Wall clock time and date at job start Tue Mar 31 2020 23:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38362 * 119.93446 * 2 1 4 4 C 1.38334 * 120.28542 * 180.02562 * 3 2 1 5 5 C 1.37993 * 120.13463 * 359.97438 * 4 3 2 6 6 C 1.39502 * 119.86302 * 0.27902 * 5 4 3 7 7 C 1.47939 * 120.14173 * 179.74570 * 6 5 4 8 8 N 1.31779 * 126.63365 * 194.68655 * 7 6 5 9 9 N 1.28870 * 109.78002 * 179.77806 * 8 7 6 10 10 C 1.29941 * 109.87711 * 0.41968 * 9 8 7 11 11 N 1.36006 * 126.63706 * 14.99691 * 7 6 5 12 12 C 1.46213 * 129.01872 * 0.16718 * 11 7 6 13 13 C 1.53331 * 108.69072 * 162.94004 * 12 11 7 14 14 H 1.08995 * 109.45462 * 290.27755 * 13 12 11 15 15 C 1.50703 * 109.44544 * 170.35352 * 13 12 11 16 16 O 1.21283 * 120.00473 * 0.02562 * 15 13 12 17 17 N 1.34783 * 119.99521 * 180.02562 * 15 13 12 18 18 C 1.46496 * 120.00348 * 359.97438 * 17 15 13 19 19 C 1.37096 * 119.99631 * 180.02562 * 17 15 13 20 20 H 1.07999 * 120.00268 * 23.41760 * 19 17 15 21 21 C 1.38950 * 120.00037 * 203.41722 * 19 17 15 22 22 N 1.31413 * 119.99658 * 10.66846 * 21 19 17 23 23 Si 1.86797 * 120.00305 * 190.66603 * 21 19 17 24 24 H 1.48502 * 109.47057 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.47037 * 120.00109 * 23 21 19 26 26 H 1.48497 * 109.47338 * 240.00220 * 23 21 19 27 27 C 1.53129 * 109.59963 * 50.31782 * 13 12 11 28 28 C 1.50820 * 128.56920 * 179.88748 * 10 9 8 29 29 C 1.37961 * 119.92748 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.47475 * 89.99856 * 1 2 3 31 31 H 1.09005 * 109.47573 * 210.00370 * 1 2 3 32 32 H 1.09011 * 109.46985 * 329.99999 * 1 2 3 33 33 H 1.08005 * 119.86018 * 0.02562 * 3 2 1 34 34 H 1.07992 * 119.92947 * 180.02562 * 4 3 2 35 35 H 1.08001 * 120.07049 * 179.97438 * 5 4 3 36 36 H 1.08994 * 109.60152 * 282.70870 * 12 11 7 37 37 H 1.09002 * 109.59689 * 43.18434 * 12 11 7 38 38 H 1.09005 * 109.46763 * 93.56992 * 18 17 15 39 39 H 1.08994 * 109.47647 * 213.57891 * 18 17 15 40 40 H 1.09000 * 109.47160 * 333.57973 * 18 17 15 41 41 H 0.97000 * 120.00109 * 179.97438 * 22 21 19 42 42 H 1.09007 * 109.49346 * 50.34487 * 27 13 12 43 43 H 1.08993 * 109.49548 * 170.39816 * 27 13 12 44 44 H 1.09000 * 109.73640 * 44.39628 * 28 10 9 45 45 H 1.09001 * 109.73647 * 283.69924 * 28 10 9 46 46 H 1.08001 * 120.06830 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1974 1.1990 0.0000 4 6 3.5807 1.2075 -0.0005 5 6 4.2808 0.0184 -0.0005 6 6 3.5906 -1.1940 -0.0059 7 6 4.3350 -2.4725 -0.0116 8 7 3.8465 -3.6655 -0.2850 9 7 4.7804 -4.5493 -0.1988 10 6 5.8985 -3.9793 0.1382 11 7 5.6543 -2.6447 0.2700 12 6 6.6539 -1.6453 0.6441 13 6 7.8590 -2.3634 1.2631 14 1 7.5791 -2.7707 2.2346 15 6 8.9913 -1.3843 1.4373 16 8 8.8501 -0.2277 1.1010 17 7 10.1610 -1.7942 1.9667 18 6 10.3315 -3.1912 2.3735 19 6 11.1910 -0.9034 2.1257 20 1 10.9841 0.1542 2.1965 21 6 12.5010 -1.3613 2.1957 22 7 12.7763 -2.6123 1.9023 23 14 13.8708 -0.1986 2.7066 24 1 13.3023 1.1453 2.9823 25 1 14.5294 -0.7179 3.9322 26 1 14.8696 -0.0990 1.6123 27 6 8.3067 -3.5023 0.3426 28 6 7.2488 -4.6141 0.3577 29 6 2.1952 -1.1956 -0.0005 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3633 0.8901 0.5139 33 1 1.6540 2.1324 0.0004 34 1 4.1138 2.1467 -0.0001 35 1 5.3607 0.0262 -0.0014 36 1 6.9711 -1.0959 -0.2421 37 1 6.2263 -0.9552 1.3715 38 1 10.7774 -3.7561 1.5548 39 1 10.9838 -3.2388 3.2454 40 1 9.3601 -3.6182 2.6227 41 1 13.6908 -2.9319 1.9508 42 1 8.4228 -3.1246 -0.6733 43 1 9.2586 -3.9008 0.6935 44 1 7.4539 -5.3281 -0.4400 45 1 7.2640 -5.1233 1.3213 46 1 1.6552 -2.1309 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449820381.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:52 Heat of formation + Delta-G solvation = 58.203376 kcal Electronic energy + Delta-G solvation = -29438.438410 eV Core-core repulsion = 25521.768616 eV Total energy + Delta-G solvation = -3916.669795 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.31599 -40.93276 -40.24188 -37.85405 -36.77529 -35.31652 -33.85236 -33.41211 -32.74186 -31.76644 -29.66934 -28.35021 -27.88969 -26.94085 -25.47847 -24.88995 -24.12645 -22.46978 -21.99964 -21.24879 -20.24305 -18.96321 -18.50398 -17.81063 -17.52782 -17.31124 -16.52255 -16.45732 -16.26570 -15.99799 -15.91325 -15.55748 -15.13877 -14.91436 -14.72845 -14.65445 -14.56901 -14.02286 -13.70745 -13.54670 -13.41591 -13.10336 -13.07260 -13.03515 -12.94501 -12.78312 -12.68131 -12.40922 -12.25269 -12.19944 -12.14981 -12.11353 -11.78158 -11.48016 -11.28107 -11.00175 -10.76972 -10.40425 -9.78014 -9.71059 -9.36468 -8.34924 -6.01005 -0.26275 0.33674 0.97056 1.23249 1.34913 1.42971 1.54811 1.71208 1.91185 2.25444 2.74607 2.81051 2.99566 3.07545 3.14936 3.34070 3.54805 3.59526 3.74593 3.88687 3.95396 4.04056 4.12864 4.18630 4.20594 4.30277 4.35678 4.42239 4.55334 4.61432 4.68330 4.70801 4.84845 4.87761 4.88883 4.90255 4.96510 5.01461 5.02288 5.11173 5.27072 5.38688 5.43301 5.44571 5.44998 5.56134 5.72141 5.93790 6.06592 6.42940 7.12688 7.41558 7.51799 7.94203 8.66142 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016613 B = 0.002892 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.972101 B = 9678.316550 C =11198.956245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.087 4.087 3 C -0.102 4.102 4 C -0.114 4.114 5 C -0.130 4.130 6 C -0.035 4.035 7 C 0.216 3.784 8 N -0.314 5.314 9 N -0.320 5.320 10 C 0.187 3.813 11 N -0.468 5.468 12 C 0.135 3.865 13 C -0.100 4.100 14 H 0.114 0.886 15 C 0.448 3.552 16 O -0.628 6.628 17 N -0.451 5.451 18 C 0.114 3.886 19 C -0.342 4.342 20 H 0.073 0.927 21 C 0.003 3.997 22 N -0.890 5.890 23 Si 0.985 3.015 24 H -0.275 1.275 25 H -0.267 1.267 26 H -0.277 1.277 27 C -0.123 4.123 28 C -0.022 4.022 29 C -0.088 4.088 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.158 0.842 34 H 0.148 0.852 35 H 0.121 0.879 36 H 0.091 0.909 37 H 0.103 0.897 38 H 0.062 0.938 39 H 0.050 0.950 40 H 0.071 0.929 41 H 0.274 0.726 42 H 0.063 0.937 43 H 0.111 0.889 44 H 0.125 0.875 45 H 0.124 0.876 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.420 0.814 -1.137 16.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.087 4.087 3 C -0.120 4.120 4 C -0.131 4.131 5 C -0.150 4.150 6 C -0.038 4.038 7 C -0.048 4.048 8 N -0.155 5.155 9 N -0.159 5.159 10 C -0.081 4.081 11 N -0.158 5.158 12 C 0.013 3.987 13 C -0.122 4.122 14 H 0.132 0.868 15 C 0.237 3.763 16 O -0.516 6.516 17 N -0.168 5.168 18 C -0.029 4.029 19 C -0.470 4.470 20 H 0.091 0.909 21 C -0.200 4.200 22 N -0.529 5.529 23 Si 0.809 3.191 24 H -0.199 1.199 25 H -0.192 1.192 26 H -0.203 1.203 27 C -0.162 4.162 28 C -0.061 4.061 29 C -0.108 4.108 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.176 0.824 34 H 0.166 0.834 35 H 0.139 0.861 36 H 0.109 0.891 37 H 0.121 0.879 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.129 0.871 44 H 0.143 0.857 45 H 0.142 0.858 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -17.245 0.104 -1.648 17.324 hybrid contribution 2.074 1.397 0.451 2.541 sum -15.171 1.500 -1.197 15.292 Atomic orbital electron populations 1.20863 0.88406 1.04057 1.03515 1.20217 0.97994 0.91981 0.98483 1.21588 0.93832 0.98801 0.97785 1.21353 0.95015 0.97799 0.98979 1.21560 1.00485 0.92180 1.00769 1.17609 0.93330 0.87099 1.05760 1.23029 0.81931 0.96489 1.03387 1.74628 1.23695 0.96244 1.20918 1.73904 0.97038 1.25196 1.19803 1.25553 0.99667 0.81096 1.01753 1.46431 1.09121 1.09412 1.50790 1.21818 0.86228 0.88824 1.01833 1.21352 0.92503 0.96260 1.02046 0.86785 1.20249 0.85220 0.88795 0.82059 1.90503 1.83447 1.21276 1.56363 1.43728 1.10893 1.10287 1.51921 1.21707 0.99377 0.81219 1.00567 1.19611 0.86001 0.90769 1.50624 0.90943 1.26003 0.99781 0.98283 0.95933 1.70020 1.21369 1.15811 1.45670 0.84994 0.77640 0.78235 0.78225 1.19919 1.19245 1.20287 1.21956 1.00802 0.93902 0.99502 1.20456 0.82066 0.96883 1.06744 1.21146 0.91494 0.99388 0.98777 0.89927 0.91069 0.89497 0.82405 0.83380 0.86113 0.89069 0.87926 0.91921 0.93159 0.91023 0.91601 0.91816 0.87096 0.85742 0.85835 0.85137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 10.01 71.23 0.71 -0.60 16 2 C -0.09 -1.59 5.87 -19.90 -0.12 -1.71 16 3 C -0.10 -1.70 9.69 22.32 0.22 -1.49 16 4 C -0.11 -2.30 10.03 22.23 0.22 -2.08 16 5 C -0.13 -3.37 9.02 22.52 0.20 -3.17 16 6 C -0.04 -1.00 5.87 -20.09 -0.12 -1.12 16 7 C 0.22 7.08 7.74 136.60 1.06 8.14 16 8 N -0.31 -11.27 12.03 -51.40 -0.62 -11.89 16 9 N -0.32 -11.20 12.18 -49.86 -0.61 -11.81 16 10 C 0.19 5.67 7.77 137.92 1.07 6.74 16 11 N -0.47 -14.61 3.16 -505.54 -1.60 -16.21 16 12 C 0.14 4.21 3.82 86.54 0.33 4.54 16 13 C -0.10 -3.16 1.73 -11.39 -0.02 -3.18 16 14 H 0.11 3.19 7.39 -2.39 -0.02 3.17 16 15 C 0.45 19.54 7.03 87.66 0.62 20.16 16 16 O -0.63 -32.04 15.53 -3.04 -0.05 -32.08 16 17 N -0.45 -21.01 3.02 -658.90 -1.99 -23.00 16 18 C 0.11 4.37 7.04 127.77 0.90 5.27 16 19 C -0.34 -18.10 9.27 84.04 0.78 -17.32 16 20 H 0.07 4.14 7.42 -2.91 -0.02 4.12 16 21 C 0.00 0.13 5.14 84.93 0.44 0.57 16 22 N -0.89 -43.67 10.62 21.66 0.23 -43.44 16 23 Si 0.98 40.27 29.57 68.60 2.03 42.30 16 24 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 25 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 26 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 27 C -0.12 -3.36 4.83 30.79 0.15 -3.21 16 28 C -0.02 -0.51 6.34 30.04 0.19 -0.32 16 29 C -0.09 -2.13 9.35 22.52 0.21 -1.92 16 30 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.07 0.82 8.08 -2.38 -0.02 0.80 16 32 H 0.09 0.71 8.09 -2.38 -0.02 0.69 16 33 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 34 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 35 H 0.12 3.33 4.81 -2.91 -0.01 3.31 16 36 H 0.09 3.05 7.25 -2.39 -0.02 3.03 16 37 H 0.10 3.14 7.03 -2.39 -0.02 3.12 16 38 H 0.06 2.47 6.32 -2.38 -0.02 2.45 16 39 H 0.05 2.10 7.20 -2.39 -0.02 2.08 16 40 H 0.07 2.10 5.84 -2.39 -0.01 2.09 16 41 H 0.27 12.65 8.31 -92.71 -0.77 11.88 16 42 H 0.06 1.88 8.12 -2.38 -0.02 1.86 16 43 H 0.11 3.06 4.49 -2.39 -0.01 3.05 16 44 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 45 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 46 H 0.13 3.17 7.95 -2.91 -0.02 3.14 16 Total: -1.00 -68.82 366.82 5.26 -63.56 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: 1.02 Total: 23.27 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: 6.84 Total: 9.31 kcal Atomic # 7 Polarization: -101.77 SS G_CDS: -4.58 Total: -106.35 kcal Atomic # 8 Polarization: -32.04 SS G_CDS: -0.05 Total: -32.08 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 2.03 Total: 42.30 kcal Total: -68.82 5.26 -63.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449820381.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.760 kcal (2) G-P(sol) polarization free energy of solvation -68.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds