Wall clock time and date at job start Tue Mar 31 2020 23:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38376 * 119.92763 * 2 1 4 4 C 1.38326 * 120.27785 * 179.72394 * 3 2 1 5 5 C 1.37998 * 120.13800 * 0.54663 * 4 3 2 6 6 C 1.39498 * 119.86257 * 359.72844 * 5 4 3 7 7 C 1.47937 * 120.13975 * 179.97438 * 6 5 4 8 8 N 1.31781 * 126.63210 * 164.70861 * 7 6 5 9 9 N 1.28862 * 109.78140 * 179.85536 * 8 7 6 10 10 C 1.29930 * 109.87775 * 0.47754 * 9 8 7 11 11 N 1.36006 * 126.63879 * 345.01948 * 7 6 5 12 12 C 1.46212 * 129.01559 * 359.86120 * 11 7 6 13 13 C 1.53337 * 108.68897 * 197.05247 * 12 11 7 14 14 H 1.09001 * 109.45017 * 69.75001 * 13 12 11 15 15 C 1.50704 * 109.42061 * 189.67564 * 13 12 11 16 16 O 1.21296 * 120.00098 * 7.29128 * 15 13 12 17 17 N 1.34777 * 119.99868 * 187.28358 * 15 13 12 18 18 C 1.46497 * 119.99699 * 183.37025 * 17 15 13 19 19 C 1.37092 * 119.99889 * 3.37453 * 17 15 13 20 20 H 1.08002 * 120.00280 * 8.19589 * 19 17 15 21 21 C 1.38949 * 119.99901 * 188.20310 * 19 17 15 22 22 N 1.31422 * 119.99931 * 6.40565 * 21 19 17 23 23 Si 1.86801 * 120.00179 * 186.40570 * 21 19 17 24 24 H 1.48501 * 109.46646 * 60.00005 * 23 21 19 25 25 H 1.48497 * 109.47189 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47251 * 299.99767 * 23 21 19 27 27 C 1.53128 * 109.60715 * 309.70361 * 13 12 11 28 28 C 1.50832 * 128.57516 * 179.58983 * 10 9 8 29 29 C 1.37954 * 119.93085 * 180.27063 * 2 1 3 30 30 H 1.09001 * 109.47564 * 269.72763 * 1 2 3 31 31 H 1.08997 * 109.47418 * 149.73131 * 1 2 3 32 32 H 1.08996 * 109.47232 * 29.73134 * 1 2 3 33 33 H 1.07997 * 119.86076 * 359.97438 * 3 2 1 34 34 H 1.07992 * 119.92937 * 180.25603 * 4 3 2 35 35 H 1.08001 * 120.07113 * 179.75170 * 5 4 3 36 36 H 1.09001 * 109.59483 * 316.80679 * 12 11 7 37 37 H 1.08997 * 109.59985 * 77.27857 * 12 11 7 38 38 H 1.09000 * 109.47713 * 354.82984 * 18 17 15 39 39 H 1.08996 * 109.47323 * 114.83336 * 18 17 15 40 40 H 1.09006 * 109.47188 * 234.83025 * 18 17 15 41 41 H 0.96995 * 119.99980 * 180.02562 * 22 21 19 42 42 H 1.08997 * 109.48817 * 309.64624 * 27 13 12 43 43 H 1.08992 * 109.49175 * 189.57225 * 27 13 12 44 44 H 1.08997 * 109.73452 * 315.64669 * 28 10 9 45 45 H 1.09001 * 109.73079 * 76.28602 * 28 10 9 46 46 H 1.08003 * 120.07178 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1992 0.0000 4 6 3.5806 1.2077 0.0058 5 6 4.2808 0.0186 0.0002 6 6 3.5907 -1.1938 -0.0056 7 6 4.3351 -2.4722 -0.0122 8 7 3.8494 -3.6664 0.2610 9 7 4.7806 -4.5507 0.1548 10 6 5.8984 -3.9775 -0.1772 11 7 5.6545 -2.6417 -0.2956 12 6 6.6540 -1.6386 -0.6598 13 6 7.8591 -2.3505 -1.2859 14 1 7.5793 -2.7477 -2.2617 15 6 8.9913 -1.3694 -1.4494 16 8 8.8993 -0.2538 -0.9823 17 7 10.1061 -1.7317 -2.1146 18 6 11.2360 -0.8041 -2.2101 19 6 10.1827 -2.9681 -2.7017 20 1 9.3077 -3.5996 -2.7470 21 6 11.3861 -3.4090 -3.2385 22 7 12.4789 -2.6980 -3.0733 23 14 11.4506 -5.0122 -4.1950 24 1 10.5447 -4.9252 -5.3685 25 1 12.8398 -5.2559 -4.6597 26 1 11.0184 -6.1297 -3.3178 27 6 8.3067 -3.4988 -0.3772 28 6 7.2488 -4.6102 -0.4037 29 6 2.1953 -1.1955 -0.0056 30 1 -0.3634 -0.0049 1.0276 31 1 -0.3634 -0.8875 -0.5180 32 1 -0.3633 0.8923 -0.5096 33 1 1.6539 2.1325 -0.0004 34 1 4.1136 2.1469 0.0099 35 1 5.3607 0.0265 0.0006 36 1 6.2264 -0.9413 -1.3803 37 1 6.9711 -1.0979 0.2319 38 1 10.9592 0.1527 -1.7673 39 1 12.0917 -1.2175 -1.6762 40 1 11.4980 -0.6572 -3.2579 41 1 13.3189 -3.0055 -3.4484 42 1 8.4228 -3.1315 0.6425 43 1 9.2583 -3.8940 -0.7324 44 1 7.4539 -5.3326 0.3863 45 1 7.2632 -5.1100 -1.3722 46 1 1.6553 -2.1309 -0.0105 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449820370.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:50 Heat of formation + Delta-G solvation = 71.723896 kcal Electronic energy + Delta-G solvation = -29572.581397 eV Core-core repulsion = 25656.497896 eV Total energy + Delta-G solvation = -3916.083501 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.00705 -39.34647 -39.21776 -36.41016 -35.04953 -34.14161 -32.60064 -31.86777 -31.52590 -30.53278 -28.41700 -27.14040 -26.79698 -25.19584 -23.96042 -23.59317 -22.84066 -21.43426 -20.75130 -19.75162 -19.07794 -17.35282 -16.95620 -16.57899 -16.45444 -15.83962 -15.33748 -15.18191 -14.68778 -14.47034 -14.35556 -14.22709 -13.93536 -13.80293 -13.63220 -13.54341 -13.09394 -12.97379 -12.43679 -12.38640 -12.11799 -11.92317 -11.80620 -11.63812 -11.51621 -11.31550 -11.24254 -11.14000 -10.84524 -10.81176 -10.62995 -10.55433 -10.47244 -10.18641 -9.94808 -9.63928 -9.31431 -8.89150 -8.63555 -8.26207 -8.10873 -6.48690 -4.13017 0.76604 1.23452 2.15959 2.54039 2.96848 2.97778 3.07531 3.07898 3.58660 3.70733 3.87297 4.08522 4.37218 4.44007 4.60092 4.70892 4.79589 4.83151 4.95613 4.97749 5.07846 5.12394 5.18058 5.33260 5.40263 5.41268 5.45809 5.55788 5.59003 5.68505 5.78180 5.86122 5.89462 5.97934 6.00438 6.10061 6.21266 6.29249 6.35471 6.41089 6.42382 6.51576 6.70493 6.78011 6.99440 7.03510 7.17098 7.31530 7.53772 8.14959 8.83124 8.83799 9.26625 9.65819 10.42708 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016562 B = 0.003078 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.187609 B = 9095.537424 C =10210.191566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.089 4.089 3 C -0.111 4.111 4 C -0.111 4.111 5 C -0.117 4.117 6 C -0.007 4.007 7 C 0.211 3.789 8 N -0.287 5.287 9 N -0.296 5.296 10 C 0.191 3.809 11 N -0.463 5.463 12 C 0.121 3.879 13 C -0.100 4.100 14 H 0.096 0.904 15 C 0.452 3.548 16 O -0.616 6.616 17 N -0.431 5.431 18 C 0.117 3.883 19 C -0.339 4.339 20 H 0.103 0.897 21 C 0.039 3.961 22 N -0.868 5.868 23 Si 0.924 3.076 24 H -0.272 1.272 25 H -0.281 1.281 26 H -0.269 1.269 27 C -0.121 4.121 28 C -0.033 4.033 29 C -0.079 4.079 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.124 0.876 34 H 0.130 0.870 35 H 0.133 0.867 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.038 0.962 39 H 0.079 0.921 40 H 0.054 0.946 41 H 0.271 0.729 42 H 0.067 0.933 43 H 0.115 0.885 44 H 0.101 0.899 45 H 0.098 0.902 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.482 3.212 3.576 14.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.089 4.089 3 C -0.130 4.130 4 C -0.129 4.129 5 C -0.137 4.137 6 C -0.009 4.009 7 C -0.053 4.053 8 N -0.129 5.129 9 N -0.137 5.137 10 C -0.076 4.076 11 N -0.152 5.152 12 C -0.002 4.002 13 C -0.122 4.122 14 H 0.114 0.886 15 C 0.239 3.761 16 O -0.505 6.505 17 N -0.146 5.146 18 C -0.026 4.026 19 C -0.467 4.467 20 H 0.120 0.880 21 C -0.167 4.167 22 N -0.506 5.506 23 Si 0.750 3.250 24 H -0.197 1.197 25 H -0.206 1.206 26 H -0.194 1.194 27 C -0.160 4.160 28 C -0.073 4.073 29 C -0.099 4.099 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.142 0.858 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.116 0.884 37 H 0.120 0.880 38 H 0.056 0.944 39 H 0.097 0.903 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.133 0.867 44 H 0.119 0.881 45 H 0.116 0.884 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -14.192 2.639 4.073 14.998 hybrid contribution 1.230 0.150 -1.023 1.607 sum -12.961 2.788 3.050 13.604 Atomic orbital electron populations 1.20785 0.90763 1.02916 1.02491 1.19846 0.96313 0.92685 1.00062 1.21176 0.94240 0.97585 1.00004 1.21054 0.94156 0.97879 0.99775 1.21558 1.00846 0.91570 0.99700 1.17451 0.92544 0.87675 1.03250 1.22572 0.81913 0.96053 1.04789 1.74678 1.23275 0.95580 1.19324 1.73967 0.96444 1.24545 1.18716 1.25039 0.99014 0.81030 1.02538 1.46408 1.09080 1.09282 1.50458 1.22073 0.86750 0.89016 1.02321 1.21279 0.93534 0.96665 1.00678 0.88551 1.19307 0.84758 0.87977 0.84078 1.90537 1.82193 1.22303 1.55487 1.43640 1.12745 1.14530 1.43700 1.21617 0.88582 0.90627 1.01725 1.19716 0.97382 0.93467 1.36125 0.87967 1.25339 0.94758 0.99401 0.97157 1.70152 0.99662 1.38020 1.42723 0.86022 0.77862 0.81111 0.79986 1.19700 1.20628 1.19363 1.21767 1.00463 0.93862 0.99858 1.20337 0.84742 0.97775 1.04398 1.21041 0.92109 0.98442 0.98294 0.91023 0.91311 0.91462 0.85764 0.85253 0.84979 0.88414 0.87972 0.94353 0.90278 0.92720 0.91829 0.91392 0.86705 0.88084 0.88394 0.84738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.01 36.00 0.36 -0.48 16 2 C -0.09 -0.92 5.87 -104.68 -0.61 -1.54 16 3 C -0.11 -1.09 9.69 -39.50 -0.38 -1.48 16 4 C -0.11 -1.21 10.03 -39.64 -0.40 -1.60 16 5 C -0.12 -1.53 9.02 -39.20 -0.35 -1.88 16 6 C -0.01 -0.10 5.87 -104.97 -0.62 -0.71 16 7 C 0.21 3.53 7.74 -154.76 -1.20 2.33 16 8 N -0.29 -5.27 12.03 32.40 0.39 -4.88 16 9 N -0.30 -5.48 12.18 32.89 0.40 -5.08 16 10 C 0.19 3.18 7.77 -154.65 -1.20 1.98 16 11 N -0.46 -7.61 3.16 -111.14 -0.35 -7.96 16 12 C 0.12 1.94 3.90 -4.02 -0.02 1.92 16 13 C -0.10 -1.74 1.69 -91.53 -0.15 -1.89 16 14 H 0.10 1.67 7.23 -51.93 -0.38 1.29 16 15 C 0.45 9.72 6.95 -10.98 -0.08 9.64 16 16 O -0.62 -14.54 15.12 5.54 0.08 -14.45 16 17 N -0.43 -9.92 3.02 -122.19 -0.37 -10.29 16 18 C 0.12 2.71 8.88 59.85 0.53 3.25 16 19 C -0.34 -7.63 7.82 -14.94 -0.12 -7.75 16 20 H 0.10 2.11 5.55 -52.49 -0.29 1.82 16 21 C 0.04 0.89 5.40 -17.46 -0.09 0.80 16 22 N -0.87 -20.80 9.64 55.50 0.53 -20.27 16 23 Si 0.92 17.83 29.56 -169.99 -5.02 12.80 16 24 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 25 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 26 H -0.27 -5.03 7.11 56.52 0.40 -4.62 16 27 C -0.12 -1.90 4.85 -26.43 -0.13 -2.03 16 28 C -0.03 -0.46 6.34 -27.58 -0.17 -0.64 16 29 C -0.08 -1.00 9.35 -39.20 -0.37 -1.36 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 32 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 33 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 35 H 0.13 1.77 4.80 -52.49 -0.25 1.51 16 36 H 0.10 1.52 7.02 -51.93 -0.36 1.15 16 37 H 0.10 1.67 7.14 -51.93 -0.37 1.30 16 38 H 0.04 0.87 6.91 -51.93 -0.36 0.51 16 39 H 0.08 1.90 6.70 -51.93 -0.35 1.55 16 40 H 0.05 1.29 7.46 -51.93 -0.39 0.91 16 41 H 0.27 6.21 8.31 -40.82 -0.34 5.87 16 42 H 0.07 1.07 8.12 -51.93 -0.42 0.64 16 43 H 0.11 1.95 6.02 -51.93 -0.31 1.63 16 44 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 45 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 46 H 0.13 1.67 7.95 -52.48 -0.42 1.25 16 LS Contribution 367.16 15.07 5.53 5.53 Total: -1.00 -28.43 367.16 -9.79 -38.23 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -5.99 Total: 7.83 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -5.00 Total: -1.46 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: 0.60 Total: -48.47 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: 0.08 Total: -14.45 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.02 Total: 12.80 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -28.43 -9.79 -38.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449820370.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.950 kcal (2) G-P(sol) polarization free energy of solvation -28.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds