Wall clock time and date at job start Tue Mar 31 2020 23:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38268 * 120.08611 * 2 1 4 4 C 1.37964 * 119.71403 * 180.23787 * 3 2 1 5 5 C 1.38841 * 120.50337 * 359.94943 * 4 3 2 6 6 C 1.37671 * 119.85124 * 359.62840 * 5 4 3 7 7 C 1.37907 * 120.08699 * 180.02562 * 2 1 3 8 8 C 1.50592 * 122.85696 * 180.91026 * 6 5 4 9 9 C 1.52782 * 110.86759 * 339.79406 * 8 6 5 10 10 N 1.47223 * 107.92573 * 47.44707 * 9 8 6 11 11 C 1.34779 * 121.34044 * 115.77794 * 10 9 8 12 12 O 1.21591 * 119.99184 * 354.79177 * 11 10 9 13 13 N 1.34772 * 120.00370 * 174.79013 * 11 10 9 14 14 C 1.40196 * 120.00218 * 185.11951 * 13 11 10 15 15 C 1.40400 * 125.96804 * 0.02562 * 14 13 11 16 16 C 1.35249 * 107.86352 * 179.97438 * 15 14 13 17 17 N 1.34960 * 107.86113 * 0.02562 * 16 15 14 18 18 C 1.46496 * 125.98000 * 180.02562 * 17 16 15 19 19 C 1.50703 * 109.47007 * 124.99789 * 18 17 16 20 20 H 1.07999 * 119.99789 * 0.02562 * 19 18 17 21 21 C 1.37881 * 119.99998 * 180.02562 * 19 18 17 22 22 N 1.31509 * 120.00192 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00026 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46928 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.47089 * 119.99999 * 23 21 19 26 26 H 1.48503 * 109.46929 * 240.00119 * 23 21 19 27 27 N 1.31203 * 125.97279 * 179.69130 * 14 13 11 28 28 C 1.46691 * 117.32613 * 295.80463 * 10 9 8 29 29 H 1.09000 * 109.46720 * 90.00421 * 1 2 3 30 30 H 1.09001 * 109.47270 * 210.00707 * 1 2 3 31 31 H 1.09006 * 109.46590 * 330.00350 * 1 2 3 32 32 H 1.07998 * 120.14310 * 0.50544 * 3 2 1 33 33 H 1.07994 * 119.74581 * 179.97438 * 4 3 2 34 34 H 1.08001 * 119.70478 * 359.97438 * 7 2 1 35 35 H 1.09007 * 109.20289 * 100.15033 * 8 6 5 36 36 H 1.08998 * 109.19887 * 219.43533 * 8 6 5 37 37 H 1.08999 * 109.77376 * 167.05276 * 9 8 6 38 38 H 1.09002 * 109.77005 * 287.84154 * 9 8 6 39 39 H 0.97007 * 120.00032 * 5.11740 * 13 11 10 40 40 H 1.07997 * 126.07111 * 0.02562 * 15 14 13 41 41 H 1.08000 * 126.06927 * 179.97438 * 16 15 14 42 42 H 1.09000 * 109.47577 * 245.00097 * 18 17 16 43 43 H 1.09002 * 109.47281 * 5.00664 * 18 17 16 44 44 H 0.96998 * 120.00233 * 179.97438 * 22 21 19 45 45 H 1.08998 * 109.43602 * 284.38575 * 28 10 9 46 46 H 1.09004 * 109.43575 * 164.51017 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2002 1.1964 0.0000 4 6 3.5798 1.1874 -0.0050 5 6 4.2767 -0.0134 -0.0089 6 6 3.5880 -1.2054 -0.0001 7 6 2.1984 -1.1933 -0.0005 8 6 4.2747 -2.5456 0.0164 9 6 5.7174 -2.4239 -0.4714 10 7 6.3369 -1.2847 0.2257 11 6 7.3708 -1.4591 1.0725 12 8 7.7490 -2.5816 1.3469 13 7 7.9853 -0.3893 1.6151 14 6 9.1266 -0.5650 2.4101 15 6 9.7341 -1.7920 2.7210 16 6 10.8046 -1.5375 3.5074 17 7 10.8757 -0.2023 3.6904 18 6 11.8870 0.5058 4.4791 19 6 12.5502 1.5528 3.6218 20 1 12.2482 1.6785 2.5925 21 6 13.5425 2.3502 4.1514 22 7 13.9106 2.1968 5.4046 23 14 14.3641 3.6485 3.0889 24 1 13.7733 3.6198 1.7268 25 1 14.1514 4.9888 3.6920 26 1 15.8202 3.3695 3.0036 27 7 9.8173 0.3888 2.9885 28 6 5.7833 0.0479 -0.0380 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8901 0.5138 32 1 1.6639 2.1338 0.0082 33 1 4.1216 2.1216 -0.0054 34 1 1.6550 -2.1266 -0.0005 35 1 4.2721 -2.9372 1.0337 36 1 3.7336 -3.2336 -0.6331 37 1 6.2633 -3.3386 -0.2401 38 1 5.7294 -2.2486 -1.5471 39 1 7.6379 0.5022 1.4556 40 1 9.4055 -2.7662 2.3902 41 1 11.4818 -2.2724 3.9170 42 1 11.4109 0.9849 5.3346 43 1 12.6361 -0.2038 4.8305 44 1 14.6090 2.7575 5.7771 45 1 6.1135 0.3903 -1.0187 46 1 6.1328 0.7434 0.7251 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361785508.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:56 Heat of formation + Delta-G solvation = 66.572948 kcal Electronic energy + Delta-G solvation = -28175.580553 eV Core-core repulsion = 24259.273691 eV Total energy + Delta-G solvation = -3916.306863 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.33560 -41.49589 -40.31708 -37.47484 -36.30725 -35.34604 -33.96420 -33.68232 -32.58356 -30.96138 -30.36989 -29.15338 -28.38929 -25.66094 -25.23366 -24.57804 -23.28906 -22.70962 -21.90864 -21.16057 -20.03931 -18.99843 -18.68643 -18.19764 -17.58147 -17.07179 -16.70706 -16.34742 -16.24045 -15.97280 -15.87389 -15.50801 -15.43626 -15.00206 -14.51493 -14.45255 -14.28661 -14.22435 -13.92224 -13.79712 -13.67418 -13.47596 -13.29024 -12.95308 -12.92724 -12.78417 -12.72290 -12.30232 -12.19598 -12.07950 -11.94466 -11.65010 -11.63189 -11.39000 -11.12366 -10.71952 -9.97940 -9.72428 -9.59824 -9.33937 -9.05014 -8.32374 -6.46347 0.37204 0.46100 1.04621 1.08555 1.37602 1.38903 1.52086 1.66522 1.99821 2.35465 2.35764 2.71871 2.82502 2.99182 3.60013 3.70207 3.92873 3.94221 4.00851 4.16137 4.17350 4.26983 4.28711 4.43095 4.53661 4.57503 4.59049 4.72801 4.79252 4.84729 4.85654 4.92160 4.94228 4.95088 5.02554 5.04032 5.12676 5.21416 5.28667 5.41202 5.52759 5.56068 5.59219 5.71321 5.74729 5.85020 5.95163 6.11298 6.29492 6.55872 6.67279 7.08930 7.23516 7.32340 8.75344 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017160 B = 0.002164 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.322145 B =12938.220625 C =13920.235952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.093 4.093 3 C -0.131 4.131 4 C -0.115 4.115 5 C -0.116 4.116 6 C -0.076 4.076 7 C -0.130 4.130 8 C -0.092 4.092 9 C 0.128 3.872 10 N -0.619 5.619 11 C 0.719 3.281 12 O -0.595 6.595 13 N -0.638 5.638 14 C 0.284 3.716 15 C -0.292 4.292 16 C 0.058 3.942 17 N -0.344 5.344 18 C 0.272 3.728 19 C -0.546 4.546 20 H 0.052 0.948 21 C 0.017 3.983 22 N -0.921 5.921 23 Si 0.973 3.027 24 H -0.274 1.274 25 H -0.273 1.273 26 H -0.270 1.270 27 N -0.347 5.347 28 C 0.148 3.852 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.136 0.864 35 H 0.069 0.931 36 H 0.112 0.888 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.416 0.584 40 H 0.167 0.833 41 H 0.202 0.798 42 H 0.021 0.979 43 H 0.059 0.941 44 H 0.272 0.728 45 H 0.103 0.897 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.200 -6.270 -14.412 30.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 C -0.149 4.149 4 C -0.134 4.134 5 C -0.117 4.117 6 C -0.076 4.076 7 C -0.148 4.148 8 C -0.129 4.129 9 C 0.006 3.994 10 N -0.356 5.356 11 C 0.420 3.580 12 O -0.472 6.472 13 N -0.291 5.291 14 C 0.028 3.972 15 C -0.324 4.324 16 C -0.091 4.091 17 N -0.126 5.126 18 C 0.153 3.847 19 C -0.584 4.584 20 H 0.071 0.929 21 C -0.183 4.183 22 N -0.560 5.560 23 Si 0.797 3.203 24 H -0.199 1.199 25 H -0.198 1.198 26 H -0.195 1.195 27 N -0.178 5.178 28 C 0.026 3.974 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.157 0.843 33 H 0.157 0.843 34 H 0.154 0.846 35 H 0.087 0.913 36 H 0.130 0.870 37 H 0.109 0.891 38 H 0.114 0.886 39 H 0.255 0.745 40 H 0.184 0.816 41 H 0.219 0.781 42 H 0.039 0.961 43 H 0.077 0.923 44 H 0.081 0.919 45 H 0.121 0.879 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -25.621 -5.716 -13.834 29.673 hybrid contribution 0.423 0.439 -0.180 0.635 sum -25.198 -5.277 -14.013 29.312 Atomic orbital electron populations 1.20830 0.89590 1.03463 1.03088 1.20207 0.97408 0.93109 0.98567 1.21236 0.94062 0.98511 1.01096 1.21259 0.94840 0.97586 0.99673 1.19779 0.94699 0.93714 1.03475 1.19646 0.93944 0.94570 0.99430 1.21265 0.93145 0.98640 1.01750 1.20831 0.94910 0.94329 1.02871 1.21689 0.92338 0.88807 0.96569 1.47194 1.32762 1.09964 1.45648 1.15565 0.80095 0.83399 0.78958 1.90823 1.67892 1.23443 1.65085 1.41566 1.26439 1.10383 1.50759 1.19077 0.89625 0.92960 0.95513 1.21665 1.00694 0.99083 1.10929 1.23153 0.99800 0.86451 0.99651 1.48822 1.21275 1.04888 1.37618 1.19350 0.83337 0.92559 0.89429 1.21428 1.20032 1.18859 0.98051 0.92942 1.25754 0.96819 0.99257 0.96500 1.69999 1.30827 1.40836 1.14293 0.85284 0.78220 0.78371 0.78433 1.19895 1.19845 1.19532 1.77238 1.02696 1.20947 1.16958 1.20629 0.90095 0.83382 1.03310 0.90216 0.90985 0.90863 0.84319 0.84274 0.84648 0.91258 0.86988 0.89095 0.88625 0.74465 0.81619 0.78112 0.96080 0.92281 0.91858 0.87923 0.89176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.02 71.24 0.71 -0.27 16 2 C -0.09 -1.27 5.87 -19.94 -0.12 -1.39 16 3 C -0.13 -1.82 9.71 22.21 0.22 -1.61 16 4 C -0.12 -1.72 9.62 22.35 0.22 -1.51 16 5 C -0.12 -1.96 5.82 -19.82 -0.12 -2.08 16 6 C -0.08 -1.25 5.76 -19.86 -0.11 -1.37 16 7 C -0.13 -1.89 9.25 22.37 0.21 -1.69 16 8 C -0.09 -1.36 5.87 29.74 0.17 -1.18 16 9 C 0.13 2.22 6.43 86.17 0.55 2.78 16 10 N -0.62 -13.65 2.94 -842.06 -2.47 -16.12 16 11 C 0.72 22.10 8.29 179.06 1.48 23.58 16 12 O -0.59 -21.80 13.00 -4.00 -0.05 -21.86 16 13 N -0.64 -20.85 5.35 -321.24 -1.72 -22.57 16 14 C 0.28 11.79 8.11 133.31 1.08 12.87 16 15 C -0.29 -11.87 9.61 22.11 0.21 -11.66 16 16 C 0.06 2.34 11.44 83.52 0.96 3.30 16 17 N -0.34 -16.48 3.67 -351.84 -1.29 -17.77 16 18 C 0.27 14.28 6.26 85.63 0.54 14.82 16 19 C -0.55 -31.03 9.23 25.60 0.24 -30.79 16 20 H 0.05 3.11 7.81 -2.91 -0.02 3.08 16 21 C 0.02 0.94 5.46 84.66 0.46 1.40 16 22 N -0.92 -52.43 13.29 21.45 0.28 -52.14 16 23 Si 0.97 43.81 29.54 68.60 2.03 45.84 16 24 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 26 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 27 N -0.35 -16.55 12.41 -54.44 -0.68 -17.22 16 28 C 0.15 2.50 6.07 85.63 0.52 3.02 16 29 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.07 0.54 8.09 -2.39 -0.02 0.52 16 31 H 0.07 0.54 8.09 -2.38 -0.02 0.52 16 32 H 0.14 1.39 8.06 -2.91 -0.02 1.36 16 33 H 0.14 1.57 8.05 -2.91 -0.02 1.55 16 34 H 0.14 1.46 8.05 -2.91 -0.02 1.44 16 35 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.11 1.06 8.10 -2.39 -0.02 1.04 16 37 H 0.09 1.82 7.09 -2.39 -0.02 1.81 16 38 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.42 11.31 6.48 -92.70 -0.60 10.71 16 40 H 0.17 6.56 5.93 -2.91 -0.02 6.54 16 41 H 0.20 6.41 8.06 -2.91 -0.02 6.38 16 42 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.06 3.02 8.07 -2.39 -0.02 3.00 16 44 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 45 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.09 1.47 5.97 -2.38 -0.01 1.45 16 Total: -1.00 -72.49 381.19 3.73 -68.76 By element: Atomic # 1 Polarization: 24.45 SS G_CDS: 0.41 Total: 24.86 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: 7.22 Total: 8.22 kcal Atomic # 7 Polarization: -119.95 SS G_CDS: -5.87 Total: -125.83 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -0.05 Total: -21.86 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -72.49 3.73 -68.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361785508.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.334 kcal (2) G-P(sol) polarization free energy of solvation -72.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds