Wall clock time and date at job start Tue Mar 31 2020 22:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99949 * 2 1 4 4 H 1.48499 * 109.47259 * 269.99852 * 3 2 1 5 5 H 1.48491 * 109.47221 * 30.00695 * 3 2 1 6 6 H 1.48507 * 109.46517 * 150.00476 * 3 2 1 7 7 C 1.37876 * 119.99851 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00365 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99815 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.46872 * 180.02562 * 9 7 2 11 11 C 1.46504 * 120.00055 * 87.41459 * 10 9 7 12 12 C 1.50703 * 109.46723 * 90.00261 * 11 10 9 13 13 C 1.38221 * 119.62027 * 95.00124 * 12 11 10 14 14 C 1.38635 * 119.16012 * 180.02562 * 13 12 11 15 15 C 1.38672 * 118.42152 * 0.02562 * 14 13 12 16 16 C 1.38190 * 119.16100 * 359.97438 * 15 14 13 17 17 N 1.31853 * 119.61525 * 275.01377 * 12 11 10 18 18 C 1.34779 * 120.00276 * 267.41376 * 10 9 7 19 19 O 1.21277 * 120.00469 * 185.22624 * 18 10 9 20 20 C 1.50709 * 119.99667 * 5.22978 * 18 10 9 21 21 H 1.09005 * 109.49601 * 330.64713 * 20 18 10 22 22 C 1.53115 * 109.49699 * 210.54969 * 20 18 10 23 23 C 1.53274 * 109.71366 * 170.15040 * 22 20 18 24 24 N 1.46474 * 108.69646 * 50.74823 * 23 22 20 25 25 C 1.34410 * 128.43884 * 162.64240 * 24 23 22 26 26 N 1.30782 * 108.54802 * 180.20623 * 25 24 23 27 27 C 1.34430 * 109.32688 * 359.94273 * 26 25 24 28 28 C 1.33864 * 107.79455 * 359.97438 * 27 26 25 29 29 C 1.50706 * 128.68315 * 180.08412 * 28 27 26 30 30 H 0.97007 * 120.00103 * 359.97438 * 1 2 3 31 31 H 1.08995 * 109.47163 * 60.00431 * 9 7 2 32 32 H 1.08999 * 109.47304 * 300.00257 * 9 7 2 33 33 H 1.08995 * 109.47210 * 330.00068 * 11 10 9 34 34 H 1.09004 * 109.46663 * 209.99729 * 11 10 9 35 35 H 1.08002 * 120.42334 * 0.04240 * 13 12 11 36 36 H 1.07995 * 120.78978 * 180.02562 * 14 13 12 37 37 H 1.07998 * 120.41814 * 180.02562 * 15 14 13 38 38 H 1.07996 * 119.61117 * 179.71719 * 16 15 14 39 39 H 1.09007 * 109.42771 * 290.21309 * 22 20 18 40 40 H 1.09000 * 109.43246 * 50.06563 * 22 20 18 41 41 H 1.08994 * 109.57908 * 290.99599 * 23 22 20 42 42 H 1.09000 * 109.74427 * 170.60343 * 23 22 20 43 43 H 1.08000 * 125.72744 * 0.18827 * 25 24 23 44 44 H 1.07992 * 126.10388 * 180.02562 * 27 26 25 45 45 H 1.09000 * 109.74207 * 44.62343 * 29 28 27 46 46 H 1.08999 * 109.78582 * 283.93297 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6127 -0.0005 11 6 2.7224 -4.1323 1.2669 12 6 1.8216 -5.2328 1.7655 13 6 2.1280 -6.5495 1.4775 14 6 1.2924 -7.5543 1.9404 15 6 0.1747 -7.1954 2.6786 16 6 -0.0671 -5.8577 2.9270 17 7 0.7502 -4.9285 2.4712 18 6 2.6008 -4.1591 -1.1665 19 8 3.3137 -5.1403 -1.1644 20 6 2.1598 -3.5509 -2.4730 21 1 1.1893 -3.0722 -2.3422 22 6 2.0504 -4.6474 -3.5361 23 6 1.3723 -4.0856 -4.7906 24 7 2.0514 -2.8464 -5.1764 25 6 2.0093 -2.2028 -6.3556 26 7 2.7645 -1.1381 -6.2755 27 6 3.3081 -1.0694 -5.0479 28 6 2.8738 -2.1250 -4.3486 29 6 3.1890 -2.5060 -2.9250 30 1 -0.4851 0.8401 0.0004 31 1 0.6240 -2.5567 -0.8903 32 1 0.6245 -2.5571 0.8896 33 1 2.7558 -3.3287 2.0026 34 1 3.7270 -4.5265 1.1134 35 1 3.0072 -6.7926 0.8993 36 1 1.5069 -8.5918 1.7311 37 1 -0.4977 -7.9519 3.0554 38 1 -0.9379 -5.5698 3.4972 39 1 3.0479 -5.0047 -3.7924 40 1 1.4593 -5.4750 -3.1440 41 1 0.3241 -3.8767 -4.5767 42 1 1.4426 -4.8092 -5.6026 43 1 1.4466 -2.5130 -7.2236 44 1 3.9752 -0.2995 -4.6896 45 1 3.1259 -1.6255 -2.2856 46 1 4.1916 -2.9299 -2.8698 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349434249.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:11 Heat of formation + Delta-G solvation = 62.333418 kcal Electronic energy + Delta-G solvation = -30046.300975 eV Core-core repulsion = 26129.810273 eV Total energy + Delta-G solvation = -3916.490703 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.04722 -40.15755 -39.22585 -36.05866 -35.18513 -33.07274 -32.59679 -32.22987 -31.39644 -30.23787 -28.06500 -27.47619 -26.17510 -24.28729 -23.40406 -23.00237 -22.60502 -21.53431 -21.12404 -19.07128 -18.23609 -16.98965 -16.87148 -16.69145 -16.35488 -15.82605 -15.69547 -15.36238 -15.21270 -14.59229 -14.40929 -13.88662 -13.76535 -13.57798 -13.57474 -13.31219 -13.06219 -12.93965 -12.82047 -12.55918 -12.34168 -11.78331 -11.73593 -11.68593 -11.49856 -11.39148 -10.98805 -10.91281 -10.72136 -10.47731 -10.15510 -9.82797 -9.72055 -9.70058 -9.28239 -9.25720 -9.16039 -8.78839 -8.52110 -8.00233 -7.87055 -6.18365 -4.25644 1.24704 1.46075 2.36169 3.01113 3.15279 3.25549 3.33332 3.34806 3.46110 3.63556 4.15974 4.32927 4.54245 4.59892 4.77900 4.88115 4.91802 4.92835 4.98775 5.12516 5.16040 5.20585 5.27578 5.32935 5.37639 5.51173 5.64399 5.70486 5.73242 5.82944 5.88210 5.96477 5.96931 6.14167 6.16986 6.30652 6.33863 6.34863 6.44502 6.70019 6.72258 6.86992 7.05593 7.18154 7.44708 7.48175 7.74704 8.02598 8.18609 8.28441 8.33865 8.72093 8.86722 9.41814 10.88565 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009130 B = 0.004630 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3065.910982 B = 6045.496737 C = 8295.783318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.070 3.930 3 Si 0.891 3.109 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.538 4.538 8 H 0.063 0.937 9 C 0.236 3.764 10 N -0.582 5.582 11 C 0.168 3.832 12 C 0.120 3.880 13 C -0.151 4.151 14 C -0.084 4.084 15 C -0.181 4.181 16 C 0.094 3.906 17 N -0.464 5.464 18 C 0.524 3.476 19 O -0.571 6.571 20 C -0.105 4.105 21 H 0.106 0.894 22 C -0.114 4.114 23 C 0.106 3.894 24 N -0.457 5.457 25 C 0.171 3.829 26 N -0.499 5.499 27 C -0.031 4.031 28 C 0.001 3.999 29 C -0.035 4.035 30 H 0.265 0.735 31 H 0.035 0.965 32 H 0.047 0.953 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.138 0.862 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.152 0.848 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.200 0.800 44 H 0.167 0.833 45 H 0.117 0.883 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.614 -12.803 -2.216 13.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.134 4.134 3 Si 0.718 3.282 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.577 4.577 8 H 0.081 0.919 9 C 0.117 3.883 10 N -0.311 5.311 11 C 0.043 3.957 12 C -0.019 4.019 13 C -0.171 4.171 14 C -0.110 4.110 15 C -0.202 4.202 16 C -0.063 4.063 17 N -0.173 5.173 18 C 0.312 3.688 19 O -0.453 6.453 20 C -0.127 4.127 21 H 0.124 0.876 22 C -0.152 4.152 23 C -0.016 4.016 24 N -0.141 5.141 25 C -0.110 4.110 26 N -0.217 5.217 27 C -0.177 4.177 28 C -0.114 4.114 29 C -0.074 4.074 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.117 0.883 34 H 0.106 0.894 35 H 0.156 0.844 36 H 0.147 0.853 37 H 0.147 0.853 38 H 0.169 0.831 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.109 0.891 43 H 0.217 0.783 44 H 0.185 0.815 45 H 0.135 0.865 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.670 -11.832 -2.637 12.141 hybrid contribution 0.053 -0.514 0.482 0.707 sum 0.722 -12.346 -2.155 12.554 Atomic orbital electron populations 1.69919 1.06054 1.27305 1.49220 1.24899 0.94776 0.99173 0.94566 0.86597 0.79908 0.83168 0.78517 1.20181 1.21147 1.19700 1.21399 0.93469 0.90239 1.52552 0.91909 1.19569 0.87453 0.82282 0.98983 1.48222 1.45028 1.34376 1.03445 1.20163 0.94417 0.94124 0.86952 1.21866 0.93117 0.93947 0.92971 1.22130 1.01356 0.93420 1.00227 1.21547 0.94058 0.99676 0.95764 1.22095 0.98891 0.97966 1.01208 1.22769 0.97801 0.88935 0.96801 1.67599 1.03138 1.37832 1.08729 1.20274 0.79955 0.83052 0.85541 1.90573 1.39700 1.27028 1.87966 1.21338 1.02584 0.96363 0.92367 0.87578 1.21700 1.02433 0.98008 0.93084 1.21989 0.97095 0.84081 0.98473 1.45404 1.36383 1.20588 1.11731 1.24636 1.03830 0.92432 0.90143 1.70432 1.12075 1.18442 1.20770 1.21768 1.05580 0.99618 0.90745 1.21195 0.99457 0.95968 0.94759 1.20217 0.97716 1.00195 0.89226 0.92531 0.94710 0.93509 0.88336 0.89398 0.84395 0.85325 0.85315 0.83054 0.90138 0.89695 0.89692 0.89131 0.78343 0.81532 0.86529 0.90320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.09 13.29 55.43 0.74 -23.36 16 2 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.89 20.20 29.54 -169.99 -5.02 15.18 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.54 -13.14 8.05 -34.44 -0.28 -13.42 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.24 5.37 4.97 -5.19 -0.03 5.34 16 10 N -0.58 -11.39 2.44 -176.43 -0.43 -11.82 16 11 C 0.17 3.00 5.69 -5.19 -0.03 2.97 16 12 C 0.12 2.03 6.36 -82.59 -0.53 1.51 16 13 C -0.15 -2.23 9.72 -39.44 -0.38 -2.61 16 14 C -0.08 -1.04 10.18 -39.27 -0.40 -1.44 16 15 C -0.18 -2.14 10.11 -39.44 -0.40 -2.54 16 16 C 0.09 1.32 11.18 -17.55 -0.20 1.13 16 17 N -0.46 -8.10 10.27 -9.47 -0.10 -8.20 16 18 C 0.52 9.76 6.67 -10.98 -0.07 9.68 16 19 O -0.57 -11.10 15.75 5.56 0.09 -11.01 16 20 C -0.11 -1.77 2.04 -91.46 -0.19 -1.95 16 21 H 0.11 1.98 5.72 -51.93 -0.30 1.68 16 22 C -0.11 -1.54 4.68 -26.53 -0.12 -1.67 16 23 C 0.11 1.23 7.00 -3.91 -0.03 1.20 16 24 N -0.46 -6.69 3.13 -114.09 -0.36 -7.05 16 25 C 0.17 2.47 12.66 -90.71 -1.15 1.33 16 26 N -0.50 -8.70 11.27 -14.87 -0.17 -8.87 16 27 C -0.03 -0.53 11.84 -17.95 -0.21 -0.75 16 28 C 0.00 0.01 6.57 -81.73 -0.54 -0.53 16 29 C -0.04 -0.60 5.61 -27.64 -0.15 -0.75 16 30 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 31 H 0.04 0.83 5.77 -51.93 -0.30 0.53 16 32 H 0.05 1.18 8.09 -51.93 -0.42 0.76 16 33 H 0.10 1.82 8.07 -51.93 -0.42 1.40 16 34 H 0.09 1.47 7.40 -51.93 -0.38 1.08 16 35 H 0.14 2.00 7.81 -52.49 -0.41 1.59 16 36 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 37 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 38 H 0.15 1.73 8.06 -52.49 -0.42 1.30 16 39 H 0.08 1.13 8.10 -51.92 -0.42 0.71 16 40 H 0.08 1.09 8.11 -51.93 -0.42 0.67 16 41 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.20 2.00 8.06 -52.49 -0.42 1.58 16 44 H 0.17 2.66 8.06 -52.49 -0.42 2.24 16 45 H 0.12 2.24 6.65 -51.93 -0.35 1.89 16 46 H 0.08 1.29 8.11 -51.93 -0.42 0.87 16 LS Contribution 382.26 15.07 5.76 5.76 Total: -1.00 -30.90 382.26 -10.63 -41.53 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -6.34 Total: 8.66 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: -4.80 Total: -0.82 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: -0.32 Total: -59.30 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.09 Total: -11.01 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.90 -10.63 -41.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349434249.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.860 kcal (2) G-P(sol) polarization free energy of solvation -30.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds