Wall clock time and date at job start Tue Mar 31 2020 22:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99850 * 2 1 4 4 H 1.48500 * 109.47366 * 270.00092 * 3 2 1 5 5 H 1.48499 * 109.47049 * 30.00195 * 3 2 1 6 6 H 1.48501 * 109.47171 * 149.99912 * 3 2 1 7 7 C 1.37878 * 120.00239 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99860 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99851 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47205 * 180.02562 * 9 7 2 11 11 C 1.46502 * 119.99918 * 264.74646 * 10 9 7 12 12 C 1.50703 * 109.47248 * 269.99870 * 11 10 9 13 13 C 1.38220 * 119.61627 * 94.99736 * 12 11 10 14 14 C 1.38629 * 119.15755 * 179.97438 * 13 12 11 15 15 C 1.38672 * 118.42137 * 0.02562 * 14 13 12 16 16 C 1.38176 * 119.16308 * 359.97438 * 15 14 13 17 17 N 1.31853 * 119.61282 * 274.72668 * 12 11 10 18 18 C 1.34776 * 120.00422 * 84.73870 * 10 9 7 19 19 O 1.21275 * 120.00402 * 185.07168 * 18 10 9 20 20 C 1.50704 * 119.99790 * 5.08427 * 18 10 9 21 21 H 1.08997 * 109.46408 * 329.48267 * 20 18 10 22 22 C 1.53149 * 109.46709 * 89.47339 * 20 18 10 23 23 C 1.53267 * 109.35951 * 189.35726 * 22 20 18 24 24 C 1.51037 * 108.28018 * 311.47208 * 23 22 20 25 25 N 1.30090 * 127.39227 * 195.88136 * 24 23 22 26 26 C 1.34296 * 109.21212 * 179.68612 * 25 24 23 27 27 C 1.34849 * 108.07282 * 0.02562 * 26 25 24 28 28 N 1.35425 * 123.97864 * 15.57357 * 24 23 22 29 29 C 1.46469 * 124.82714 * 0.36098 * 28 24 23 30 30 H 0.96995 * 119.99899 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.47600 * 60.00147 * 9 7 2 32 32 H 1.09005 * 109.46944 * 299.99306 * 9 7 2 33 33 H 1.09001 * 109.46962 * 29.99723 * 11 10 9 34 34 H 1.09002 * 109.47185 * 149.99561 * 11 10 9 35 35 H 1.07998 * 120.42674 * 359.95539 * 13 12 11 36 36 H 1.08004 * 120.78667 * 179.97438 * 14 13 12 37 37 H 1.08002 * 120.42074 * 179.97438 * 15 14 13 38 38 H 1.08001 * 119.61981 * 179.97438 * 16 15 14 39 39 H 1.09001 * 109.51029 * 309.42272 * 22 20 18 40 40 H 1.08998 * 109.50855 * 69.51455 * 22 20 18 41 41 H 1.09000 * 109.98027 * 191.59872 * 23 22 20 42 42 H 1.08995 * 109.38460 * 71.00099 * 23 22 20 43 43 H 1.07996 * 125.96175 * 180.02562 * 26 25 24 44 44 H 1.08004 * 126.65941 * 179.97438 * 27 26 25 45 45 H 1.09001 * 109.58430 * 136.90530 * 29 28 24 46 46 H 1.09002 * 109.58738 * 257.18420 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2031 -3.6126 -0.0015 11 6 2.5918 -4.2443 -1.2649 12 6 1.6496 -5.3804 -1.5692 13 6 0.5603 -5.1627 -2.3917 14 6 -0.3000 -6.2147 -2.6658 15 6 -0.0315 -7.4516 -2.0994 16 6 1.0771 -7.5938 -1.2868 17 7 1.8771 -6.5718 -1.0522 18 6 2.7216 -4.0559 1.1610 19 8 3.5777 -4.9147 1.1548 20 6 2.2370 -3.4843 2.4686 21 1 1.9318 -2.4484 2.3213 22 6 1.0436 -4.3016 2.9718 23 6 0.4076 -3.5874 4.1695 24 6 1.5064 -3.2124 5.1355 25 7 1.3768 -2.8583 6.3806 26 6 2.5911 -2.6122 6.8987 27 6 3.5085 -2.8225 5.9330 28 7 2.8227 -3.2018 4.8175 29 6 3.3681 -3.5416 3.5013 30 1 -0.4850 0.8400 -0.0004 31 1 0.6248 -2.5563 -0.8919 32 1 0.6242 -2.5575 0.8881 33 1 2.5456 -3.5089 -2.0681 34 1 3.6087 -4.6279 -1.1816 35 1 0.3813 -4.1855 -2.8152 36 1 -1.1594 -6.0739 -3.3046 37 1 -0.6806 -8.2933 -2.2909 38 1 1.2929 -8.5537 -0.8416 39 1 0.3080 -4.4010 2.1735 40 1 1.3833 -5.2906 3.2790 41 1 -0.3051 -4.2489 4.6621 42 1 -0.1023 -2.6877 3.8253 43 1 2.7970 -2.3002 7.9119 44 1 4.5789 -2.7116 6.0251 45 1 4.1452 -2.8263 3.2320 46 1 3.7899 -4.5463 3.5288 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000368878135.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:51 Heat of formation + Delta-G solvation = 59.411643 kcal Electronic energy + Delta-G solvation = -30040.722039 eV Core-core repulsion = 26124.104639 eV Total energy + Delta-G solvation = -3916.617400 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.05880 -40.18097 -39.24432 -35.94552 -35.24979 -33.01243 -32.96073 -32.27466 -31.53329 -29.79122 -28.23162 -27.74229 -26.32644 -24.22605 -23.47534 -23.05662 -22.55188 -21.61745 -21.09948 -19.13962 -18.15259 -17.11851 -16.95299 -16.54855 -16.18922 -15.96809 -15.70014 -15.35648 -15.20324 -14.57506 -14.48069 -14.11637 -13.92607 -13.72574 -13.54471 -13.34306 -13.19753 -12.97038 -12.75724 -12.50929 -12.33932 -11.89149 -11.74531 -11.59496 -11.52327 -11.34818 -11.05540 -10.92276 -10.80643 -10.67782 -10.26100 -9.93406 -9.74398 -9.72636 -9.33906 -9.23433 -9.18902 -8.83808 -8.66166 -8.08842 -7.91482 -6.30447 -4.39101 1.20461 1.42969 2.31958 2.94835 3.15555 3.20735 3.24422 3.27197 3.39241 3.64642 4.13072 4.23999 4.49621 4.54257 4.73113 4.82750 4.89326 4.92688 4.99517 5.03888 5.17317 5.20881 5.27949 5.45669 5.48927 5.52823 5.62501 5.66342 5.69428 5.76974 5.85923 5.90992 5.97233 6.09476 6.12847 6.14256 6.27192 6.30707 6.37536 6.55996 6.59753 6.82985 7.00443 7.02932 7.34886 7.41307 7.64413 7.90990 8.11490 8.23229 8.36272 8.65026 8.84376 9.30289 10.75908 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007855 B = 0.004922 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3563.875800 B = 5687.579524 C = 8082.943872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.069 3.931 3 Si 0.894 3.106 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.545 4.545 8 H 0.062 0.938 9 C 0.237 3.763 10 N -0.588 5.588 11 C 0.166 3.834 12 C 0.119 3.881 13 C -0.155 4.155 14 C -0.080 4.080 15 C -0.180 4.180 16 C 0.092 3.908 17 N -0.461 5.461 18 C 0.533 3.467 19 O -0.553 6.553 20 C -0.124 4.124 21 H 0.127 0.873 22 C -0.106 4.106 23 C -0.032 4.032 24 C 0.214 3.786 25 N -0.496 5.496 26 C -0.038 4.038 27 C -0.056 4.056 28 N -0.449 5.449 29 C 0.122 3.878 30 H 0.267 0.733 31 H 0.038 0.962 32 H 0.039 0.961 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.138 0.862 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.150 0.850 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.166 0.834 44 H 0.171 0.829 45 H 0.091 0.909 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.407 -9.792 -0.041 9.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.135 4.135 3 Si 0.722 3.278 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.583 4.583 8 H 0.080 0.920 9 C 0.117 3.883 10 N -0.318 5.318 11 C 0.042 3.958 12 C -0.020 4.020 13 C -0.176 4.176 14 C -0.106 4.106 15 C -0.201 4.201 16 C -0.065 4.065 17 N -0.170 5.170 18 C 0.320 3.680 19 O -0.431 6.431 20 C -0.145 4.145 21 H 0.145 0.855 22 C -0.144 4.144 23 C -0.071 4.071 24 C -0.049 4.049 25 N -0.215 5.215 26 C -0.186 4.186 27 C -0.190 4.190 28 N -0.131 5.131 29 C -0.001 4.001 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.155 0.845 36 H 0.149 0.851 37 H 0.147 0.853 38 H 0.167 0.833 39 H 0.103 0.897 40 H 0.088 0.912 41 H 0.113 0.887 42 H 0.115 0.885 43 H 0.184 0.816 44 H 0.189 0.811 45 H 0.110 0.890 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.766 -10.170 0.764 10.227 hybrid contribution 0.395 1.210 -1.041 1.644 sum 1.161 -8.960 -0.277 9.039 Atomic orbital electron populations 1.69902 1.05960 1.27528 1.49001 1.24917 0.94845 0.99255 0.94471 0.86544 0.79925 0.83000 0.78358 1.20404 1.20959 1.19784 1.21469 0.93634 0.90322 1.52879 0.91998 1.19506 0.87529 0.82399 0.98853 1.48099 1.45573 1.34012 1.04106 1.20150 0.97071 0.90929 0.87652 1.21865 0.94735 0.93071 0.92360 1.22116 0.95434 1.00333 0.99683 1.21558 0.98523 0.92725 0.97777 1.22099 0.99561 0.98371 1.00031 1.22757 0.90952 0.97653 0.95150 1.67635 1.29532 0.99448 1.20380 1.19880 0.81478 0.81522 0.85139 1.90640 1.32152 1.32845 1.87508 1.21605 0.95671 1.04727 0.92507 0.85514 1.21491 0.96696 0.98479 0.97780 1.20180 0.93264 1.01973 0.91668 1.23316 0.84459 1.04082 0.93059 1.70031 1.25910 1.18937 1.06613 1.22273 0.88187 1.08251 0.99883 1.22517 0.99187 1.10103 0.87217 1.45397 1.07566 1.49584 1.10532 1.21792 0.96415 1.03044 0.78814 0.92349 0.94419 0.94360 0.88649 0.88939 0.84462 0.85076 0.85282 0.83263 0.89733 0.91159 0.88706 0.88531 0.81643 0.81133 0.89029 0.88593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.99 13.29 55.43 0.74 -22.26 16 2 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 19.79 29.54 -169.99 -5.02 14.76 16 4 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.54 -13.06 8.72 -34.44 -0.30 -13.36 16 8 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 9 C 0.24 5.08 4.79 -5.20 -0.02 5.05 16 10 N -0.59 -11.29 2.45 -176.43 -0.43 -11.73 16 11 C 0.17 2.88 5.73 -5.19 -0.03 2.85 16 12 C 0.12 1.93 6.36 -82.59 -0.53 1.40 16 13 C -0.16 -2.19 9.72 -39.44 -0.38 -2.57 16 14 C -0.08 -0.95 10.18 -39.28 -0.40 -1.35 16 15 C -0.18 -2.04 10.11 -39.44 -0.40 -2.44 16 16 C 0.09 1.23 11.18 -17.55 -0.20 1.03 16 17 N -0.46 -7.68 10.27 -9.48 -0.10 -7.78 16 18 C 0.53 10.23 6.67 -10.98 -0.07 10.16 16 19 O -0.55 -11.54 15.53 5.56 0.09 -11.45 16 20 C -0.12 -2.14 1.72 -91.56 -0.16 -2.30 16 21 H 0.13 2.49 6.01 -51.93 -0.31 2.18 16 22 C -0.11 -1.64 5.03 -26.52 -0.13 -1.77 16 23 C -0.03 -0.48 6.33 -27.58 -0.17 -0.66 16 24 C 0.21 3.65 7.65 -155.24 -1.19 2.47 16 25 N -0.50 -8.88 11.24 -10.62 -0.12 -9.00 16 26 C -0.04 -0.58 11.87 -17.68 -0.21 -0.79 16 27 C -0.06 -0.82 11.64 -16.76 -0.20 -1.02 16 28 N -0.45 -7.28 3.13 -113.76 -0.36 -7.64 16 29 C 0.12 1.94 6.04 -3.92 -0.02 1.92 16 30 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 31 H 0.04 0.84 8.03 -51.93 -0.42 0.43 16 32 H 0.04 0.86 6.07 -51.93 -0.32 0.54 16 33 H 0.10 1.53 7.97 -51.93 -0.41 1.12 16 34 H 0.09 1.67 7.36 -51.93 -0.38 1.29 16 35 H 0.14 1.82 8.06 -52.49 -0.42 1.40 16 36 H 0.13 1.20 8.06 -52.48 -0.42 0.77 16 37 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 38 H 0.15 1.60 8.06 -52.49 -0.42 1.17 16 39 H 0.08 1.32 7.74 -51.93 -0.40 0.91 16 40 H 0.07 1.07 8.12 -51.93 -0.42 0.64 16 41 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 43 H 0.17 2.02 8.06 -52.49 -0.42 1.59 16 44 H 0.17 1.90 8.06 -52.48 -0.42 1.47 16 45 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 46 H 0.10 1.52 7.52 -51.93 -0.39 1.13 16 LS Contribution 383.69 15.07 5.78 5.78 Total: -1.00 -30.38 383.69 -10.34 -40.72 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -6.40 Total: 8.32 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: -4.51 Total: 0.26 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: -0.27 Total: -58.39 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.09 Total: -11.45 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.38 -10.34 -40.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368878135.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.133 kcal (2) G-P(sol) polarization free energy of solvation -30.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds