Wall clock time and date at job start Tue Mar 31 2020 23:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38268 * 120.08611 * 2 1 4 4 C 1.37964 * 119.71403 * 180.23787 * 3 2 1 5 5 C 1.38841 * 120.50337 * 359.94943 * 4 3 2 6 6 C 1.37671 * 119.85124 * 359.62840 * 5 4 3 7 7 C 1.37907 * 120.08699 * 180.02562 * 2 1 3 8 8 C 1.50592 * 122.85696 * 180.91026 * 6 5 4 9 9 C 1.52782 * 110.86759 * 339.79406 * 8 6 5 10 10 N 1.47223 * 107.92573 * 47.44707 * 9 8 6 11 11 C 1.34779 * 121.34044 * 115.77794 * 10 9 8 12 12 O 1.21591 * 119.99184 * 354.79177 * 11 10 9 13 13 N 1.34772 * 120.00370 * 174.79013 * 11 10 9 14 14 C 1.40196 * 120.00218 * 185.11951 * 13 11 10 15 15 C 1.40400 * 125.96804 * 0.02562 * 14 13 11 16 16 C 1.35249 * 107.86352 * 179.97438 * 15 14 13 17 17 N 1.34960 * 107.86113 * 0.02562 * 16 15 14 18 18 C 1.46496 * 125.98000 * 180.02562 * 17 16 15 19 19 C 1.50703 * 109.47007 * 124.99789 * 18 17 16 20 20 H 1.07999 * 119.99789 * 0.02562 * 19 18 17 21 21 C 1.37881 * 119.99998 * 180.02562 * 19 18 17 22 22 N 1.31509 * 120.00192 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00026 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46928 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.47089 * 119.99999 * 23 21 19 26 26 H 1.48503 * 109.46929 * 240.00119 * 23 21 19 27 27 N 1.31203 * 125.97279 * 179.69130 * 14 13 11 28 28 C 1.46691 * 117.32613 * 295.80463 * 10 9 8 29 29 H 1.09000 * 109.46720 * 90.00421 * 1 2 3 30 30 H 1.09001 * 109.47270 * 210.00707 * 1 2 3 31 31 H 1.09006 * 109.46590 * 330.00350 * 1 2 3 32 32 H 1.07998 * 120.14310 * 0.50544 * 3 2 1 33 33 H 1.07994 * 119.74581 * 179.97438 * 4 3 2 34 34 H 1.08001 * 119.70478 * 359.97438 * 7 2 1 35 35 H 1.09007 * 109.20289 * 100.15033 * 8 6 5 36 36 H 1.08998 * 109.19887 * 219.43533 * 8 6 5 37 37 H 1.08999 * 109.77376 * 167.05276 * 9 8 6 38 38 H 1.09002 * 109.77005 * 287.84154 * 9 8 6 39 39 H 0.97007 * 120.00032 * 5.11740 * 13 11 10 40 40 H 1.07997 * 126.07111 * 0.02562 * 15 14 13 41 41 H 1.08000 * 126.06927 * 179.97438 * 16 15 14 42 42 H 1.09000 * 109.47577 * 245.00097 * 18 17 16 43 43 H 1.09002 * 109.47281 * 5.00664 * 18 17 16 44 44 H 0.96998 * 120.00233 * 179.97438 * 22 21 19 45 45 H 1.08998 * 109.43602 * 284.38575 * 28 10 9 46 46 H 1.09004 * 109.43575 * 164.51017 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2002 1.1964 0.0000 4 6 3.5798 1.1874 -0.0050 5 6 4.2767 -0.0134 -0.0089 6 6 3.5880 -1.2054 -0.0001 7 6 2.1984 -1.1933 -0.0005 8 6 4.2747 -2.5456 0.0164 9 6 5.7174 -2.4239 -0.4714 10 7 6.3369 -1.2847 0.2257 11 6 7.3708 -1.4591 1.0725 12 8 7.7490 -2.5816 1.3469 13 7 7.9853 -0.3893 1.6151 14 6 9.1266 -0.5650 2.4101 15 6 9.7341 -1.7920 2.7210 16 6 10.8046 -1.5375 3.5074 17 7 10.8757 -0.2023 3.6904 18 6 11.8870 0.5058 4.4791 19 6 12.5502 1.5528 3.6218 20 1 12.2482 1.6785 2.5925 21 6 13.5425 2.3502 4.1514 22 7 13.9106 2.1968 5.4046 23 14 14.3641 3.6485 3.0889 24 1 13.7733 3.6198 1.7268 25 1 14.1514 4.9888 3.6920 26 1 15.8202 3.3695 3.0036 27 7 9.8173 0.3888 2.9885 28 6 5.7833 0.0479 -0.0380 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8901 0.5138 32 1 1.6639 2.1338 0.0082 33 1 4.1216 2.1216 -0.0054 34 1 1.6550 -2.1266 -0.0005 35 1 4.2721 -2.9372 1.0337 36 1 3.7336 -3.2336 -0.6331 37 1 6.2633 -3.3386 -0.2401 38 1 5.7294 -2.2486 -1.5471 39 1 7.6379 0.5022 1.4556 40 1 9.4055 -2.7662 2.3902 41 1 11.4818 -2.2724 3.9170 42 1 11.4109 0.9849 5.3346 43 1 12.6361 -0.2038 4.8305 44 1 14.6090 2.7575 5.7771 45 1 6.1135 0.3903 -1.0187 46 1 6.1328 0.7434 0.7251 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361785508.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:57 Heat of formation + Delta-G solvation = 84.441838 kcal Electronic energy + Delta-G solvation = -28174.805700 eV Core-core repulsion = 24259.273691 eV Total energy + Delta-G solvation = -3915.532009 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.05019 -40.30923 -39.30894 -36.58263 -34.85981 -33.54792 -33.09635 -32.89106 -30.87322 -29.73293 -29.23700 -28.35960 -26.60230 -24.82235 -24.26686 -23.02409 -22.53887 -21.48394 -20.49525 -19.89062 -18.95764 -17.93689 -16.97501 -16.56223 -16.45629 -15.92845 -15.54405 -15.43720 -15.10546 -14.89328 -14.70151 -14.22981 -14.20954 -13.97634 -13.65306 -13.53858 -13.30206 -12.92271 -12.83583 -12.67933 -12.40092 -12.29056 -12.23264 -12.10469 -11.73874 -11.59014 -11.36603 -11.04596 -10.98921 -10.86927 -10.41743 -10.25064 -10.07312 -9.66523 -9.46302 -9.11036 -8.89668 -8.71277 -8.62415 -8.07903 -7.39084 -6.23066 -4.27847 0.98403 1.06472 2.28917 2.66569 3.09808 3.22862 3.30326 3.32985 3.36544 3.43353 3.83762 4.10251 4.28125 4.33001 4.34352 4.55191 4.56273 4.76754 4.81081 4.95683 5.03035 5.09005 5.12125 5.18102 5.21834 5.23007 5.37557 5.43875 5.48970 5.61511 5.64910 5.73988 5.82651 5.85796 6.03054 6.13901 6.24823 6.29331 6.33536 6.56217 6.63032 6.69962 6.84375 6.99207 7.10813 7.50520 7.70791 7.80270 7.95158 8.08810 8.55498 8.68256 8.82861 9.37660 10.85661 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017160 B = 0.002164 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.322145 B =12938.220625 C =13920.235952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.085 4.085 3 C -0.122 4.122 4 C -0.108 4.108 5 C -0.101 4.101 6 C -0.061 4.061 7 C -0.122 4.122 8 C -0.099 4.099 9 C 0.132 3.868 10 N -0.629 5.629 11 C 0.722 3.278 12 O -0.563 6.563 13 N -0.643 5.643 14 C 0.275 3.725 15 C -0.286 4.286 16 C 0.051 3.949 17 N -0.320 5.320 18 C 0.258 3.742 19 C -0.527 4.527 20 H 0.069 0.931 21 C 0.061 3.939 22 N -0.895 5.895 23 Si 0.907 3.093 24 H -0.271 1.271 25 H -0.281 1.281 26 H -0.282 1.282 27 N -0.308 5.308 28 C 0.151 3.849 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.123 0.877 33 H 0.126 0.874 34 H 0.121 0.879 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.103 0.897 38 H 0.073 0.927 39 H 0.405 0.595 40 H 0.160 0.840 41 H 0.168 0.832 42 H 0.045 0.955 43 H 0.057 0.943 44 H 0.266 0.734 45 H 0.084 0.916 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.940 -6.504 -12.886 28.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.085 4.085 3 C -0.140 4.140 4 C -0.126 4.126 5 C -0.102 4.102 6 C -0.061 4.061 7 C -0.140 4.140 8 C -0.137 4.137 9 C 0.010 3.990 10 N -0.367 5.367 11 C 0.423 3.577 12 O -0.439 6.439 13 N -0.295 5.295 14 C 0.021 3.979 15 C -0.317 4.317 16 C -0.099 4.099 17 N -0.102 5.102 18 C 0.141 3.859 19 C -0.565 4.565 20 H 0.088 0.912 21 C -0.142 4.142 22 N -0.534 5.534 23 Si 0.735 3.265 24 H -0.196 1.196 25 H -0.207 1.207 26 H -0.208 1.208 27 N -0.139 5.139 28 C 0.028 3.972 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.141 0.859 33 H 0.144 0.856 34 H 0.139 0.861 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.121 0.879 38 H 0.091 0.909 39 H 0.242 0.758 40 H 0.178 0.822 41 H 0.185 0.815 42 H 0.062 0.938 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.102 0.898 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -24.303 -5.952 -12.275 27.871 hybrid contribution 0.196 0.569 -0.600 0.850 sum -24.108 -5.383 -12.875 27.855 Atomic orbital electron populations 1.20792 0.91182 1.02825 1.02301 1.19863 0.96079 0.93222 0.99382 1.20945 0.94005 0.97621 1.01443 1.21040 0.94375 0.97279 0.99903 1.19718 0.94948 0.93120 1.02384 1.19473 0.93314 0.94410 0.98884 1.21042 0.93326 0.97703 1.01888 1.20883 0.95623 0.94015 1.03180 1.21468 0.91972 0.90028 0.95581 1.47117 1.34226 1.08153 1.47167 1.15405 0.79421 0.84193 0.78663 1.90858 1.66664 1.22443 1.63894 1.41544 1.27437 1.09242 1.51257 1.18786 0.89279 0.93298 0.96511 1.21490 1.00591 0.98894 1.10765 1.22547 0.99593 0.87110 1.00605 1.49049 1.20836 1.03944 1.36386 1.19739 0.83193 0.92875 0.90138 1.21304 1.19189 1.17515 0.98491 0.91245 1.24953 0.96487 0.97469 0.95267 1.69925 1.30401 1.39985 1.13064 0.86278 0.78918 0.80882 0.80449 1.19579 1.20720 1.20781 1.77317 1.01717 1.19575 1.15259 1.20442 0.89780 0.84764 1.02261 0.91169 0.91563 0.91510 0.85924 0.85638 0.86100 0.89830 0.89534 0.87919 0.90850 0.75831 0.82246 0.81519 0.93755 0.92530 0.92405 0.89787 0.89341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.62 10.02 36.01 0.36 -0.26 16 2 C -0.09 -0.66 5.87 -104.73 -0.61 -1.28 16 3 C -0.12 -0.96 9.71 -39.67 -0.39 -1.34 16 4 C -0.11 -0.88 9.62 -39.46 -0.38 -1.26 16 5 C -0.10 -0.92 5.82 -104.55 -0.61 -1.53 16 6 C -0.06 -0.55 5.76 -104.61 -0.60 -1.15 16 7 C -0.12 -0.99 9.25 -39.43 -0.36 -1.35 16 8 C -0.10 -0.80 5.87 -28.05 -0.16 -0.97 16 9 C 0.13 1.23 6.43 -3.76 -0.02 1.21 16 10 N -0.63 -7.22 2.94 -180.13 -0.53 -7.75 16 11 C 0.72 11.23 8.29 -86.92 -0.72 10.51 16 12 O -0.56 -10.34 13.00 5.29 0.07 -10.27 16 13 N -0.64 -10.56 5.35 -15.51 -0.08 -10.64 16 14 C 0.28 5.68 8.11 -154.37 -1.25 4.43 16 15 C -0.29 -5.82 9.61 -39.83 -0.38 -6.21 16 16 C 0.05 1.05 11.44 -17.24 -0.20 0.85 16 17 N -0.32 -7.55 3.67 -62.56 -0.23 -7.78 16 18 C 0.26 6.61 6.26 -5.19 -0.03 6.58 16 19 C -0.53 -14.72 9.23 -34.44 -0.32 -15.04 16 20 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 21 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 22 N -0.90 -25.43 13.29 55.43 0.74 -24.69 16 23 Si 0.91 21.42 29.54 -169.99 -5.02 16.40 16 24 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 N -0.31 -7.19 12.41 31.44 0.39 -6.80 16 28 C 0.15 1.37 6.07 -5.04 -0.03 1.34 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 31 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 32 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 33 H 0.13 0.81 8.05 -52.49 -0.42 0.39 16 34 H 0.12 0.78 8.05 -52.49 -0.42 0.35 16 35 H 0.08 0.77 8.14 -51.92 -0.42 0.34 16 36 H 0.09 0.50 8.10 -51.93 -0.42 0.08 16 37 H 0.10 1.06 7.09 -51.93 -0.37 0.69 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.40 5.55 6.48 -40.82 -0.26 5.29 16 40 H 0.16 3.18 5.93 -52.49 -0.31 2.87 16 41 H 0.17 2.77 8.06 -52.49 -0.42 2.34 16 42 H 0.04 1.20 8.14 -51.93 -0.42 0.77 16 43 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 44 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 45 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.09 0.76 5.97 -51.93 -0.31 0.45 16 LS Contribution 381.19 15.07 5.74 5.74 Total: -1.00 -33.60 381.19 -11.02 -44.62 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -6.28 Total: 5.06 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -5.81 Total: -3.89 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: 0.29 Total: -57.67 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.07 Total: -10.27 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.60 -11.02 -44.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361785508.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.065 kcal (2) G-P(sol) polarization free energy of solvation -33.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds