Wall clock time and date at job start Tue Mar 31 2020 23:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38506 * 119.84655 * 2 1 4 4 C 1.38102 * 120.38318 * 179.97438 * 3 2 1 5 5 C 1.38725 * 120.07639 * 359.74773 * 4 3 2 6 6 N 1.39794 * 120.15133 * 180.25490 * 5 4 3 7 7 C 1.36368 * 127.11847 * 123.30495 * 6 5 4 8 8 N 1.30496 * 107.19188 * 179.83370 * 7 6 5 9 9 N 1.28534 * 109.92710 * 0.44453 * 8 7 6 10 10 C 1.30502 * 109.92214 * 359.71495 * 9 8 7 11 11 C 1.40175 * 119.69528 * 0.48187 * 5 4 3 12 12 C 1.47608 * 120.18726 * 179.79180 * 11 5 4 13 13 O 1.21580 * 120.00120 * 299.38331 * 12 11 5 14 14 N 1.34772 * 119.99807 * 119.38074 * 12 11 5 15 15 C 1.46923 * 120.63157 * 4.55108 * 14 12 11 16 16 C 1.53623 * 108.54592 * 126.36651 * 15 14 12 17 17 C 1.53046 * 109.23988 * 54.85685 * 16 15 14 18 18 C 1.50702 * 109.44980 * 178.49794 * 17 16 15 19 19 H 1.07999 * 120.00014 * 120.05694 * 18 17 16 20 20 C 1.37871 * 119.99949 * 300.06404 * 18 17 16 21 21 N 1.31508 * 120.00199 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99957 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47122 * 89.99588 * 22 20 18 24 24 H 1.48496 * 109.47063 * 209.99840 * 22 20 18 25 25 H 1.48497 * 109.47104 * 329.99906 * 22 20 18 26 26 C 1.53037 * 109.53826 * 298.51092 * 17 16 15 27 27 C 1.46923 * 120.63222 * 184.82919 * 14 12 11 28 28 C 1.37849 * 119.84533 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.47051 * 270.02125 * 1 2 3 30 30 H 1.08998 * 109.46803 * 30.02325 * 1 2 3 31 31 H 1.09000 * 109.46897 * 150.02121 * 1 2 3 32 32 H 1.07996 * 119.81293 * 359.97438 * 3 2 1 33 33 H 1.07997 * 119.96241 * 179.97438 * 4 3 2 34 34 H 1.08002 * 126.40184 * 0.02562 * 7 6 5 35 35 H 1.08000 * 126.40324 * 180.02562 * 10 9 8 36 36 H 1.09002 * 109.58744 * 246.19920 * 15 14 12 37 37 H 1.09005 * 109.59055 * 6.62511 * 15 14 12 38 38 H 1.09005 * 109.63611 * 294.87057 * 16 15 14 39 39 H 1.08996 * 109.43357 * 174.72326 * 16 15 14 40 40 H 1.09000 * 109.46075 * 58.53301 * 17 16 15 41 41 H 0.97008 * 120.00315 * 180.02562 * 21 20 18 42 42 H 1.08999 * 109.50159 * 301.41620 * 26 17 16 43 43 H 1.08997 * 109.49923 * 181.31388 * 26 17 16 44 44 H 1.09008 * 109.58391 * 353.37786 * 27 14 12 45 45 H 1.09006 * 109.58975 * 113.65443 * 27 14 12 46 46 H 1.07996 * 120.04505 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1964 1.2013 0.0000 4 6 3.5773 1.2143 0.0005 5 6 4.2838 0.0204 0.0064 6 7 5.6817 0.0317 0.0123 7 6 6.5055 -0.5566 0.9260 8 7 7.7319 -0.3064 0.5569 9 7 7.7308 0.4028 -0.5151 10 6 6.5035 0.6382 -0.8912 11 6 3.5895 -1.1973 0.0015 12 6 4.3303 -2.4741 0.0029 13 8 5.0863 -2.7393 -0.9115 14 7 4.1685 -3.3457 1.0180 15 6 3.1857 -3.0856 2.0787 16 6 2.2623 -4.3074 2.1996 17 6 3.1113 -5.5610 2.4235 18 6 2.2082 -6.7573 2.5795 19 1 2.2862 -7.5862 1.8916 20 6 1.2823 -6.7936 3.6005 21 7 1.1876 -5.7845 4.4384 22 14 0.1624 -8.2762 3.7935 23 1 0.8115 -9.2747 4.6807 24 1 -1.1277 -7.8476 4.3910 25 1 -0.0867 -8.8850 2.4622 26 6 4.0364 -5.7737 1.2231 27 6 4.9759 -4.5712 1.0882 28 6 2.1931 -1.1957 0.0005 29 1 -0.3633 0.0004 1.0276 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6509 2.1334 -0.0004 33 1 4.1079 2.1549 0.0001 34 1 6.2000 -1.1260 1.7914 35 1 6.1962 1.2068 -1.7564 36 1 3.7032 -2.9203 3.0238 37 1 2.5968 -2.2046 1.8233 38 1 1.6819 -4.4199 1.2838 39 1 1.5872 -4.1696 3.0441 40 1 3.7099 -5.4377 3.3260 41 1 0.5364 -5.8102 5.1570 42 1 3.4393 -5.8723 0.3165 43 1 4.6240 -6.6795 1.3726 44 1 5.5687 -4.6708 0.1788 45 1 5.6382 -4.5235 1.9527 46 1 1.6513 -2.1299 0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574711013.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:45 Heat of formation + Delta-G solvation = 59.676843 kcal Electronic energy + Delta-G solvation = -30144.580030 eV Core-core repulsion = 26227.974130 eV Total energy + Delta-G solvation = -3916.605900 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.27090 -41.73333 -40.00991 -38.47130 -36.36975 -35.41529 -33.61602 -32.56908 -32.36535 -31.74309 -31.43971 -28.20321 -27.82246 -25.80856 -24.34858 -24.30235 -24.00367 -23.13109 -22.58134 -21.42884 -20.21201 -19.35210 -18.67308 -18.05957 -17.62569 -17.17791 -16.73153 -16.51684 -16.37943 -15.81662 -15.69273 -15.39318 -15.34686 -15.03749 -14.82537 -14.70951 -14.53214 -14.31989 -13.98396 -13.45948 -13.33299 -13.14779 -13.13042 -12.97425 -12.83733 -12.70027 -12.47628 -12.38474 -12.18334 -12.02544 -11.75252 -11.61369 -11.51707 -11.14304 -11.05244 -10.85825 -10.58458 -10.42275 -10.09541 -9.73599 -9.66317 -8.08905 -6.21498 -0.38363 -0.01722 0.76844 1.35315 1.39888 1.41243 1.44244 1.52062 1.76351 1.87067 2.39404 2.43793 3.18152 3.21191 3.44747 3.52912 3.65836 3.80543 4.00145 4.05935 4.13233 4.17455 4.18677 4.24392 4.36737 4.41973 4.48528 4.51025 4.60570 4.65179 4.78680 4.82291 4.89712 4.90757 4.93721 4.99973 5.10809 5.12847 5.19532 5.25461 5.36720 5.43209 5.45514 5.62619 5.63006 5.96086 5.96242 6.10348 6.29291 6.38290 6.86811 6.90696 7.46349 7.54242 8.94595 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013517 B = 0.003582 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.973376 B = 7814.750437 C = 9269.223945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.063 4.063 3 C -0.074 4.074 4 C -0.092 4.092 5 C 0.120 3.880 6 N -0.428 5.428 7 C 0.168 3.832 8 N -0.328 5.328 9 N -0.335 5.335 10 C 0.181 3.819 11 C -0.120 4.120 12 C 0.550 3.450 13 O -0.576 6.576 14 N -0.590 5.590 15 C 0.107 3.893 16 C -0.109 4.109 17 C 0.046 3.954 18 C -0.536 4.536 19 H 0.045 0.955 20 C 0.023 3.977 21 N -0.908 5.908 22 Si 0.945 3.055 23 H -0.280 1.280 24 H -0.280 1.280 25 H -0.275 1.275 26 C -0.112 4.112 27 C 0.117 3.883 28 C -0.087 4.087 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.067 0.933 32 H 0.180 0.820 33 H 0.165 0.835 34 H 0.220 0.780 35 H 0.260 0.740 36 H 0.068 0.932 37 H 0.099 0.901 38 H 0.031 0.969 39 H 0.084 0.916 40 H 0.005 0.995 41 H 0.262 0.738 42 H 0.041 0.959 43 H 0.063 0.937 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.891 18.979 -7.180 20.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.064 4.064 3 C -0.092 4.092 4 C -0.111 4.111 5 C 0.028 3.972 6 N -0.116 5.116 7 C -0.120 4.120 8 N -0.166 5.166 9 N -0.172 5.172 10 C -0.106 4.106 11 C -0.124 4.124 12 C 0.338 3.662 13 O -0.457 6.457 14 N -0.321 5.321 15 C -0.014 4.014 16 C -0.147 4.147 17 C 0.027 3.973 18 C -0.574 4.574 19 H 0.063 0.937 20 C -0.176 4.176 21 N -0.548 5.548 22 Si 0.772 3.228 23 H -0.206 1.206 24 H -0.206 1.206 25 H -0.200 1.200 26 C -0.150 4.150 27 C -0.005 4.005 28 C -0.106 4.106 29 H 0.105 0.895 30 H 0.116 0.884 31 H 0.086 0.914 32 H 0.197 0.803 33 H 0.183 0.817 34 H 0.237 0.763 35 H 0.276 0.724 36 H 0.087 0.913 37 H 0.117 0.883 38 H 0.050 0.950 39 H 0.102 0.898 40 H 0.023 0.977 41 H 0.072 0.928 42 H 0.060 0.940 43 H 0.082 0.918 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.014 18.867 -7.474 20.393 hybrid contribution -1.697 -1.773 0.359 2.481 sum -3.711 17.093 -7.115 18.883 Atomic orbital electron populations 1.20967 0.88193 1.04517 1.03986 1.20329 0.98217 0.91840 0.95986 1.21543 0.92469 0.99250 0.95933 1.21340 0.95074 0.95814 0.98831 1.17592 0.78935 0.93948 1.06685 1.44045 1.06257 1.40248 1.21013 1.26863 0.86435 1.00873 0.97841 1.74081 1.19006 1.14512 1.08961 1.74066 1.19708 1.15180 1.08228 1.27496 0.85593 0.99903 0.97602 1.19790 0.95073 0.91305 1.06243 1.18641 0.81551 0.84348 0.81621 1.90782 1.40357 1.78064 1.36533 1.48240 1.38588 1.21052 1.24178 1.22216 0.90224 0.99655 0.89305 1.21825 0.98184 0.93902 1.00837 1.18608 0.92897 0.93657 0.92091 1.21500 1.19181 1.03693 1.13014 0.93688 1.25549 0.98343 0.98296 0.95427 1.69920 1.36430 1.31465 1.16961 0.85760 0.78689 0.80323 0.78063 1.20606 1.20554 1.19961 1.21843 0.97554 0.96367 0.99242 1.21638 0.93266 0.83510 1.02110 1.21210 0.90641 1.00225 0.98570 0.89544 0.88443 0.91391 0.80272 0.81707 0.76327 0.72436 0.91333 0.88289 0.95016 0.89785 0.97696 0.92831 0.93992 0.91823 0.90723 0.90650 0.85017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.12 10.00 71.24 0.71 -0.41 16 2 C -0.06 -0.86 5.87 -19.89 -0.12 -0.98 16 3 C -0.07 -0.69 9.68 22.30 0.22 -0.47 16 4 C -0.09 -1.15 9.80 22.35 0.22 -0.93 16 5 C 0.12 2.55 5.97 38.46 0.23 2.78 16 6 N -0.43 -10.70 2.47 -353.12 -0.87 -11.57 16 7 C 0.17 4.92 11.39 179.84 2.05 6.97 16 8 N -0.33 -11.29 12.19 -59.46 -0.73 -12.02 16 9 N -0.33 -10.71 12.19 -59.46 -0.73 -11.43 16 10 C 0.18 4.33 12.59 179.83 2.26 6.59 16 11 C -0.12 -3.05 4.82 -20.00 -0.10 -3.14 16 12 C 0.55 18.42 5.62 86.72 0.49 18.91 16 13 O -0.58 -23.63 16.34 -3.97 -0.06 -23.69 16 14 N -0.59 -19.85 2.97 -821.73 -2.44 -22.29 16 15 C 0.11 3.47 6.08 86.51 0.53 3.99 16 16 C -0.11 -4.47 5.17 30.82 0.16 -4.31 16 17 C 0.05 2.12 2.06 -11.51 -0.02 2.10 16 18 C -0.54 -27.97 8.56 25.60 0.22 -27.75 16 19 H 0.04 2.37 7.74 -2.91 -0.02 2.35 16 20 C 0.02 1.20 5.30 84.65 0.45 1.65 16 21 N -0.91 -47.90 11.31 21.44 0.24 -47.66 16 22 Si 0.95 41.44 29.54 68.60 2.03 43.47 16 23 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 24 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 25 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 26 C -0.11 -4.51 5.30 30.67 0.16 -4.35 16 27 C 0.12 4.19 6.44 86.36 0.56 4.75 16 28 C -0.09 -1.83 7.13 22.52 0.16 -1.67 16 29 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.10 0.44 8.08 -2.39 -0.02 0.42 16 31 H 0.07 0.75 8.08 -2.39 -0.02 0.73 16 32 H 0.18 0.30 8.06 -2.91 -0.02 0.28 16 33 H 0.17 1.20 8.06 -2.91 -0.02 1.18 16 34 H 0.22 5.74 8.06 -2.91 -0.02 5.72 16 35 H 0.26 3.46 8.06 -2.91 -0.02 3.44 16 36 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.10 2.68 4.55 -2.38 -0.01 2.67 16 38 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 39 H 0.08 3.87 6.03 -2.39 -0.01 3.86 16 40 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 41 H 0.26 13.21 8.31 -92.70 -0.77 12.44 16 42 H 0.04 1.75 8.14 -2.39 -0.02 1.74 16 43 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 44 H 0.07 2.77 7.00 -2.38 -0.02 2.76 16 45 H 0.08 2.53 8.14 -2.38 -0.02 2.51 16 46 H 0.13 3.03 7.74 -2.91 -0.02 3.01 16 Total: -1.00 -72.01 376.88 6.61 -65.39 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 0.99 Total: 16.06 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: 8.17 Total: 3.74 kcal Atomic # 7 Polarization: -100.45 SS G_CDS: -4.52 Total: -104.96 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.06 Total: -23.69 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Total: -72.01 6.61 -65.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574711013.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.070 kcal (2) G-P(sol) polarization free energy of solvation -72.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds