10 37 37 H 1.09002 * 109.47502 * 65.00228 * 15 13 12 38 38 H 1.08998 * 109.47013 * 305.00048 * 15 13 12 39 39 H 0.96992 * 120.00194 * 359.97438 * 16 15 13 40 40 H 1.08003 * 119.16679 * 0.02562 * 20 19 17 41 41 H 1.07998 * 119.98191 * 359.97438 * 23 22 21 42 42 H 1.08006 * 119.14128 * 179.97438 * 25 24 23 43 43 H 1.07997 * 120.67625 * 180.02562 * 26 25 24 44 44 H 1.08000 * 121.10621 * 359.94591 * 28 19 17 45 45 H 1.09005 * 109.58504 * 6.62910 * 29 9 7 46 46 H 1.09004 * 109.58875 * 246.20574 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3942 2.1062 -1.3950 5 1 1.5031 2.6205 0.8009 6 1 3.5956 1.4126 0.5940 7 6 2.0103 -1.2021 0.0005 8 1 1.5204 -2.1084 0.3246 9 7 3.3162 -1.2390 -0.4099 10 6 3.8267 -0.2523 -1.3714 11 6 4.4783 -0.9957 -2.5417 12 6 5.5409 -1.9562 -2.0026 13 6 4.8805 -2.9864 -1.0835 14 1 4.1174 -3.5324 -1.6381 15 6 5.9383 -3.9659 -0.5711 16 7 5.2889 -5.0207 0.2112 17 6 6.0291 -6.0011 0.7657 18 8 7.2353 -6.0103 0.6165 19 6 5.3735 -7.0660 1.5547 20 6 3.9783 -7.0610 1.7305 21 7 3.3695 -7.9923 2.4191 22 6 4.0444 -8.9918 2.9936 23 6 3.3910 -9.9935 3.7335 24 7 4.0845 -10.9611 4.2841 25 6 5.4022 -11.0507 4.1805 26 6 6.1306 -10.1315 3.4857 27 6 5.4556 -9.0643 2.8673 28 6 6.1323 -8.0762 2.1342 29 6 4.2335 -2.2655 0.1033 30 1 -0.4850 0.8400 0.0004 31 1 4.5667 0.3831 -0.8848 32 1 3.0030 0.3590 -1.7401 33 1 4.9456 -0.2767 -3.2145 34 1 3.7189 -1.5600 -3.0829 35 1 6.2870 -1.3941 -1.4410 36 1 6.0229 -2.4685 -2.8351 37 1 6.6517 -3.4338 0.0582 38 1 6.4615 -4.4110 -1.4173 39 1 4.3264 -5.0132 0.3306 40 1 3.3941 -6.2710 1.2821 41 1 2.3175 -9.9661 3.8484 42 1 5.9127 -11.8735 4.6590 43 1 7.2043 -10.2211 3.4117 44 1 7.2059 -8.1033 2.0197 45 1 3.6780 -2.9827 0.7077 46 1 5.0066 -1.7943 0.7102 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282058322.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:10 Heat of formation + Delta-G solvation = 28.286575 kcal Electronic energy + Delta-G solvation = -28414.519094 eV Core-core repulsion = 24496.552010 eV Total energy + Delta-G solvation = -3917.967084 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.38864 -40.92664 -39.61080 -38.82546 -36.43946 -34.86498 -34.76034 -33.20481 -32.66540 -31.87680 -31.48175 -27.84637 -27.11574 -25.89155 -25.61178 -23.70587 -23.67902 -23.04522 -22.12307 -20.90926 -19.70401 -19.14218 -18.71172 -18.54094 -17.43853 -17.19905 -16.87299 -16.70003 -16.13597 -16.07492 -15.67240 -15.45395 -15.29055 -15.17111 -15.07870 -14.83183 -14.36298 -14.31229 -14.19092 -13.94513 -13.84618 -13.57568 -13.47873 -13.27101 -13.17030 -12.54446 -12.17440 -12.11128 -11.97046 -11.69562 -11.57051 -11.51021 -11.26581 -11.19668 -10.98203 -10.66293 -10.56848 -10.52362 -10.12461 -9.56901 -8.90750 -8.14812 -5.45764 -1.08746 -0.66561 0.61104 1.29962 1.38674 1.41747 1.49698 1.98461 2.15567 2.42600 2.92240 2.93204 3.07517 3.25414 3.33028 3.36741 3.46319 3.55696 3.57259 3.84512 3.88699 3.98138 4.03548 4.15822 4.26786 4.33551 4.41395 4.48430 4.55834 4.62631 4.66433 4.79494 4.80667 4.82325 4.86413 4.92739 5.00671 5.10873 5.13009 5.17814 5.27910 5.31680 5.37670 5.45539 5.59973 5.88598 6.14797 6.35853 6.50127 6.82736 6.93913 7.00854 7.64876 8.05479 9.04788 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016139 B = 0.002413 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.509880 B =11599.244291 C =12965.974923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.037 4.037 3 Si 0.943 3.057 4 H -0.278 1.278 5 H -0.316 1.316 6 H -0.261 1.261 7 C -0.242 4.242 8 H 0.059 0.941 9 N -0.620 5.620 10 C 0.115 3.885 11 C -0.127 4.127 12 C -0.098 4.098 13 C -0.106 4.106 14 H 0.076 0.924 15 C 0.136 3.864 16 N -0.711 5.711 17 C 0.567 3.433 18 O -0.566 6.566 19 C -0.182 4.182 20 C 0.160 3.840 21 N -0.474 5.474 22 C 0.064 3.936 23 C 0.151 3.849 24 N -0.482 5.482 25 C 0.066 3.934 26 C -0.123 4.123 27 C -0.100 4.100 28 C 0.015 3.985 29 C 0.150 3.850 30 H 0.260 0.740 31 H 0.030 0.970 32 H 0.044 0.956 33 H 0.080 0.920 34 H 0.055 0.945 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.410 0.590 40 H 0.182 0.818 41 H 0.184 0.816 42 H 0.192 0.808 43 H 0.178 0.822 44 H 0.172 0.828 45 H 0.059 0.941 46 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.365 -19.078 2.343 25.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.232 4.232 3 Si 0.773 3.227 4 H -0.205 1.205 5 H -0.245 1.245 6 H -0.185 1.185 7 C -0.372 4.372 8 H 0.077 0.923 9 N -0.344 5.344 10 C -0.010 4.010 11 C -0.166 4.166 12 C -0.136 4.136 13 C -0.126 4.126 14 H 0.094 0.906 15 C 0.013 3.987 16 N -0.362 5.362 17 C 0.354 3.646 18 O -0.447 6.447 19 C -0.188 4.188 20 C -0.015 4.015 21 N -0.182 5.182 22 C -0.059 4.059 23 C -0.021 4.021 24 N -0.191 5.191 25 C -0.076 4.076 26 C -0.144 4.144 27 C -0.107 4.107 28 C -0.012 4.012 29 C 0.025 3.975 30 H 0.069 0.931 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.104 0.896 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.248 0.752 40 H 0.198 0.802 41 H 0.201 0.799 42 H 0.209 0.791 43 H 0.196 0.804 44 H 0.190 0.810 45 H 0.078 0.922 46 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 15.863 -19.777 2.914 25.520 hybrid contribution 0.337 1.935 -0.393 2.003 sum 16.200 -17.841 2.521 24.231 Atomic orbital electron populations 1.69956 1.07323 1.27020 1.56088 1.25869 0.95779 1.00811 1.00697 0.85960 0.78853 0.80690 0.77173 1.20509 1.24518 1.18519 1.18902 0.86490 0.93553 1.38274 0.92316 1.44480 1.07594 1.34082 1.48256 1.21435 0.96515 0.92101 0.90916 1.21908 0.98431 0.99158 0.97152 1.21361 0.97029 0.96201 0.99010 1.21763 0.97221 0.95964 0.97671 0.90567 1.21396 0.94824 0.87213 0.95305 1.45975 1.11764 1.25891 1.52581 1.18022 0.86250 0.81438 0.78894 1.90765 1.14883 1.77016 1.61990 1.21039 0.95625 0.98588 1.03577 1.23448 0.90874 0.95422 0.91727 1.67914 1.39513 1.02235 1.08574 1.20333 0.91278 0.95831 0.98430 1.23365 1.01421 0.87062 0.90300 1.67514 1.10397 1.22742 1.18450 1.22890 0.88915 0.99349 0.96461 1.22357 1.03231 0.92634 0.96130 1.19169 0.94157 0.97640 0.99729 1.22125 1.01803 0.88882 0.88358 1.21141 0.91862 0.90429 0.94075 0.93125 0.95170 0.93804 0.90108 0.92640 0.91423 0.89621 0.91260 0.90159 0.75220 0.80163 0.79861 0.79122 0.80415 0.81024 0.92238 0.95323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.35 13.97 21.65 0.30 -59.05 16 2 C -0.04 -2.12 5.24 84.86 0.44 -1.68 16 3 Si 0.94 46.05 24.35 68.60 1.67 47.72 16 4 H -0.28 -12.90 6.70 99.48 0.67 -12.23 16 5 H -0.32 -15.88 7.11 99.48 0.71 -15.17 16 6 H -0.26 -12.13 6.45 99.48 0.64 -11.49 16 7 C -0.24 -13.13 10.04 84.03 0.84 -12.28 16 8 H 0.06 3.42 8.06 -2.91 -0.02 3.40 16 9 N -0.62 -27.16 2.77 -699.09 -1.94 -29.10 16 10 C 0.12 4.59 4.19 86.36 0.36 4.95 16 11 C -0.13 -3.81 6.08 30.67 0.19 -3.62 16 12 C -0.10 -2.34 5.17 30.62 0.16 -2.18 16 13 C -0.11 -2.69 2.37 -10.72 -0.03 -2.71 16 14 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 15 C 0.14 2.93 5.07 86.38 0.44 3.37 16 16 N -0.71 -14.83 5.28 -465.95 -2.46 -17.29 16 17 C 0.57 12.99 7.78 86.79 0.67 13.67 16 18 O -0.57 -16.05 16.39 -3.86 -0.06 -16.11 16 19 C -0.18 -3.67 5.89 -19.96 -0.12 -3.78 16 20 C 0.16 3.23 10.68 85.42 0.91 4.14 16 21 N -0.47 -10.79 10.33 -187.61 -1.94 -12.72 16 22 C 0.06 1.35 6.62 40.36 0.27 1.61 16 23 C 0.15 2.85 11.25 85.38 0.96 3.81 16 24 N -0.48 -8.69 10.28 -195.39 -2.01 -10.70 16 25 C 0.07 0.85 11.08 84.14 0.93 1.78 16 26 C -0.12 -1.48 9.88 22.40 0.22 -1.26 16 27 C -0.10 -1.77 5.75 -21.27 -0.12 -1.89 16 28 C 0.01 0.27 9.51 22.98 0.22 0.48 16 29 C 0.15 5.04 5.60 86.36 0.48 5.53 16 30 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 31 H 0.03 1.18 6.98 -2.39 -0.02 1.16 16 32 H 0.04 1.98 4.50 -2.39 -0.01 1.97 16 33 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.41 7.66 5.73 -92.71 -0.53 7.13 16 40 H 0.18 2.97 6.37 -2.91 -0.02 2.95 16 41 H 0.18 2.88 8.06 -2.91 -0.02 2.86 16 42 H 0.19 1.11 8.06 -2.91 -0.02 1.09 16 43 H 0.18 0.88 8.06 -2.91 -0.02 0.85 16 44 H 0.17 2.50 7.71 -2.91 -0.02 2.47 16 45 H 0.06 1.97 7.14 -2.38 -0.02 1.95 16 46 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -73.57 369.93 0.78 -72.79 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 0.38 Total: 14.54 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: 6.84 Total: 9.94 kcal Atomic # 7 Polarization: -120.83 SS G_CDS: -8.05 Total: -128.87 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -0.06 Total: -16.11 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 1.67 Total: 47.72 kcal Total: -73.57 0.78 -72.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282058322.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.078 kcal (2) G-P(sol) polarization free energy of solvation -73.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds