Wall clock time and date at job start Tue Mar 31 2020 23:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 120.00305 * 2 1 4 4 H 1.48499 * 109.46944 * 239.99978 * 3 2 1 5 5 H 1.48503 * 109.46577 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47344 * 119.99238 * 3 2 1 7 7 C 1.37877 * 119.99977 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00147 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99960 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47243 * 179.97438 * 9 7 2 11 11 C 1.53037 * 109.46008 * 184.99867 * 10 9 7 12 12 C 1.53189 * 109.31329 * 178.62528 * 11 10 9 13 13 N 1.46931 * 108.77305 * 54.63957 * 12 11 10 14 14 C 1.34777 * 120.63153 * 126.37178 * 13 12 11 15 15 O 1.21513 * 119.99769 * 0.27389 * 14 13 12 16 16 C 1.48176 * 119.99836 * 180.27649 * 14 13 12 17 17 C 1.39129 * 119.69413 * 158.55096 * 16 14 13 18 18 C 1.39277 * 118.97869 * 180.25403 * 17 16 14 19 19 N 1.39959 * 120.82478 * 179.72850 * 18 17 16 20 20 C 1.37150 * 126.48720 * 179.97438 * 19 18 17 21 21 C 1.34627 * 106.83176 * 179.97438 * 20 19 18 22 22 N 1.34152 * 108.21277 * 359.97438 * 21 20 19 23 23 C 1.30491 * 109.36382 * 359.72638 * 22 21 20 24 24 C 1.39268 * 118.35232 * 359.50458 * 18 17 16 25 25 C 1.38340 * 119.28150 * 0.47961 * 24 18 17 26 26 N 1.31595 * 120.97481 * 359.76341 * 25 24 18 27 27 C 1.46931 * 118.73420 * 306.63951 * 13 12 11 28 28 C 1.52753 * 109.00824 * 53.31364 * 27 13 12 29 29 H 0.97003 * 119.99830 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47131 * 59.99859 * 9 7 2 31 31 H 1.09004 * 109.47317 * 300.00075 * 9 7 2 32 32 H 1.09000 * 109.45939 * 304.97197 * 10 9 7 33 33 H 1.09008 * 109.49967 * 58.67687 * 11 10 9 34 34 H 1.09002 * 109.52808 * 298.59689 * 11 10 9 35 35 H 1.09003 * 109.59098 * 294.85323 * 12 11 10 36 36 H 1.09004 * 109.70834 * 174.49248 * 12 11 10 37 37 H 1.08004 * 120.51058 * 359.97438 * 17 16 14 38 38 H 1.07997 * 126.58394 * 359.95994 * 20 19 18 39 39 H 1.07992 * 125.89050 * 180.02562 * 21 20 19 40 40 H 1.08002 * 125.72512 * 180.28841 * 23 22 21 41 41 H 1.08001 * 120.35946 * 180.24068 * 24 18 17 42 42 H 1.08001 * 119.51330 * 179.78557 * 25 24 18 43 43 H 1.08996 * 109.57945 * 173.14551 * 27 13 12 44 44 H 1.08997 * 109.58602 * 293.56738 * 27 13 12 45 45 H 1.09000 * 109.56920 * 185.55125 * 28 27 13 46 46 H 1.09003 * 109.36103 * 65.49370 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4839 -4.9837 -0.1252 12 6 2.4843 -6.1434 -0.1594 13 7 3.3501 -6.0561 1.0245 14 6 3.4911 -7.1109 1.8514 15 8 2.9030 -8.1484 1.6184 16 6 4.3631 -7.0054 3.0448 17 6 4.1784 -7.8779 4.1126 18 6 5.0030 -7.7621 5.2291 19 7 4.8475 -8.6157 6.3272 20 6 5.5905 -8.6053 7.4800 21 6 5.1069 -9.5867 8.2644 22 7 4.0961 -10.1832 7.6146 23 6 3.9267 -9.6070 6.4560 24 6 5.9893 -6.7788 5.2236 25 6 6.1113 -5.9489 4.1235 26 7 5.3137 -6.0794 3.0850 27 6 4.0546 -4.7949 1.2929 28 6 3.0410 -3.6522 1.3077 29 1 -0.4850 0.8401 -0.0004 30 1 0.6247 -2.5571 -0.8897 31 1 0.6240 -2.5567 0.8903 32 1 2.9289 -3.5553 -0.8416 33 1 0.8990 -4.9806 -1.0450 34 1 0.8176 -5.1031 0.7292 35 1 3.0916 -6.0757 -1.0620 36 1 1.9476 -7.0921 -0.1504 37 1 3.4045 -8.6306 4.0783 38 1 6.4070 -7.9380 7.7135 39 1 5.4695 -9.8481 9.2475 40 1 3.1818 -9.8750 5.7214 41 1 6.6492 -6.6629 6.0707 42 1 6.8725 -5.1828 4.1168 43 1 4.5518 -4.8532 2.2611 44 1 4.7925 -4.6151 0.5111 45 1 3.5643 -2.7013 1.4078 46 1 2.3604 -3.7838 2.1489 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563185365.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:44 Heat of formation + Delta-G solvation = 59.226843 kcal Electronic energy + Delta-G solvation = -28681.194295 eV Core-core repulsion = 24764.568881 eV Total energy + Delta-G solvation = -3916.625414 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.47449 -41.96171 -40.41241 -38.75228 -36.22328 -35.61143 -34.02835 -32.95402 -32.15274 -31.46734 -30.53382 -29.84872 -26.93706 -25.55261 -25.37160 -24.08969 -23.59623 -22.49053 -22.03780 -21.45153 -20.55676 -19.38970 -18.42907 -18.26082 -17.32165 -17.17905 -16.94162 -16.72321 -16.52819 -16.36713 -15.73973 -15.40665 -15.17466 -15.12083 -14.93958 -14.89971 -14.60168 -14.44215 -14.37330 -14.17914 -13.83284 -13.38109 -13.09326 -12.96682 -12.76329 -12.48821 -12.44379 -12.32186 -12.07995 -11.79340 -11.53403 -11.42007 -11.24672 -11.17976 -10.85700 -10.52615 -10.50800 -10.30421 -9.99325 -9.65249 -9.60924 -8.15113 -6.24858 -0.66341 -0.35899 1.08935 1.35560 1.42381 1.45075 1.52515 1.60474 1.87247 2.02678 2.43951 2.59191 2.90792 3.18361 3.28234 3.43187 3.60824 3.73605 3.76719 3.88121 4.02670 4.08379 4.12116 4.26924 4.34670 4.44626 4.45714 4.48695 4.51714 4.65690 4.68154 4.70361 4.89043 4.95760 5.02804 5.08782 5.16123 5.25458 5.32440 5.39592 5.44089 5.56496 5.63250 5.65555 5.83225 5.90131 6.01381 6.27242 6.31299 6.52599 6.87295 6.91643 6.94573 7.43808 8.96684 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015642 B = 0.002391 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.629888 B =11708.405979 C =12531.435745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.005 4.005 3 Si 0.961 3.039 4 H -0.266 1.266 5 H -0.290 1.290 6 H -0.264 1.264 7 C -0.526 4.526 8 H 0.068 0.932 9 C 0.033 3.967 10 C -0.075 4.075 11 C -0.121 4.121 12 C 0.115 3.885 13 N -0.583 5.583 14 C 0.562 3.438 15 O -0.571 6.571 16 C 0.099 3.901 17 C -0.138 4.138 18 C 0.171 3.829 19 N -0.418 5.418 20 C -0.041 4.041 21 C -0.042 4.042 22 N -0.516 5.516 23 C 0.180 3.820 24 C -0.147 4.147 25 C 0.129 3.871 26 N -0.467 5.467 27 C 0.084 3.916 28 C -0.112 4.112 29 H 0.260 0.740 30 H -0.014 1.014 31 H -0.018 1.018 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.045 0.955 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.151 0.849 38 H 0.222 0.778 39 H 0.197 0.803 40 H 0.222 0.778 41 H 0.189 0.811 42 H 0.216 0.784 43 H 0.151 0.849 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.995 -15.225 13.537 27.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.202 4.202 3 Si 0.786 3.214 4 H -0.191 1.191 5 H -0.216 1.216 6 H -0.188 1.188 7 C -0.564 4.564 8 H 0.086 0.914 9 C -0.004 4.004 10 C -0.094 4.094 11 C -0.160 4.160 12 C -0.007 4.007 13 N -0.312 5.312 14 C 0.349 3.651 15 O -0.451 6.451 16 C -0.038 4.038 17 C -0.161 4.161 18 C 0.070 3.930 19 N -0.098 5.098 20 C -0.169 4.169 21 C -0.186 4.186 22 N -0.233 5.233 23 C -0.101 4.101 24 C -0.169 4.169 25 C -0.029 4.029 26 N -0.180 5.180 27 C -0.038 4.038 28 C -0.151 4.151 29 H 0.069 0.931 30 H 0.004 0.996 31 H 0.001 0.999 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.064 0.936 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.168 0.832 38 H 0.238 0.762 39 H 0.214 0.786 40 H 0.238 0.762 41 H 0.206 0.794 42 H 0.233 0.767 43 H 0.167 0.833 44 H 0.095 0.905 45 H 0.094 0.906 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 17.173 -15.746 12.946 26.654 hybrid contribution -0.362 1.063 0.085 1.127 sum 16.810 -14.683 13.031 25.845 Atomic orbital electron populations 1.70116 1.07949 1.27548 1.52309 1.25997 0.95655 1.03377 0.95181 0.85554 0.78239 0.78280 0.79312 1.19134 1.21577 1.18827 1.21632 0.93623 0.91749 1.49393 0.91430 1.19016 0.94019 0.93251 0.94111 1.21076 0.97070 0.93448 0.97797 1.21907 0.97699 0.94485 1.01861 1.21705 0.92500 0.99192 0.87306 1.48133 1.45183 1.13195 1.24713 1.18192 0.81101 0.83406 0.82403 1.90747 1.49723 1.30074 1.74571 1.20671 0.95479 0.93612 0.94011 1.21673 1.01187 1.01049 0.92163 1.18041 0.96621 0.92043 0.86330 1.43300 1.27280 1.25946 1.13318 1.23475 1.02225 1.05196 0.86020 1.22935 0.96530 0.96819 1.02306 1.70354 1.19166 1.28189 1.05596 1.25773 0.96857 0.89454 0.98032 1.22536 0.97784 0.94014 1.02564 1.23638 0.95521 0.97314 0.86470 1.67584 1.04515 1.17387 1.28536 1.22940 0.93689 0.80155 1.06970 1.21743 0.97845 0.98828 0.96635 0.93089 0.99581 0.99932 0.91847 0.90671 0.93596 0.89608 0.89548 0.83181 0.76186 0.78572 0.76155 0.79400 0.76749 0.83273 0.90472 0.90641 0.94418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.06 13.29 21.45 0.28 -56.78 16 2 C -0.01 -0.29 5.46 84.65 0.46 0.17 16 3 Si 0.96 43.19 29.54 68.60 2.03 45.21 16 4 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 5 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 6 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 7 C -0.53 -28.66 8.39 25.60 0.21 -28.45 16 8 H 0.07 3.44 7.05 -2.91 -0.02 3.42 16 9 C 0.03 1.71 4.45 29.85 0.13 1.84 16 10 C -0.08 -2.94 2.10 -10.77 -0.02 -2.97 16 11 C -0.12 -4.15 5.36 30.67 0.16 -3.99 16 12 C 0.11 3.36 6.44 86.36 0.56 3.91 16 13 N -0.58 -16.98 2.98 -822.77 -2.45 -19.43 16 14 C 0.56 16.51 7.62 86.88 0.66 17.18 16 15 O -0.57 -19.54 15.93 -3.75 -0.06 -19.60 16 16 C 0.10 2.26 6.46 41.86 0.27 2.53 16 17 C -0.14 -2.67 9.05 22.73 0.21 -2.47 16 18 C 0.17 2.47 6.67 38.34 0.26 2.72 16 19 N -0.42 -6.20 2.99 -349.79 -1.04 -7.24 16 20 C -0.04 -0.44 10.89 83.03 0.90 0.46 16 21 C -0.04 -0.62 11.85 83.51 0.99 0.37 16 22 N -0.52 -10.81 11.24 -199.68 -2.25 -13.05 16 23 C 0.18 3.25 11.95 179.99 2.15 5.40 16 24 C -0.15 -1.22 9.55 22.54 0.22 -1.01 16 25 C 0.13 1.29 11.17 84.75 0.95 2.23 16 26 N -0.47 -8.63 6.35 -185.13 -1.18 -9.80 16 27 C 0.08 2.28 5.96 86.22 0.51 2.79 16 28 C -0.11 -3.90 5.17 30.53 0.16 -3.74 16 29 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 30 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 31 H -0.02 -1.02 8.14 -2.38 -0.02 -1.04 16 32 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 34 H 0.05 1.68 8.14 -2.39 -0.02 1.67 16 35 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.09 2.56 7.00 -2.39 -0.02 2.54 16 37 H 0.15 2.93 6.64 -2.91 -0.02 2.91 16 38 H 0.22 0.34 7.23 -2.91 -0.02 0.32 16 39 H 0.20 1.79 8.06 -2.91 -0.02 1.77 16 40 H 0.22 3.14 7.15 -2.91 -0.02 3.12 16 41 H 0.19 0.03 6.94 -2.91 -0.02 0.01 16 42 H 0.22 0.41 8.06 -2.91 -0.02 0.39 16 43 H 0.15 3.59 3.97 -57.10 -0.23 3.37 16 44 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.08 2.74 6.91 -2.39 -0.02 2.72 16 46 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -77.09 374.63 4.90 -72.19 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: 0.79 Total: 11.50 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: 8.78 Total: -3.00 kcal Atomic # 7 Polarization: -99.67 SS G_CDS: -6.63 Total: -106.30 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -0.06 Total: -19.60 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Total: -77.09 4.90 -72.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563185365.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.418 kcal (2) G-P(sol) polarization free energy of solvation -77.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds