Wall clock time and date at job start Tue Mar 31 2020 22:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00306 * 2 1 4 4 H 1.48491 * 109.47098 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47156 * 299.99986 * 3 2 1 6 6 H 1.48498 * 109.46774 * 60.00025 * 3 2 1 7 7 C 1.37877 * 119.99675 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99918 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00048 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.47346 * 180.02562 * 9 7 2 11 11 C 1.46498 * 120.00174 * 89.68406 * 10 9 7 12 12 C 1.50700 * 109.47226 * 270.00527 * 11 10 9 13 13 C 1.38220 * 119.61978 * 95.00085 * 12 11 10 14 14 C 1.38623 * 119.16368 * 180.02562 * 13 12 11 15 15 C 1.38670 * 118.41970 * 0.02562 * 14 13 12 16 16 C 1.38183 * 119.16189 * 359.97438 * 15 14 13 17 17 N 1.31861 * 119.61619 * 275.29208 * 12 11 10 18 18 C 1.34778 * 119.99904 * 269.69010 * 10 9 7 19 19 O 1.21278 * 119.99995 * 173.37656 * 18 10 9 20 20 C 1.50705 * 119.99458 * 353.37776 * 18 10 9 21 21 H 1.08992 * 109.50008 * 45.75192 * 20 18 10 22 22 C 1.53123 * 109.49377 * 165.84684 * 20 18 10 23 23 C 1.53280 * 109.70492 * 189.85761 * 22 20 18 24 24 N 1.46468 * 108.69252 * 309.23002 * 23 22 20 25 25 C 1.34413 * 128.44203 * 197.36021 * 24 23 22 26 26 N 1.30789 * 108.55220 * 179.76970 * 25 24 23 27 27 C 1.34426 * 109.31860 * 0.06881 * 26 25 24 28 28 C 1.33854 * 107.80100 * 0.02562 * 27 26 25 29 29 C 1.50711 * 128.68051 * 179.90759 * 28 27 26 30 30 H 0.97006 * 119.99890 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.47747 * 59.99754 * 9 7 2 32 32 H 1.09001 * 109.47286 * 299.99676 * 9 7 2 33 33 H 1.09001 * 109.46864 * 149.99939 * 11 10 9 34 34 H 1.09004 * 109.46823 * 30.00454 * 11 10 9 35 35 H 1.08004 * 120.41984 * 0.04173 * 13 12 11 36 36 H 1.07998 * 120.79169 * 180.02562 * 14 13 12 37 37 H 1.08002 * 120.41796 * 180.02562 * 15 14 13 38 38 H 1.08002 * 119.61618 * 180.02562 * 16 15 14 39 39 H 1.08995 * 109.43088 * 309.93253 * 22 20 18 40 40 H 1.09001 * 109.42877 * 69.78487 * 22 20 18 41 41 H 1.08995 * 109.60371 * 189.46109 * 23 22 20 42 42 H 1.09005 * 109.72803 * 69.06670 * 23 22 20 43 43 H 1.07992 * 125.72404 * 359.76820 * 25 24 23 44 44 H 1.08007 * 126.09636 * 180.02562 * 27 26 25 45 45 H 1.09000 * 109.74992 * 76.05312 * 29 28 27 46 46 H 1.08999 * 109.78438 * 315.35357 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0017 10 7 2.2028 -3.6128 -0.0015 11 6 2.6831 -4.1656 1.2673 12 6 3.9278 -3.4319 1.6959 13 6 3.8262 -2.3695 2.5742 14 6 4.9771 -1.7010 2.9617 15 6 6.1926 -2.1277 2.4486 16 6 6.2162 -3.1978 1.5746 17 7 5.1005 -3.8073 1.2241 18 6 2.6368 -4.1286 -1.1686 19 8 3.5129 -4.9672 -1.1724 20 6 2.0332 -3.6632 -2.4687 21 1 1.9631 -2.5756 -2.4685 22 6 2.9160 -4.1189 -3.6339 23 6 2.4487 -3.4470 -4.9299 24 7 1.0044 -3.6474 -5.0682 25 6 0.2442 -3.5172 -6.1690 26 7 -0.9948 -3.7937 -5.8543 27 6 -1.0629 -4.1059 -4.5486 28 6 0.1730 -4.0186 -4.0420 29 6 0.6310 -4.2670 -2.6278 30 1 -0.4850 0.8401 0.0004 31 1 0.6245 -2.5564 -0.8919 32 1 0.6239 -2.5575 0.8880 33 1 2.9109 -5.2239 1.1395 34 1 1.9123 -4.0494 2.0292 35 1 2.8624 -2.0642 2.9540 36 1 4.9283 -0.8677 3.6470 37 1 7.1094 -1.6305 2.7291 38 1 7.1589 -3.5365 1.1708 39 1 3.9511 -3.8418 -3.4346 40 1 2.8453 -5.2014 -3.7407 41 1 2.9631 -3.8948 -5.7801 42 1 2.6676 -2.3799 -4.8908 43 1 0.5973 -3.2321 -7.1490 44 1 -1.9556 -4.3785 -4.0052 45 1 0.6682 -5.3393 -2.4356 46 1 -0.0564 -3.7913 -1.9284 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349434248.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:08 Heat of formation + Delta-G solvation = 63.233261 kcal Electronic energy + Delta-G solvation = -30254.488528 eV Core-core repulsion = 26338.036846 eV Total energy + Delta-G solvation = -3916.451682 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.09870 -39.97521 -39.09590 -36.03295 -35.15130 -33.05847 -32.70965 -32.00034 -31.20715 -30.24180 -28.08581 -27.55058 -26.01530 -24.39989 -23.20998 -22.96421 -22.47948 -21.44987 -21.16164 -19.03321 -18.26349 -17.06124 -16.82093 -16.48302 -16.34350 -15.75618 -15.66940 -15.28198 -15.04802 -14.52116 -14.45132 -13.91161 -13.79786 -13.60413 -13.47416 -13.24202 -12.97533 -12.89185 -12.78558 -12.49976 -12.28146 -11.86998 -11.70580 -11.53262 -11.39825 -11.34142 -11.05490 -10.88044 -10.77879 -10.64401 -10.24990 -9.82596 -9.77051 -9.45873 -9.29306 -9.06584 -8.99034 -8.68702 -8.51194 -8.07473 -7.81137 -6.25937 -4.32151 1.48321 1.72014 2.30467 2.98796 3.13033 3.22953 3.24812 3.31851 3.40097 3.73885 4.24524 4.35497 4.60867 4.71727 4.79201 4.85952 4.90098 5.07332 5.09499 5.14592 5.16818 5.24804 5.38925 5.41999 5.49626 5.56010 5.64295 5.69842 5.83927 5.90480 5.92709 5.95744 6.05750 6.12807 6.17441 6.19188 6.43810 6.51417 6.57973 6.60144 6.66194 6.97697 7.08563 7.11314 7.43179 7.44014 7.69267 7.97885 8.22869 8.28430 8.48151 8.72501 8.94947 9.35772 10.80516 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010738 B = 0.004419 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2606.970179 B = 6334.956629 C = 7772.628543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.068 3.932 3 Si 0.887 3.113 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.532 4.532 8 H 0.058 0.942 9 C 0.231 3.769 10 N -0.591 5.591 11 C 0.172 3.828 12 C 0.124 3.876 13 C -0.133 4.133 14 C -0.085 4.085 15 C -0.182 4.182 16 C 0.086 3.914 17 N -0.458 5.458 18 C 0.525 3.475 19 O -0.548 6.548 20 C -0.108 4.108 21 H 0.112 0.888 22 C -0.110 4.110 23 C 0.104 3.896 24 N -0.454 5.454 25 C 0.174 3.826 26 N -0.499 5.499 27 C -0.029 4.029 28 C -0.005 4.005 29 C -0.036 4.036 30 H 0.265 0.735 31 H 0.047 0.953 32 H 0.036 0.964 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.136 0.864 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.146 0.854 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.201 0.799 44 H 0.168 0.832 45 H 0.080 0.920 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.735 -5.354 -1.205 7.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.135 4.135 3 Si 0.715 3.285 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.570 4.570 8 H 0.077 0.923 9 C 0.112 3.888 10 N -0.322 5.322 11 C 0.048 3.952 12 C -0.015 4.015 13 C -0.153 4.153 14 C -0.111 4.111 15 C -0.202 4.202 16 C -0.072 4.072 17 N -0.168 5.168 18 C 0.312 3.688 19 O -0.426 6.426 20 C -0.130 4.130 21 H 0.130 0.870 22 C -0.148 4.148 23 C -0.018 4.018 24 N -0.138 5.138 25 C -0.108 4.108 26 N -0.218 5.218 27 C -0.176 4.176 28 C -0.120 4.120 29 C -0.074 4.074 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.154 0.846 36 H 0.145 0.855 37 H 0.143 0.857 38 H 0.163 0.837 39 H 0.109 0.891 40 H 0.096 0.904 41 H 0.109 0.891 42 H 0.105 0.895 43 H 0.217 0.783 44 H 0.185 0.815 45 H 0.099 0.901 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.529 -6.330 -2.345 8.725 hybrid contribution 1.205 2.304 1.115 2.829 sum 6.733 -4.025 -1.230 7.941 Atomic orbital electron populations 1.69911 1.05821 1.27180 1.49590 1.24879 0.94747 0.98987 0.94891 0.86597 0.80221 0.83806 0.77887 1.19807 1.20862 1.20775 1.21456 0.93428 0.90297 1.51851 0.92331 1.19631 0.87497 0.82664 0.99035 1.48161 1.45196 1.35251 1.03606 1.20111 0.91077 0.97270 0.86775 1.21635 0.93677 0.94004 0.92178 1.21995 0.99473 0.95628 0.98207 1.21497 0.92575 0.98531 0.98494 1.22034 0.98589 0.99243 1.00310 1.22637 0.96686 0.92991 0.94839 1.67576 0.98125 1.29522 1.21534 1.20166 0.82108 0.81342 0.85177 1.90657 1.30535 1.34071 1.87331 1.21352 0.94997 1.03853 0.92793 0.86951 1.21645 1.00511 1.01243 0.91421 1.22053 0.77362 1.02372 1.00033 1.45432 1.08600 1.50688 1.09062 1.24663 0.86774 1.06475 0.92875 1.70445 1.18354 1.18558 1.14431 1.21770 0.96224 1.08261 0.91341 1.21113 0.91280 1.08154 0.91451 1.20235 0.95446 1.01389 0.90339 0.92545 0.93552 0.94612 0.89512 0.89424 0.84589 0.85466 0.85694 0.83659 0.89082 0.90449 0.89107 0.89509 0.78288 0.81481 0.90133 0.87984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.21 13.29 55.43 0.74 -22.48 16 2 C 0.07 1.71 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 20.02 29.54 -169.99 -5.02 14.99 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.53 -12.82 9.03 -34.44 -0.31 -13.13 16 8 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 9 C 0.23 4.96 4.83 -5.19 -0.03 4.93 16 10 N -0.59 -11.42 2.44 -176.43 -0.43 -11.85 16 11 C 0.17 3.03 5.71 -5.19 -0.03 3.00 16 12 C 0.12 2.27 6.36 -82.59 -0.53 1.74 16 13 C -0.13 -2.24 9.54 -39.45 -0.38 -2.62 16 14 C -0.08 -1.28 10.18 -39.28 -0.40 -1.68 16 15 C -0.18 -2.58 10.11 -39.44 -0.40 -2.98 16 16 C 0.09 1.36 11.18 -17.55 -0.20 1.17 16 17 N -0.46 -8.64 10.27 -9.48 -0.10 -8.73 16 18 C 0.52 10.09 6.83 -10.98 -0.08 10.01 16 19 O -0.55 -11.58 15.70 5.56 0.09 -11.50 16 20 C -0.11 -1.83 1.68 -91.45 -0.15 -1.98 16 21 H 0.11 2.16 7.08 -51.93 -0.37 1.79 16 22 C -0.11 -1.57 4.57 -26.52 -0.12 -1.69 16 23 C 0.10 1.24 7.00 -3.91 -0.03 1.22 16 24 N -0.45 -6.51 3.13 -114.09 -0.36 -6.86 16 25 C 0.17 2.44 12.66 -90.70 -1.15 1.29 16 26 N -0.50 -8.33 11.27 -14.87 -0.17 -8.50 16 27 C -0.03 -0.47 11.84 -17.96 -0.21 -0.68 16 28 C -0.01 -0.08 6.57 -81.73 -0.54 -0.62 16 29 C -0.04 -0.56 5.35 -27.62 -0.15 -0.70 16 30 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 31 H 0.05 1.02 4.52 -51.93 -0.23 0.79 16 32 H 0.04 0.80 7.90 -51.93 -0.41 0.39 16 33 H 0.09 1.53 7.52 -51.93 -0.39 1.14 16 34 H 0.09 1.34 7.80 -51.93 -0.40 0.94 16 35 H 0.14 2.22 8.06 -52.48 -0.42 1.79 16 36 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 37 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 38 H 0.15 1.90 8.06 -52.49 -0.42 1.47 16 39 H 0.09 1.33 8.00 -51.93 -0.42 0.91 16 40 H 0.08 1.12 8.11 -51.93 -0.42 0.70 16 41 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.20 1.97 8.06 -52.49 -0.42 1.54 16 44 H 0.17 2.37 8.06 -52.48 -0.42 1.95 16 45 H 0.08 1.19 8.11 -51.93 -0.42 0.77 16 46 H 0.10 1.67 6.24 -51.93 -0.32 1.34 16 LS Contribution 381.91 15.07 5.76 5.76 Total: -1.00 -31.37 381.91 -10.60 -41.97 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -6.32 Total: 8.31 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -4.78 Total: -1.11 kcal Atomic # 7 Polarization: -58.10 SS G_CDS: -0.32 Total: -58.42 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.09 Total: -11.50 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.37 -10.60 -41.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349434248.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.201 kcal (2) G-P(sol) polarization free energy of solvation -31.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds