Wall clock time and date at job start Tue Mar 31 2020 22:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99944 * 2 1 4 4 H 1.48502 * 109.47349 * 270.00451 * 3 2 1 5 5 H 1.48501 * 109.47034 * 30.00282 * 3 2 1 6 6 H 1.48500 * 109.47118 * 150.00527 * 3 2 1 7 7 C 1.37873 * 120.00059 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00300 * 359.97438 * 7 2 1 10 10 N 1.46493 * 109.47359 * 180.02562 * 9 7 2 11 11 C 1.46493 * 120.00337 * 95.15275 * 10 9 7 12 12 C 1.50705 * 109.47018 * 269.99925 * 11 10 9 13 13 C 1.38226 * 119.61972 * 94.99581 * 12 11 10 14 14 C 1.38624 * 119.16357 * 180.02562 * 13 12 11 15 15 C 1.38674 * 118.42216 * 0.02562 * 14 13 12 16 16 C 1.38185 * 119.15865 * 0.02562 * 15 14 13 17 17 N 1.31863 * 119.61930 * 275.29185 * 12 11 10 18 18 C 1.34783 * 120.00054 * 275.14915 * 10 9 7 19 19 O 1.21274 * 120.00339 * 174.77549 * 18 10 9 20 20 C 1.50696 * 119.99733 * 354.77822 * 18 10 9 21 21 H 1.09001 * 109.47503 * 34.66001 * 20 18 10 22 22 C 1.53151 * 109.46908 * 274.66964 * 20 18 10 23 23 C 1.53401 * 109.23955 * 170.50389 * 22 20 18 24 24 C 1.51032 * 108.21103 * 48.82175 * 23 22 20 25 25 N 1.30093 * 127.39247 * 164.06058 * 24 23 22 26 26 C 1.34291 * 109.21323 * 180.08183 * 25 24 23 27 27 C 1.34856 * 108.07164 * 359.96641 * 26 25 24 28 28 N 1.35423 * 123.98189 * 344.06281 * 24 23 22 29 29 C 1.46469 * 124.82328 * 359.85117 * 28 24 23 30 30 H 0.96998 * 119.99706 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.46781 * 60.00092 * 9 7 2 32 32 H 1.09001 * 109.47032 * 300.00834 * 9 7 2 33 33 H 1.08999 * 109.47414 * 149.99841 * 11 10 9 34 34 H 1.09001 * 109.47396 * 29.99820 * 11 10 9 35 35 H 1.07999 * 120.41929 * 0.04775 * 13 12 11 36 36 H 1.08002 * 120.79518 * 180.02562 * 14 13 12 37 37 H 1.07998 * 120.42225 * 180.02562 * 15 14 13 38 38 H 1.08009 * 119.61518 * 179.97438 * 16 15 14 39 39 H 1.08996 * 109.51013 * 290.43402 * 22 20 18 40 40 H 1.09005 * 109.50711 * 50.52758 * 22 20 18 41 41 H 1.09005 * 109.71184 * 168.50563 * 23 22 20 42 42 H 1.09004 * 109.71006 * 289.13824 * 23 22 20 43 43 H 1.08003 * 125.96514 * 179.97438 * 26 25 24 44 44 H 1.08004 * 126.65131 * 179.97438 * 27 26 25 45 45 H 1.09005 * 109.58085 * 223.09653 * 29 28 24 46 46 H 1.08998 * 109.58513 * 102.68658 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.5926 -4.2434 1.2630 12 6 3.8017 -3.5401 1.8238 13 6 3.6351 -2.5333 2.7562 14 6 4.7538 -1.8924 3.2654 15 6 6.0040 -2.2894 2.8155 16 6 6.0924 -3.3032 1.8806 17 7 5.0061 -3.8883 1.4151 18 6 2.7207 -4.0567 -1.1631 19 8 3.5789 -4.9136 -1.1567 20 6 2.2330 -3.4885 -2.4708 21 1 1.9951 -2.4326 -2.3420 22 6 0.9780 -4.2433 -2.9190 23 6 0.3509 -3.5160 -4.1152 24 6 1.4412 -3.2368 -5.1224 25 7 1.2964 -2.9049 -6.3719 26 6 2.5074 -2.7461 -6.9302 27 6 3.4387 -2.9896 -5.9857 28 7 2.7646 -3.2989 -4.8419 29 6 3.3272 -3.6395 -3.5332 30 1 -0.4849 0.8400 0.0004 31 1 0.6241 -2.5567 -0.8903 32 1 0.6247 -2.5570 0.8896 33 1 2.8314 -5.2922 1.0870 34 1 1.7690 -4.1726 1.9735 35 1 2.6459 -2.2499 3.0841 36 1 4.6542 -1.1026 3.9953 37 1 6.8972 -1.8124 3.1909 38 1 7.0624 -3.6180 1.5247 39 1 1.2484 -5.2581 -3.2109 40 1 0.2621 -4.2792 -2.0978 41 1 -0.4154 -4.1455 -4.5677 42 1 -0.0925 -2.5772 -3.7834 43 1 2.7016 -2.4713 -7.9564 44 1 4.5106 -2.9476 -6.1112 45 1 4.1538 -2.9667 -3.3046 46 1 3.6845 -4.6692 -3.5458 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000368878136.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:54 Heat of formation + Delta-G solvation = 60.866829 kcal Electronic energy + Delta-G solvation = -30285.292941 eV Core-core repulsion = 26368.738642 eV Total energy + Delta-G solvation = -3916.554299 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.06181 -40.03161 -39.16850 -35.92885 -35.24659 -33.00021 -32.89927 -32.06420 -31.41086 -29.76194 -28.22538 -27.73840 -26.26386 -24.19532 -23.30736 -23.02146 -22.47176 -21.53128 -21.10458 -19.12973 -18.15704 -17.10777 -16.87214 -16.46568 -16.24380 -15.82296 -15.60285 -15.23713 -15.14239 -14.53112 -14.37375 -14.18713 -13.86689 -13.64481 -13.43547 -13.36569 -13.05376 -12.88686 -12.60457 -12.52813 -12.31606 -11.85195 -11.73083 -11.56206 -11.45347 -11.38297 -11.04389 -10.92173 -10.78396 -10.71865 -10.26989 -9.89312 -9.72766 -9.50802 -9.33039 -9.14585 -9.04235 -8.72176 -8.57380 -8.09138 -7.89729 -6.30035 -4.36913 1.43429 1.67496 2.31636 2.94374 3.13872 3.21526 3.22442 3.27359 3.38940 3.70405 4.22116 4.31482 4.53722 4.66499 4.72514 4.84894 4.94765 5.04397 5.09869 5.12559 5.20989 5.37587 5.43848 5.47636 5.50689 5.55266 5.63714 5.66467 5.78817 5.84727 5.87197 5.96981 6.07341 6.10898 6.12255 6.14469 6.37304 6.46632 6.53204 6.56647 6.59581 6.99844 7.01553 7.05464 7.35937 7.41298 7.65217 7.92466 8.12722 8.36053 8.43017 8.66451 8.85260 9.31739 10.76399 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010012 B = 0.004538 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2795.886497 B = 6168.347883 C = 7428.339755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.071 3.929 3 Si 0.888 3.112 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.535 4.535 8 H 0.057 0.943 9 C 0.234 3.766 10 N -0.589 5.589 11 C 0.171 3.829 12 C 0.123 3.877 13 C -0.134 4.134 14 C -0.083 4.083 15 C -0.181 4.181 16 C 0.087 3.913 17 N -0.459 5.459 18 C 0.531 3.469 19 O -0.548 6.548 20 C -0.123 4.123 21 H 0.125 0.875 22 C -0.108 4.108 23 C -0.032 4.032 24 C 0.213 3.787 25 N -0.496 5.496 26 C -0.038 4.038 27 C -0.057 4.057 28 N -0.450 5.450 29 C 0.123 3.877 30 H 0.266 0.734 31 H 0.042 0.958 32 H 0.038 0.962 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.136 0.864 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.147 0.853 39 H 0.070 0.930 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.166 0.834 44 H 0.171 0.829 45 H 0.089 0.911 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.025 -5.853 0.626 7.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.133 4.133 3 Si 0.715 3.285 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.573 4.573 8 H 0.075 0.925 9 C 0.115 3.885 10 N -0.319 5.319 11 C 0.047 3.953 12 C -0.016 4.016 13 C -0.155 4.155 14 C -0.109 4.109 15 C -0.201 4.201 16 C -0.071 4.071 17 N -0.168 5.168 18 C 0.317 3.683 19 O -0.427 6.427 20 C -0.145 4.145 21 H 0.143 0.857 22 C -0.147 4.147 23 C -0.071 4.071 24 C -0.049 4.049 25 N -0.215 5.215 26 C -0.186 4.186 27 C -0.191 4.191 28 N -0.131 5.131 29 C 0.000 4.000 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.154 0.846 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.164 0.836 39 H 0.089 0.911 40 H 0.108 0.892 41 H 0.113 0.887 42 H 0.116 0.884 43 H 0.183 0.817 44 H 0.188 0.812 45 H 0.108 0.892 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.695 -6.778 -0.244 8.248 hybrid contribution 1.470 2.153 1.048 2.810 sum 6.164 -4.624 0.804 7.748 Atomic orbital electron populations 1.69893 1.05826 1.27400 1.49325 1.24863 0.94767 0.99008 0.94678 0.86643 0.79957 0.83390 0.78477 1.20467 1.20932 1.19889 1.21393 0.93349 0.90293 1.52310 0.92461 1.19558 0.87401 0.82587 0.98967 1.48134 1.44905 1.35026 1.03872 1.20139 0.92269 0.96744 0.86150 1.21625 0.93322 0.94211 0.92466 1.21986 0.99931 0.95967 0.97583 1.21502 0.92553 0.98229 0.98629 1.22045 0.98253 0.99619 1.00184 1.22647 0.97184 0.93285 0.93935 1.67571 0.98320 1.27669 1.23265 1.19894 0.81399 0.81873 0.85124 1.90664 1.31258 1.33221 1.87554 1.21597 0.95525 1.04958 0.92378 0.85670 1.21572 0.96126 0.98724 0.98261 1.20212 0.93367 1.02513 0.91007 1.23355 0.84189 1.04037 0.93368 1.70032 1.26286 1.19583 1.05599 1.22274 0.88058 1.08396 0.99855 1.22514 0.99226 1.10785 0.86577 1.45407 1.07331 1.50464 1.09922 1.21777 0.96375 1.02959 0.78853 0.92410 0.94007 0.94349 0.89335 0.89310 0.84633 0.85409 0.85630 0.83600 0.91135 0.89214 0.88695 0.88421 0.81659 0.81190 0.89237 0.88587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.78 13.29 55.43 0.74 -22.04 16 2 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.89 20.00 29.54 -169.99 -5.02 14.98 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.53 -12.72 8.70 -34.44 -0.30 -13.02 16 8 H 0.06 1.46 7.81 -52.48 -0.41 1.05 16 9 C 0.23 4.90 4.84 -5.20 -0.03 4.88 16 10 N -0.59 -11.08 2.45 -176.44 -0.43 -11.52 16 11 C 0.17 2.92 5.72 -5.19 -0.03 2.89 16 12 C 0.12 2.19 6.36 -82.58 -0.53 1.66 16 13 C -0.13 -2.21 9.72 -39.44 -0.38 -2.59 16 14 C -0.08 -1.22 10.18 -39.28 -0.40 -1.62 16 15 C -0.18 -2.52 10.11 -39.44 -0.40 -2.92 16 16 C 0.09 1.35 11.18 -17.55 -0.20 1.15 16 17 N -0.46 -8.47 10.27 -9.47 -0.10 -8.56 16 18 C 0.53 10.01 6.71 -10.98 -0.07 9.93 16 19 O -0.55 -11.33 15.54 5.56 0.09 -11.25 16 20 C -0.12 -2.09 1.70 -91.56 -0.16 -2.25 16 21 H 0.13 2.45 6.21 -51.93 -0.32 2.13 16 22 C -0.11 -1.58 4.96 -26.45 -0.13 -1.71 16 23 C -0.03 -0.47 6.33 -27.51 -0.17 -0.64 16 24 C 0.21 3.61 7.65 -155.24 -1.19 2.42 16 25 N -0.50 -8.84 11.24 -10.62 -0.12 -8.96 16 26 C -0.04 -0.58 11.87 -17.68 -0.21 -0.79 16 27 C -0.06 -0.84 11.64 -16.76 -0.20 -1.03 16 28 N -0.45 -7.26 3.13 -113.76 -0.36 -7.61 16 29 C 0.12 1.96 5.99 -3.92 -0.02 1.93 16 30 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 31 H 0.04 0.89 5.72 -51.93 -0.30 0.60 16 32 H 0.04 0.83 7.83 -51.93 -0.41 0.43 16 33 H 0.09 1.51 7.50 -51.93 -0.39 1.12 16 34 H 0.09 1.30 7.76 -51.93 -0.40 0.90 16 35 H 0.14 2.13 8.06 -52.49 -0.42 1.70 16 36 H 0.13 1.56 8.06 -52.49 -0.42 1.13 16 37 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 38 H 0.15 1.86 8.06 -52.48 -0.42 1.44 16 39 H 0.07 0.98 8.12 -51.93 -0.42 0.56 16 40 H 0.09 1.26 7.37 -51.93 -0.38 0.88 16 41 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.10 1.49 8.14 -51.93 -0.42 1.06 16 43 H 0.17 2.02 8.06 -52.48 -0.42 1.60 16 44 H 0.17 1.92 8.06 -52.48 -0.42 1.49 16 45 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 46 H 0.10 1.52 7.52 -51.93 -0.39 1.13 16 LS Contribution 382.84 15.07 5.77 5.77 Total: -1.00 -30.45 382.84 -10.30 -40.76 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -6.36 Total: 8.47 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -4.51 Total: -0.04 kcal Atomic # 7 Polarization: -58.42 SS G_CDS: -0.27 Total: -58.69 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.09 Total: -11.25 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.45 -10.30 -40.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368878136.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.624 kcal (2) G-P(sol) polarization free energy of solvation -30.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds