Wall clock time and date at job start Tue Mar 31 2020 22:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86799 * 120.00123 * 2 1 4 4 H 1.48492 * 109.47211 * 269.99851 * 3 2 1 5 5 H 1.48502 * 109.46892 * 29.99697 * 3 2 1 6 6 H 1.48496 * 109.47204 * 149.99440 * 3 2 1 7 7 C 1.38958 * 120.00145 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00146 * 180.02562 * 7 2 1 9 9 N 1.37094 * 119.99364 * 0.02562 * 7 2 1 10 10 C 1.34782 * 119.99298 * 179.97438 * 9 7 2 11 11 O 1.21291 * 120.00439 * 359.97438 * 10 9 7 12 12 C 1.50704 * 119.99930 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47276 * 179.73994 * 12 10 9 14 14 C 1.46901 * 111.00150 * 76.61380 * 13 12 10 15 15 C 1.53000 * 109.46785 * 190.00104 * 14 13 12 16 16 C 1.50703 * 109.46723 * 180.02562 * 15 14 13 17 17 C 1.38227 * 119.61831 * 125.02459 * 16 15 14 18 18 C 1.38632 * 119.16020 * 179.97438 * 17 16 15 19 19 C 1.38672 * 118.42220 * 359.74488 * 18 17 16 20 20 C 1.38191 * 119.16003 * 0.49646 * 19 18 17 21 21 N 1.31856 * 119.61809 * 304.99659 * 16 15 14 22 22 C 1.46904 * 111.00263 * 200.57103 * 13 12 10 23 23 C 1.50698 * 109.46933 * 71.95762 * 22 13 12 24 24 C 1.38673 * 120.42584 * 264.76529 * 23 22 13 25 25 C 1.38624 * 118.42282 * 179.78667 * 24 23 22 26 26 C 1.38221 * 119.16168 * 0.51348 * 25 24 23 27 27 N 1.31857 * 120.76470 * 359.72464 * 26 25 24 28 28 C 1.31887 * 121.72306 * 0.02562 * 27 26 25 29 29 H 0.97001 * 119.99833 * 0.02562 * 1 2 3 30 30 H 0.96996 * 120.00649 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.47027 * 59.73650 * 12 10 9 32 32 H 1.08999 * 109.47012 * 299.74035 * 12 10 9 33 33 H 1.08997 * 109.46808 * 70.00437 * 14 13 12 34 34 H 1.09000 * 109.47026 * 310.00251 * 14 13 12 35 35 H 1.08997 * 109.47175 * 60.00558 * 15 14 13 36 36 H 1.09000 * 109.47458 * 299.99883 * 15 14 13 37 37 H 1.07997 * 120.42136 * 359.95222 * 17 16 15 38 38 H 1.08000 * 120.79278 * 180.02562 * 18 17 16 39 39 H 1.07995 * 120.42206 * 180.24605 * 19 18 17 40 40 H 1.07996 * 119.61432 * 179.77276 * 20 19 18 41 41 H 1.08991 * 109.47286 * 191.96594 * 22 13 12 42 42 H 1.09007 * 109.46514 * 311.96450 * 22 13 12 43 43 H 1.08001 * 120.78165 * 0.02562 * 24 23 22 44 44 H 1.08001 * 120.41478 * 180.21802 * 25 24 23 45 45 H 1.07996 * 119.61898 * 179.74857 * 26 25 24 46 46 H 1.07997 * 119.61667 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5579 0.0001 12 6 1.2438 -4.8630 0.0000 13 7 2.1983 -5.9795 -0.0062 14 6 2.7865 -6.1767 1.3254 15 6 3.9462 -7.1700 1.2286 16 6 4.5492 -7.3727 2.5948 17 6 4.6562 -8.6503 3.1115 18 6 5.2129 -8.8259 4.3690 19 6 5.6480 -7.7054 5.0605 20 6 5.5036 -6.4589 4.4818 21 7 4.9690 -6.3294 3.2831 22 6 1.5628 -7.2129 -0.4889 23 6 1.3225 -7.1065 -1.9728 24 6 0.0931 -6.6850 -2.4567 25 6 -0.0811 -6.5980 -3.8292 26 6 0.9653 -6.9422 -4.6641 27 7 2.1194 -7.3437 -4.1687 28 6 2.3224 -7.4338 -2.8687 29 1 -0.4850 0.8401 -0.0004 30 1 0.3534 -2.3906 0.0005 31 1 0.6140 -4.9185 -0.8879 32 1 0.6203 -4.9229 0.8920 33 1 2.0281 -6.5685 2.0031 34 1 3.1551 -5.2235 1.7045 35 1 4.7046 -6.7782 0.5509 36 1 3.5776 -8.1231 0.8495 37 1 4.3103 -9.5009 2.5430 38 1 5.3097 -9.8123 4.7979 39 1 6.0902 -7.8053 6.0407 40 1 5.8366 -5.5810 5.0154 41 1 2.2161 -8.0615 -0.2865 42 1 0.6116 -7.3561 0.0239 43 1 -0.7082 -6.4270 -1.7801 44 1 -1.0242 -6.2701 -4.2409 45 1 0.8363 -6.8810 -5.7346 46 1 3.2814 -7.7664 -2.5000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430338374.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:54 Heat of formation + Delta-G solvation = 21.100636 kcal Electronic energy + Delta-G solvation = -28596.461456 eV Core-core repulsion = 24678.182765 eV Total energy + Delta-G solvation = -3918.278690 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.29395 -40.99707 -40.16645 -38.22637 -35.87196 -34.58672 -33.37824 -33.25497 -33.12023 -32.48730 -30.37898 -28.75159 -27.00014 -25.90599 -24.46663 -24.39469 -23.76781 -22.67759 -21.71339 -20.89691 -19.86087 -17.97529 -17.93557 -17.76730 -17.22565 -17.17915 -16.76086 -16.56510 -16.48070 -16.18656 -15.82997 -15.34436 -15.19531 -15.05726 -14.90905 -14.41308 -14.23422 -14.05651 -13.95926 -13.86181 -13.63952 -13.53163 -13.32413 -13.09800 -12.89325 -12.66918 -12.41527 -12.37971 -12.14446 -12.06591 -11.81314 -11.45413 -10.76601 -10.68444 -10.41544 -10.24363 -10.22413 -9.97602 -9.87655 -9.85259 -9.18581 -8.45299 -5.93059 0.20759 0.23972 0.41052 0.44199 1.36702 1.39417 1.52407 2.10016 2.28567 2.64526 2.90635 3.06716 3.21289 3.35430 3.49281 3.62950 3.87969 3.90629 3.97935 4.04541 4.11717 4.14614 4.18202 4.22895 4.28763 4.30281 4.37145 4.45554 4.51250 4.53346 4.59930 4.68309 4.77676 4.87061 4.88576 4.94856 5.13832 5.16304 5.25163 5.30513 5.34800 5.36925 5.41729 5.84911 5.86267 5.89544 6.08606 6.20486 6.63695 7.10417 7.15981 7.18494 7.59672 8.17543 8.72411 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.006085 B = 0.004074 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4600.746819 B = 6870.932826 C =10831.226328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.012 4.012 3 Si 0.989 3.011 4 H -0.271 1.271 5 H -0.268 1.268 6 H -0.276 1.276 7 C -0.329 4.329 8 H 0.074 0.926 9 N -0.578 5.578 10 C 0.441 3.559 11 O -0.610 6.610 12 C 0.059 3.941 13 N -0.527 5.527 14 C 0.081 3.919 15 C -0.056 4.056 16 C 0.111 3.889 17 C -0.168 4.168 18 C -0.075 4.075 19 C -0.176 4.176 20 C 0.077 3.923 21 N -0.525 5.525 22 C 0.096 3.904 23 C -0.131 4.131 24 C -0.081 4.081 25 C -0.173 4.173 26 C 0.079 3.921 27 N -0.517 5.517 28 C 0.103 3.897 29 H 0.277 0.723 30 H 0.394 0.606 31 H 0.104 0.896 32 H 0.069 0.931 33 H 0.038 0.962 34 H 0.049 0.951 35 H 0.067 0.933 36 H 0.111 0.889 37 H 0.164 0.836 38 H 0.170 0.830 39 H 0.163 0.837 40 H 0.159 0.841 41 H 0.112 0.888 42 H 0.066 0.934 43 H 0.151 0.849 44 H 0.160 0.840 45 H 0.174 0.826 46 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.271 -22.314 4.167 22.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.212 4.212 3 Si 0.813 3.187 4 H -0.197 1.197 5 H -0.193 1.193 6 H -0.201 1.201 7 C -0.459 4.459 8 H 0.092 0.908 9 N -0.217 5.217 10 C 0.228 3.772 11 O -0.495 6.495 12 C -0.073 4.073 13 N -0.251 5.251 14 C -0.047 4.047 15 C -0.094 4.094 16 C -0.027 4.027 17 C -0.188 4.188 18 C -0.100 4.100 19 C -0.196 4.196 20 C -0.080 4.080 21 N -0.235 5.235 22 C -0.031 4.031 23 C -0.133 4.133 24 C -0.107 4.107 25 C -0.192 4.192 26 C -0.077 4.077 27 N -0.226 5.226 28 C -0.054 4.054 29 H 0.086 0.914 30 H 0.228 0.772 31 H 0.122 0.878 32 H 0.087 0.913 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.129 0.871 37 H 0.181 0.819 38 H 0.187 0.813 39 H 0.180 0.820 40 H 0.176 0.824 41 H 0.130 0.870 42 H 0.084 0.916 43 H 0.169 0.831 44 H 0.177 0.823 45 H 0.191 0.809 46 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 1.383 -21.436 2.918 21.678 hybrid contribution -1.169 0.781 1.377 1.968 sum 0.214 -20.655 4.295 21.098 Atomic orbital electron populations 1.69664 1.06679 1.29121 1.50799 1.25962 0.96539 1.02141 0.96509 0.84993 0.77902 0.77213 0.78631 1.19686 1.19275 1.20060 1.19600 0.92488 0.84165 1.49663 0.90821 1.41910 1.09126 1.04665 1.65951 1.20877 0.88406 0.85974 0.81899 1.90510 1.15742 1.87807 1.55432 1.21723 0.93578 0.88955 1.02997 1.61395 1.33361 1.03879 1.26456 1.21811 0.95491 0.99409 0.87959 1.20498 0.96877 1.00379 0.91629 1.21441 0.95391 0.89655 0.96213 1.22295 1.01294 0.97656 0.97538 1.22039 0.93836 1.00581 0.93580 1.22467 1.01461 0.93007 1.02632 1.23109 0.95109 0.98819 0.90944 1.67493 1.10969 1.36113 1.08938 1.21167 0.99835 0.92336 0.89785 1.20874 0.94813 1.00492 0.97143 1.21883 0.97244 0.95142 0.96472 1.22436 1.01750 1.00936 0.94103 1.23193 0.88362 0.94409 1.01769 1.67681 1.24395 1.14587 1.15897 1.22803 0.98952 0.95510 0.88146 0.91378 0.77202 0.87847 0.91340 0.94355 0.93233 0.91457 0.87054 0.81887 0.81294 0.81974 0.82371 0.87019 0.91591 0.83126 0.82253 0.80917 0.82402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.94 13.05 21.67 0.28 -50.66 16 2 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 3 Si 0.99 44.66 29.55 68.60 2.03 46.68 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 5 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 6 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 7 C -0.33 -19.54 9.68 84.04 0.81 -18.72 16 8 H 0.07 4.71 7.16 -2.91 -0.02 4.68 16 9 N -0.58 -30.99 5.29 -306.98 -1.62 -32.61 16 10 C 0.44 22.13 7.45 87.66 0.65 22.78 16 11 O -0.61 -35.79 14.87 -3.06 -0.05 -35.83 16 12 C 0.06 2.10 5.32 85.56 0.45 2.55 16 13 N -0.53 -16.69 4.00 -905.38 -3.62 -20.31 16 14 C 0.08 2.58 4.43 86.30 0.38 2.97 16 15 C -0.06 -1.46 5.58 29.85 0.17 -1.30 16 16 C 0.11 2.90 6.18 42.55 0.26 3.17 16 17 C -0.17 -3.00 9.71 22.36 0.22 -2.78 16 18 C -0.07 -1.09 10.18 22.47 0.23 -0.87 16 19 C -0.18 -2.98 10.11 22.36 0.23 -2.75 16 20 C 0.08 1.89 11.18 84.67 0.95 2.84 16 21 N -0.53 -16.71 9.88 -183.88 -1.82 -18.53 16 22 C 0.10 2.09 5.00 85.56 0.43 2.52 16 23 C -0.13 -3.17 4.99 -19.77 -0.10 -3.27 16 24 C -0.08 -1.78 8.35 22.47 0.19 -1.59 16 25 C -0.17 -3.62 10.11 22.36 0.23 -3.39 16 26 C 0.08 1.88 11.18 84.69 0.95 2.82 16 27 N -0.52 -14.78 10.36 -195.85 -2.03 -16.81 16 28 C 0.10 2.77 10.88 84.67 0.92 3.69 16 29 H 0.28 14.30 8.31 -92.71 -0.77 13.53 16 30 H 0.39 19.96 7.90 -92.71 -0.73 19.23 16 31 H 0.10 3.33 5.70 -2.39 -0.01 3.31 16 32 H 0.07 2.19 7.99 -2.39 -0.02 2.17 16 33 H 0.04 1.07 8.12 -2.39 -0.02 1.05 16 34 H 0.05 2.13 6.59 -2.39 -0.02 2.11 16 35 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.11 1.96 6.01 -2.39 -0.01 1.94 16 37 H 0.16 1.78 7.95 -2.91 -0.02 1.76 16 38 H 0.17 1.18 8.06 -2.91 -0.02 1.15 16 39 H 0.16 1.64 8.06 -2.91 -0.02 1.61 16 40 H 0.16 3.39 8.06 -2.91 -0.02 3.36 16 41 H 0.11 1.90 5.92 -2.39 -0.01 1.88 16 42 H 0.07 1.18 7.97 -2.38 -0.02 1.16 16 43 H 0.15 2.63 7.83 -2.91 -0.02 2.61 16 44 H 0.16 2.38 8.06 -2.91 -0.02 2.35 16 45 H 0.17 3.07 8.06 -2.91 -0.02 3.05 16 46 H 0.16 3.85 8.06 -2.91 -0.02 3.83 16 Total: -1.00 -81.33 388.10 0.88 -80.44 By element: Atomic # 1 Polarization: 38.90 SS G_CDS: 0.28 Total: 39.17 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: 7.43 Total: 8.45 kcal Atomic # 7 Polarization: -130.12 SS G_CDS: -8.81 Total: -138.92 kcal Atomic # 8 Polarization: -35.79 SS G_CDS: -0.05 Total: -35.83 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Total: -81.33 0.88 -80.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430338374.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.544 kcal (2) G-P(sol) polarization free energy of solvation -81.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds