Wall clock time and date at job start Tue Mar 31 2020 23:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 120.00305 * 2 1 4 4 H 1.48499 * 109.46944 * 239.99978 * 3 2 1 5 5 H 1.48503 * 109.46577 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47344 * 119.99238 * 3 2 1 7 7 C 1.37877 * 119.99977 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00147 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99960 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47243 * 179.97438 * 9 7 2 11 11 C 1.53037 * 109.46008 * 184.99867 * 10 9 7 12 12 C 1.53189 * 109.31329 * 178.62528 * 11 10 9 13 13 N 1.46931 * 108.77305 * 54.63957 * 12 11 10 14 14 C 1.34777 * 120.63153 * 126.37178 * 13 12 11 15 15 O 1.21513 * 119.99769 * 0.27389 * 14 13 12 16 16 C 1.48176 * 119.99836 * 180.27649 * 14 13 12 17 17 C 1.39129 * 119.69413 * 158.55096 * 16 14 13 18 18 C 1.39277 * 118.97869 * 180.25403 * 17 16 14 19 19 N 1.39959 * 120.82478 * 179.72850 * 18 17 16 20 20 C 1.37150 * 126.48720 * 179.97438 * 19 18 17 21 21 C 1.34627 * 106.83176 * 179.97438 * 20 19 18 22 22 N 1.34152 * 108.21277 * 359.97438 * 21 20 19 23 23 C 1.30491 * 109.36382 * 359.72638 * 22 21 20 24 24 C 1.39268 * 118.35232 * 359.50458 * 18 17 16 25 25 C 1.38340 * 119.28150 * 0.47961 * 24 18 17 26 26 N 1.31595 * 120.97481 * 359.76341 * 25 24 18 27 27 C 1.46931 * 118.73420 * 306.63951 * 13 12 11 28 28 C 1.52753 * 109.00824 * 53.31364 * 27 13 12 29 29 H 0.97003 * 119.99830 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47131 * 59.99859 * 9 7 2 31 31 H 1.09004 * 109.47317 * 300.00075 * 9 7 2 32 32 H 1.09000 * 109.45939 * 304.97197 * 10 9 7 33 33 H 1.09008 * 109.49967 * 58.67687 * 11 10 9 34 34 H 1.09002 * 109.52808 * 298.59689 * 11 10 9 35 35 H 1.09003 * 109.59098 * 294.85323 * 12 11 10 36 36 H 1.09004 * 109.70834 * 174.49248 * 12 11 10 37 37 H 1.08004 * 120.51058 * 359.97438 * 17 16 14 38 38 H 1.07997 * 126.58394 * 359.95994 * 20 19 18 39 39 H 1.07992 * 125.89050 * 180.02562 * 21 20 19 40 40 H 1.08002 * 125.72512 * 180.28841 * 23 22 21 41 41 H 1.08001 * 120.35946 * 180.24068 * 24 18 17 42 42 H 1.08001 * 119.51330 * 179.78557 * 25 24 18 43 43 H 1.08996 * 109.57945 * 173.14551 * 27 13 12 44 44 H 1.08997 * 109.58602 * 293.56738 * 27 13 12 45 45 H 1.09000 * 109.56920 * 185.55125 * 28 27 13 46 46 H 1.09003 * 109.36103 * 65.49370 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4839 -4.9837 -0.1252 12 6 2.4843 -6.1434 -0.1594 13 7 3.3501 -6.0561 1.0245 14 6 3.4911 -7.1109 1.8514 15 8 2.9030 -8.1484 1.6184 16 6 4.3631 -7.0054 3.0448 17 6 4.1784 -7.8779 4.1126 18 6 5.0030 -7.7621 5.2291 19 7 4.8475 -8.6157 6.3272 20 6 5.5905 -8.6053 7.4800 21 6 5.1069 -9.5867 8.2644 22 7 4.0961 -10.1832 7.6146 23 6 3.9267 -9.6070 6.4560 24 6 5.9893 -6.7788 5.2236 25 6 6.1113 -5.9489 4.1235 26 7 5.3137 -6.0794 3.0850 27 6 4.0546 -4.7949 1.2929 28 6 3.0410 -3.6522 1.3077 29 1 -0.4850 0.8401 -0.0004 30 1 0.6247 -2.5571 -0.8897 31 1 0.6240 -2.5567 0.8903 32 1 2.9289 -3.5553 -0.8416 33 1 0.8990 -4.9806 -1.0450 34 1 0.8176 -5.1031 0.7292 35 1 3.0916 -6.0757 -1.0620 36 1 1.9476 -7.0921 -0.1504 37 1 3.4045 -8.6306 4.0783 38 1 6.4070 -7.9380 7.7135 39 1 5.4695 -9.8481 9.2475 40 1 3.1818 -9.8750 5.7214 41 1 6.6492 -6.6629 6.0707 42 1 6.8725 -5.1828 4.1168 43 1 4.5518 -4.8532 2.2611 44 1 4.7925 -4.6151 0.5111 45 1 3.5643 -2.7013 1.4078 46 1 2.3604 -3.7838 2.1489 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563185365.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:45 Heat of formation + Delta-G solvation = 77.618983 kcal Electronic energy + Delta-G solvation = -28680.396752 eV Core-core repulsion = 24764.568881 eV Total energy + Delta-G solvation = -3915.827871 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.86855 -41.09607 -39.42016 -37.41545 -35.47729 -34.01514 -32.43476 -31.97782 -31.21630 -30.48180 -29.93467 -28.13759 -25.67152 -24.75961 -24.18095 -22.82043 -22.40511 -21.51113 -21.31552 -20.37232 -19.38258 -18.40013 -17.41651 -16.63929 -16.31730 -16.30653 -16.15436 -15.81960 -15.37157 -15.03810 -14.75963 -14.55371 -14.38318 -14.08092 -13.99193 -13.81487 -13.59004 -13.23947 -12.95755 -12.80116 -12.49089 -12.26212 -11.83479 -11.67408 -11.19447 -11.01870 -10.82614 -10.72009 -10.65899 -10.52998 -10.40389 -10.16427 -9.87962 -9.81128 -9.61290 -9.42393 -9.09745 -9.01474 -8.90351 -8.40939 -8.35040 -6.01156 -4.03174 0.02303 0.29767 1.70926 1.97755 2.50899 2.65741 2.88288 3.30352 3.34457 3.35722 3.37078 3.75234 3.92390 4.01128 4.16055 4.31963 4.42596 4.43579 4.61091 4.88280 4.92538 5.04608 5.12934 5.20654 5.29584 5.34128 5.43023 5.49477 5.60627 5.69781 5.72346 5.76952 5.95757 6.04067 6.17061 6.32625 6.34707 6.40085 6.53813 6.61723 6.68054 6.96157 6.99708 7.11750 7.17799 7.46200 7.47302 7.65459 7.80439 7.98551 8.04246 8.41097 9.03154 9.60459 11.10076 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015642 B = 0.002391 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.629888 B =11708.405979 C =12531.435745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.516 4.516 8 H 0.055 0.945 9 C 0.028 3.972 10 C -0.083 4.083 11 C -0.129 4.129 12 C 0.109 3.891 13 N -0.576 5.576 14 C 0.565 3.435 15 O -0.542 6.542 16 C 0.122 3.878 17 C -0.133 4.133 18 C 0.177 3.823 19 N -0.416 5.416 20 C -0.053 4.053 21 C -0.018 4.018 22 N -0.481 5.481 23 C 0.199 3.801 24 C -0.171 4.171 25 C 0.125 3.875 26 N -0.449 5.449 27 C 0.072 3.928 28 C -0.120 4.120 29 H 0.260 0.740 30 H 0.015 0.985 31 H 0.014 0.986 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.156 0.844 38 H 0.181 0.819 39 H 0.178 0.822 40 H 0.213 0.787 41 H 0.148 0.852 42 H 0.177 0.823 43 H 0.132 0.868 44 H 0.066 0.934 45 H 0.084 0.916 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.161 -15.933 12.105 24.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.554 4.554 8 H 0.074 0.926 9 C -0.009 4.009 10 C -0.101 4.101 11 C -0.167 4.167 12 C -0.013 4.013 13 N -0.306 5.306 14 C 0.350 3.650 15 O -0.420 6.420 16 C -0.015 4.015 17 C -0.155 4.155 18 C 0.076 3.924 19 N -0.096 5.096 20 C -0.182 4.182 21 C -0.163 4.163 22 N -0.197 5.197 23 C -0.082 4.082 24 C -0.193 4.193 25 C -0.033 4.033 26 N -0.162 5.162 27 C -0.049 4.049 28 C -0.158 4.158 29 H 0.070 0.930 30 H 0.034 0.966 31 H 0.033 0.967 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.173 0.827 38 H 0.199 0.801 39 H 0.195 0.805 40 H 0.230 0.770 41 H 0.166 0.834 42 H 0.194 0.806 43 H 0.149 0.851 44 H 0.084 0.916 45 H 0.103 0.897 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 13.322 -16.439 11.511 24.088 hybrid contribution 0.814 1.319 0.440 1.612 sum 14.136 -15.120 11.951 23.901 Atomic orbital electron populations 1.69956 1.06050 1.26634 1.50863 1.25029 0.94806 0.99176 0.95498 0.86704 0.79606 0.83397 0.78553 1.20284 1.21390 1.20300 1.21197 0.92889 0.90944 1.50392 0.92637 1.19119 0.93603 0.91059 0.97123 1.21219 0.98016 0.94502 0.96382 1.22027 0.97528 0.94795 1.02341 1.21801 0.92670 1.00510 0.86286 1.48063 1.45076 1.12843 1.24597 1.17734 0.81238 0.84063 0.81920 1.90778 1.48381 1.29094 1.73726 1.21140 0.94374 0.91562 0.94465 1.21704 1.00726 1.01395 0.91714 1.17940 0.96235 0.91387 0.86842 1.43218 1.27253 1.26200 1.12923 1.22835 1.02363 1.05609 0.87355 1.22450 0.96573 0.96145 1.01123 1.70390 1.17740 1.26952 1.04667 1.25521 0.96011 0.88809 0.97864 1.22075 0.99047 0.96279 1.01893 1.22966 0.95875 0.96872 0.87580 1.67830 1.04171 1.17399 1.26797 1.22946 0.94884 0.81873 1.05244 1.21859 0.97707 0.97651 0.98590 0.93000 0.96642 0.96728 0.92309 0.90951 0.92083 0.91312 0.89521 0.82662 0.80143 0.80512 0.77010 0.83419 0.80610 0.85130 0.91595 0.89736 0.92814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.49 13.29 55.43 0.74 -25.75 16 2 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 3 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 7 C -0.52 -13.89 8.39 -34.44 -0.29 -14.17 16 8 H 0.06 1.43 7.05 -52.49 -0.37 1.06 16 9 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 10 C -0.08 -1.59 2.10 -90.58 -0.19 -1.78 16 11 C -0.13 -2.14 5.36 -26.61 -0.14 -2.29 16 12 C 0.11 1.60 6.44 -3.71 -0.02 1.58 16 13 N -0.58 -8.53 2.98 -174.02 -0.52 -9.04 16 14 C 0.56 8.32 7.62 -12.18 -0.09 8.23 16 15 O -0.54 -9.07 15.93 5.35 0.09 -8.98 16 16 C 0.12 1.46 6.46 -83.05 -0.54 0.93 16 17 C -0.13 -1.34 9.05 -38.86 -0.35 -1.69 16 18 C 0.18 1.51 6.67 -83.38 -0.56 0.95 16 19 N -0.42 -3.52 2.99 -61.91 -0.18 -3.71 16 20 C -0.05 -0.37 10.89 -16.45 -0.18 -0.55 16 21 C -0.02 -0.15 11.85 -17.82 -0.21 -0.36 16 22 N -0.48 -5.13 11.24 -14.47 -0.16 -5.29 16 23 C 0.20 1.83 11.95 -89.59 -1.07 0.76 16 24 C -0.17 -1.11 9.55 -39.16 -0.37 -1.48 16 25 C 0.13 0.90 11.17 -17.62 -0.20 0.70 16 26 N -0.45 -4.74 6.35 -9.87 -0.06 -4.80 16 27 C 0.07 1.03 5.96 -3.93 -0.02 1.01 16 28 C -0.12 -2.09 5.17 -26.84 -0.14 -2.22 16 29 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.07 1.16 8.14 -51.92 -0.42 0.74 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.09 1.27 7.00 -51.93 -0.36 0.91 16 37 H 0.16 1.45 6.64 -52.48 -0.35 1.11 16 38 H 0.18 0.64 7.23 -52.49 -0.38 0.26 16 39 H 0.18 0.98 8.06 -52.49 -0.42 0.55 16 40 H 0.21 1.42 7.15 -52.49 -0.38 1.04 16 41 H 0.15 0.52 6.94 -52.49 -0.36 0.15 16 42 H 0.18 0.69 8.06 -52.49 -0.42 0.27 16 43 H 0.13 1.71 3.97 -79.64 -0.32 1.39 16 44 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.08 1.56 6.91 -51.93 -0.36 1.20 16 46 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 374.63 15.07 5.65 5.65 Total: -1.00 -33.89 374.63 -10.32 -44.21 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -6.24 Total: -0.01 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -4.60 Total: -8.36 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: -0.19 Total: -48.60 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.09 Total: -8.98 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.89 -10.32 -44.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563185365.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.832 kcal (2) G-P(sol) polarization free energy of solvation -33.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds