Wall clock time and date at job start Tue Mar 31 2020 23:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99938 * 2 1 4 4 H 1.48505 * 109.46936 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47466 * 300.00174 * 3 2 1 6 6 H 1.48500 * 109.46820 * 60.00580 * 3 2 1 7 7 C 1.37876 * 120.00269 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00509 * 173.55059 * 7 2 1 9 9 C 1.50701 * 119.99728 * 353.55224 * 7 2 1 10 10 C 1.52998 * 115.54950 * 85.40443 * 9 7 2 11 11 N 1.46500 * 109.47306 * 65.14534 * 10 9 7 12 12 C 1.34770 * 120.00676 * 178.28217 * 11 10 9 13 13 O 1.21589 * 119.99954 * 359.97438 * 12 11 10 14 14 N 1.34774 * 120.00320 * 179.97438 * 12 11 10 15 15 C 1.46505 * 120.00085 * 179.97438 * 14 12 11 16 16 C 1.50695 * 109.47268 * 180.02562 * 15 14 12 17 17 C 1.38278 * 119.93644 * 89.99693 * 16 15 14 18 18 C 1.38121 * 120.06751 * 180.25306 * 17 16 15 19 19 C 1.38839 * 119.93098 * 359.49356 * 18 17 16 20 20 N 1.40181 * 120.06646 * 180.22675 * 19 18 17 21 21 C 1.35232 * 126.05343 * 359.97376 * 20 19 18 22 22 C 1.35321 * 107.71193 * 179.86780 * 21 20 19 23 23 C 1.39916 * 107.93124 * 0.39309 * 22 21 20 24 24 N 1.30878 * 108.24476 * 359.75160 * 23 22 21 25 25 C 1.38839 * 119.86735 * 0.48890 * 19 18 17 26 26 C 1.38124 * 119.93125 * 359.75916 * 25 19 18 27 27 C 1.52995 * 117.49981 * 231.07678 * 9 7 2 28 28 C 1.52997 * 117.50091 * 299.73509 * 9 7 2 29 29 H 0.97000 * 120.00030 * 5.05384 * 1 2 3 30 30 H 1.08994 * 109.47700 * 305.14222 * 10 9 7 31 31 H 1.09005 * 109.47021 * 185.13719 * 10 9 7 32 32 H 0.97001 * 119.99637 * 358.28062 * 11 10 9 33 33 H 0.96994 * 120.00454 * 0.02562 * 14 12 11 34 34 H 1.08999 * 109.47351 * 59.99561 * 15 14 12 35 35 H 1.09004 * 109.46565 * 300.00157 * 15 14 12 36 36 H 1.07999 * 119.96125 * 359.97438 * 17 16 15 37 37 H 1.08001 * 120.03036 * 179.72272 * 18 17 16 38 38 H 1.08002 * 126.14047 * 359.97438 * 21 20 19 39 39 H 1.08002 * 126.03039 * 180.14042 * 22 21 20 40 40 H 1.07999 * 125.87833 * 179.78296 * 23 22 21 41 41 H 1.08000 * 120.03528 * 179.79154 * 25 19 18 42 42 H 1.07999 * 119.96319 * 179.97438 * 26 25 19 43 43 H 1.08999 * 117.50459 * 215.00390 * 27 9 7 44 44 H 1.09005 * 117.50052 * 0.02562 * 27 9 7 45 45 H 1.09005 * 117.49526 * 359.97438 * 28 9 7 46 46 H 1.08999 * 117.50268 * 144.97472 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0794 -1.1970 -0.1056 9 6 1.2582 -2.4951 0.1454 10 6 0.7021 -3.0859 -1.1517 11 7 1.8111 -3.4583 -2.0335 12 6 1.5599 -4.0346 -3.2256 13 8 0.4129 -4.2459 -3.5692 14 7 2.5802 -4.3767 -4.0371 15 6 2.3072 -5.0036 -5.3328 16 6 3.6084 -5.2846 -6.0390 17 6 4.2496 -6.4948 -5.8486 18 6 5.4450 -6.7531 -6.4905 19 6 5.9974 -5.8003 -7.3359 20 7 7.2081 -6.0614 -7.9925 21 6 7.9397 -7.1943 -7.8922 22 6 9.0303 -7.0511 -8.6804 23 6 8.9687 -5.7864 -9.2755 24 7 7.8773 -5.1927 -8.8641 25 6 5.3511 -4.5862 -7.5253 26 6 4.1585 -4.3317 -6.8766 27 6 1.7470 -3.4738 1.2150 28 6 0.4418 -2.7017 1.4228 29 1 -0.4850 0.8368 -0.0740 30 1 0.0754 -2.3456 -1.6489 31 1 0.1075 -3.9703 -0.9225 32 1 2.7262 -3.2901 -1.7594 33 1 3.4953 -4.2085 -3.7630 34 1 1.7009 -4.3322 -5.9408 35 1 1.7691 -5.9388 -5.1776 36 1 3.8175 -7.2370 -5.1938 37 1 5.9476 -7.6968 -6.3378 38 1 7.6963 -8.0587 -7.2922 39 1 9.8125 -7.7824 -8.8216 40 1 9.6962 -5.3716 -9.9575 41 1 5.7801 -3.8418 -8.1797 42 1 3.6555 -3.3874 -7.0233 43 1 1.6726 -4.5387 0.9946 44 1 2.6083 -3.1765 1.8134 45 1 0.4449 -1.8968 2.1578 46 1 -0.4916 -3.2583 1.3391 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430203626.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:06 Heat of formation + Delta-G solvation = 84.525912 kcal Electronic energy + Delta-G solvation = -27459.904466 eV Core-core repulsion = 23544.376102 eV Total energy + Delta-G solvation = -3915.528364 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.48362 -41.03709 -40.12515 -38.53436 -36.21094 -34.92723 -34.12773 -33.92312 -32.32338 -31.16004 -30.67406 -28.19845 -27.31990 -26.09669 -24.20801 -23.52887 -22.94264 -21.77408 -21.54843 -21.45894 -21.21357 -19.38725 -19.21956 -18.15550 -17.22420 -16.82364 -16.59750 -16.32015 -16.25364 -16.21886 -15.97599 -15.70947 -15.17551 -15.03509 -14.79922 -14.58612 -14.42849 -14.25185 -13.98402 -13.68253 -13.62247 -13.47673 -13.30925 -12.92408 -12.83255 -12.58347 -12.33116 -12.20816 -12.01962 -11.67931 -11.53892 -11.41522 -11.18985 -10.83960 -10.45562 -10.27685 -10.14474 -10.07786 -10.02229 -9.55931 -9.06262 -8.08883 -6.21463 -0.29074 0.27812 1.10553 1.39890 1.40718 1.44590 1.53461 1.84252 1.93081 2.28116 2.42703 2.71945 3.19420 3.40792 3.46113 3.63455 3.68236 3.78424 3.87162 3.99489 4.22122 4.27660 4.30443 4.44030 4.58703 4.59504 4.68122 4.70440 4.75321 4.76530 4.77796 4.97651 5.01894 5.03673 5.05910 5.14015 5.21836 5.29827 5.50473 5.52108 5.61626 5.62391 5.64286 5.72753 5.74518 5.80747 6.16234 6.18500 6.38530 6.62248 6.85706 7.25642 7.47679 7.71111 8.98790 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014463 B = 0.002007 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.557628 B =13945.637605 C =14790.213297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.023 3.977 3 Si 0.948 3.052 4 H -0.262 1.262 5 H -0.289 1.289 6 H -0.285 1.285 7 C -0.500 4.500 8 H 0.063 0.937 9 C 0.002 3.998 10 C 0.200 3.800 11 N -0.716 5.716 12 C 0.697 3.303 13 O -0.645 6.645 14 N -0.730 5.730 15 C 0.185 3.815 16 C -0.114 4.114 17 C -0.064 4.064 18 C -0.137 4.137 19 C 0.151 3.849 20 N -0.338 5.338 21 C 0.046 3.954 22 C -0.266 4.266 23 C 0.050 3.950 24 N -0.339 5.339 25 C -0.136 4.136 26 C -0.075 4.075 27 C -0.174 4.174 28 C -0.159 4.159 29 H 0.258 0.742 30 H 0.025 0.975 31 H 0.034 0.966 32 H 0.406 0.594 33 H 0.408 0.592 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.157 0.843 37 H 0.161 0.839 38 H 0.211 0.789 39 H 0.182 0.818 40 H 0.215 0.785 41 H 0.128 0.872 42 H 0.137 0.863 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.063 0.937 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.937 -17.404 -15.695 29.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.177 4.177 3 Si 0.775 3.225 4 H -0.186 1.186 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.538 4.538 8 H 0.081 0.919 9 C 0.002 3.998 10 C 0.075 3.925 11 N -0.369 5.369 12 C 0.397 3.603 13 O -0.528 6.528 14 N -0.387 5.387 15 C 0.061 3.939 16 C -0.115 4.115 17 C -0.083 4.083 18 C -0.157 4.157 19 C 0.058 3.942 20 N -0.114 5.114 21 C -0.095 4.095 22 C -0.294 4.294 23 C -0.136 4.136 24 N -0.158 5.158 25 C -0.156 4.156 26 C -0.094 4.094 27 C -0.211 4.211 28 C -0.198 4.198 29 H 0.067 0.933 30 H 0.043 0.957 31 H 0.052 0.948 32 H 0.241 0.759 33 H 0.244 0.756 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.175 0.825 37 H 0.178 0.822 38 H 0.227 0.773 39 H 0.199 0.801 40 H 0.231 0.769 41 H 0.146 0.854 42 H 0.155 0.845 43 H 0.108 0.892 44 H 0.104 0.896 45 H 0.082 0.918 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 15.974 -16.409 -15.970 27.919 hybrid contribution 1.178 0.930 0.183 1.512 sum 17.152 -15.479 -15.787 27.982 Atomic orbital electron populations 1.70106 1.07230 1.27189 1.49992 1.25703 0.95459 1.02044 0.94541 0.85657 0.79503 0.80270 0.77074 1.18578 1.21519 1.21114 1.20668 0.93072 0.89532 1.50530 0.91862 1.19090 0.99814 0.94531 0.86398 1.20381 0.87010 0.95210 0.89870 1.44923 1.10974 1.63770 1.17226 1.16168 0.84738 0.78586 0.80833 1.90850 1.21920 1.63548 1.76457 1.44989 1.08160 1.66631 1.18935 1.19956 0.93559 0.98265 0.82071 1.19831 0.96796 0.95468 0.99382 1.21162 0.93261 0.96386 0.97508 1.21052 0.97261 0.99706 0.97688 1.17892 0.84519 0.96281 0.95482 1.46082 1.17223 1.13019 1.35120 1.23355 0.92822 0.91972 1.01355 1.22050 1.02498 0.99956 1.04862 1.24709 0.95236 0.94455 0.99212 1.77437 1.10186 1.17846 1.10339 1.20871 0.96256 0.96295 1.02206 1.21100 0.94140 0.99433 0.94762 1.22997 0.97284 0.96289 1.04550 1.22434 0.93860 1.01424 1.02044 0.93279 0.95667 0.94781 0.75873 0.75622 0.91867 0.90505 0.82540 0.82156 0.77269 0.80116 0.76860 0.85446 0.84485 0.89204 0.89574 0.91845 0.91052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.55 12.91 21.45 0.28 -51.27 16 2 C 0.02 1.23 5.39 84.66 0.46 1.68 16 3 Si 0.95 42.40 29.55 68.60 2.03 44.42 16 4 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 7 C -0.50 -25.38 8.63 25.60 0.22 -25.16 16 8 H 0.06 3.10 7.82 -2.91 -0.02 3.08 16 9 C 0.00 0.12 1.38 -52.93 -0.07 0.04 16 10 C 0.20 9.21 5.50 86.38 0.48 9.69 16 11 N -0.72 -27.34 5.48 -478.55 -2.62 -29.96 16 12 C 0.70 25.87 8.57 179.06 1.53 27.40 16 13 O -0.64 -29.58 16.34 -4.00 -0.07 -29.65 16 14 N -0.73 -19.10 5.55 -482.30 -2.68 -21.78 16 15 C 0.18 4.13 5.80 85.63 0.50 4.62 16 16 C -0.11 -1.98 5.25 -19.85 -0.10 -2.09 16 17 C -0.06 -0.87 9.69 22.25 0.22 -0.66 16 18 C -0.14 -1.78 9.46 22.39 0.21 -1.57 16 19 C 0.15 2.77 6.69 38.09 0.25 3.03 16 20 N -0.34 -6.36 3.80 -187.75 -0.71 -7.07 16 21 C 0.05 0.57 10.80 83.50 0.90 1.47 16 22 C -0.27 -2.96 10.81 22.00 0.24 -2.72 16 23 C 0.05 0.73 12.03 85.24 1.03 1.75 16 24 N -0.34 -7.23 11.87 -56.97 -0.68 -7.90 16 25 C -0.14 -2.73 9.66 22.39 0.22 -2.51 16 26 C -0.08 -1.40 9.69 22.25 0.22 -1.18 16 27 C -0.17 -6.79 9.96 30.61 0.30 -6.49 16 28 C -0.16 -7.21 9.42 30.61 0.29 -6.92 16 29 H 0.26 14.16 8.32 -92.71 -0.77 13.39 16 30 H 0.02 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.03 1.55 8.09 -2.38 -0.02 1.53 16 32 H 0.41 13.71 8.38 -92.71 -0.78 12.94 16 33 H 0.41 8.67 8.48 -92.71 -0.79 7.89 16 34 H 0.06 1.57 8.08 -2.39 -0.02 1.55 16 35 H 0.08 1.70 8.08 -2.38 -0.02 1.68 16 36 H 0.16 1.52 8.06 -2.91 -0.02 1.49 16 37 H 0.16 1.06 6.74 -2.91 -0.02 1.04 16 38 H 0.21 0.89 7.04 -2.91 -0.02 0.86 16 39 H 0.18 0.87 8.06 -2.91 -0.02 0.85 16 40 H 0.21 1.58 8.06 -2.91 -0.02 1.55 16 41 H 0.13 2.75 7.70 -2.91 -0.02 2.72 16 42 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 43 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 44 H 0.09 3.23 8.14 -2.38 -0.02 3.21 16 45 H 0.06 3.09 8.14 -2.38 -0.02 3.08 16 46 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 Total: -1.00 -72.67 397.21 1.88 -70.79 By element: Atomic # 1 Polarization: 32.56 SS G_CDS: -0.55 Total: 32.02 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: 6.88 Total: 0.39 kcal Atomic # 7 Polarization: -111.57 SS G_CDS: -6.41 Total: -117.98 kcal Atomic # 8 Polarization: -29.58 SS G_CDS: -0.07 Total: -29.65 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.42 kcal Total: -72.67 1.88 -70.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430203626.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.316 kcal (2) G-P(sol) polarization free energy of solvation -72.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds