Wall clock time and date at job start Tue Mar 31 2020 23:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38232 * 120.00794 * 2 1 4 4 C 1.38220 * 120.01498 * 179.97438 * 3 2 1 5 5 C 1.50692 * 119.98848 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47408 * 90.00162 * 5 4 3 7 7 N 1.46900 * 109.47517 * 180.02562 * 6 5 4 8 8 C 1.46900 * 110.99938 * 180.02562 * 7 6 5 9 9 C 1.53006 * 109.46813 * 180.02562 * 8 7 6 10 10 H 1.08998 * 109.47343 * 60.00127 * 9 8 7 11 11 O 1.42897 * 109.47038 * 299.99483 * 9 8 7 12 12 C 1.53001 * 109.46830 * 179.97438 * 9 8 7 13 13 N 1.46895 * 109.47204 * 185.00132 * 12 9 8 14 14 C 1.46905 * 111.00112 * 66.04306 * 13 12 9 15 15 C 1.46900 * 111.00341 * 190.00068 * 13 12 9 16 16 C 1.50702 * 109.47410 * 169.99646 * 15 13 12 17 17 H 1.08001 * 119.99375 * 0.02562 * 16 15 13 18 18 C 1.37879 * 120.00220 * 179.97438 * 16 15 13 19 19 N 1.31510 * 119.99715 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99586 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47241 * 89.99975 * 20 18 16 22 22 H 1.48500 * 109.46539 * 209.99496 * 20 18 16 23 23 H 1.48496 * 109.47379 * 329.99304 * 20 18 16 24 24 C 1.38264 * 120.02583 * 0.02562 * 4 3 2 25 25 C 1.38189 * 120.01199 * 359.97438 * 24 4 3 26 26 C 1.38335 * 120.00426 * 179.97438 * 2 1 3 27 27 Cl 1.73595 * 120.01468 * 359.74809 * 26 2 1 28 28 H 1.08997 * 109.47389 * 270.01704 * 1 2 3 29 29 H 1.09002 * 109.47291 * 30.02179 * 1 2 3 30 30 H 1.09002 * 109.47234 * 150.01696 * 1 2 3 31 31 H 1.08002 * 119.99411 * 359.95836 * 3 2 1 32 32 H 1.08998 * 109.47388 * 210.00495 * 5 4 3 33 33 H 1.09001 * 109.47195 * 330.00365 * 5 4 3 34 34 H 1.08998 * 109.47117 * 300.00498 * 6 5 4 35 35 H 1.09001 * 109.46777 * 59.99947 * 6 5 4 36 36 H 1.00896 * 110.99822 * 56.04879 * 7 6 5 37 37 H 1.09003 * 109.47207 * 299.99622 * 8 7 6 38 38 H 1.08994 * 109.47753 * 59.99808 * 8 7 6 39 39 H 0.96702 * 113.99989 * 300.00426 * 11 9 8 40 40 H 1.09007 * 109.47240 * 305.00039 * 12 9 8 41 41 H 1.09000 * 109.47073 * 64.99543 * 12 9 8 42 42 H 1.08996 * 109.46916 * 60.00611 * 14 13 12 43 43 H 1.09005 * 109.47029 * 180.02562 * 14 13 12 44 44 H 1.08997 * 109.47080 * 300.00236 * 14 13 12 45 45 H 1.08997 * 109.47110 * 289.99862 * 15 13 12 46 46 H 1.08999 * 109.47109 * 49.99467 * 15 13 12 47 47 H 0.97003 * 119.99391 * 179.97438 * 19 18 16 48 48 H 1.07997 * 119.99869 * 179.97438 * 24 4 3 49 49 H 1.08001 * 120.00973 * 180.02562 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1970 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.3335 2.5025 0.0011 6 6 4.5879 2.9439 1.4438 7 7 5.3214 4.2167 1.4443 8 6 5.5845 4.6720 2.8160 9 6 6.3477 5.9975 2.7757 10 1 5.7507 6.7448 2.2531 11 8 7.5873 5.8128 2.0893 12 6 6.6212 6.4721 4.2044 13 7 7.2468 7.8007 4.1677 14 6 6.3164 8.8063 3.6374 15 6 7.7390 8.1877 5.4966 16 6 8.5837 9.4300 5.3773 17 1 8.7390 9.8866 4.4109 18 6 9.1574 9.9843 6.5019 19 7 9.8949 11.0681 6.3976 20 14 8.8880 9.1949 8.1733 21 1 9.9554 8.1938 8.4257 22 1 8.9308 10.2404 9.2270 23 1 7.5638 8.5232 8.1960 24 6 4.2725 0.0002 0.0005 25 6 3.5825 -1.1971 0.0005 26 6 2.1987 -1.1980 0.0005 27 17 1.3313 -2.7016 0.0078 28 1 -0.3634 0.0003 1.0276 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3634 -0.8901 -0.5136 31 1 1.6583 2.1324 -0.0007 32 1 5.2861 2.3726 -0.5124 33 1 3.7444 3.2621 -0.5127 34 1 3.6353 3.0738 1.9573 35 1 5.1770 2.1843 1.9576 36 1 4.8251 4.9203 0.9184 37 1 4.6390 4.8134 3.3396 38 1 6.1811 3.9246 3.3389 39 1 8.1707 5.1599 2.4997 40 1 5.6819 6.5279 4.7548 41 1 7.2908 5.7686 4.6990 42 1 5.4321 8.8539 4.2728 43 1 6.8052 9.7805 3.6207 44 1 6.0219 8.5306 2.6248 45 1 6.8925 8.3857 6.1540 46 1 8.3397 7.3784 5.9115 47 1 10.2982 11.4583 7.1888 48 1 5.3525 0.0008 0.0005 49 1 4.1231 -2.1321 0.0010 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576392962.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:39 Heat of formation + Delta-G solvation = -37.052110 kcal Electronic energy + Delta-G solvation = -25885.875426 eV Core-core repulsion = 22066.182537 eV Total energy + Delta-G solvation = -3819.692889 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.166 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.12797 -38.41666 -37.10596 -36.38733 -35.33299 -33.67512 -32.59347 -32.43871 -30.21858 -28.54430 -27.57380 -27.28459 -25.75764 -23.74729 -22.84137 -22.51435 -21.31733 -20.69445 -20.12131 -17.32320 -16.95081 -16.74906 -16.32916 -15.89211 -15.56871 -15.32145 -14.87023 -14.69598 -14.60885 -14.28543 -14.03804 -13.88036 -13.71545 -13.62833 -13.10226 -13.00975 -12.84695 -12.70985 -12.56633 -12.29897 -12.07075 -12.02000 -11.67607 -11.58267 -11.48231 -11.36436 -11.21062 -11.11225 -10.98961 -10.79226 -10.53556 -10.29955 -10.02049 -9.54017 -9.32412 -9.22963 -8.93483 -8.61441 -8.57073 -7.33939 -6.04823 -4.01980 0.65877 0.80454 1.70402 3.09140 3.27106 3.34550 3.35669 3.76519 4.20572 4.28788 4.41174 4.43650 4.60576 4.72753 4.73577 4.75621 4.88526 4.92132 5.06436 5.08406 5.12830 5.14997 5.21470 5.28246 5.28731 5.36045 5.45123 5.52125 5.55652 5.60214 5.64379 5.72354 5.74921 5.88225 5.92196 6.08542 6.12176 6.19994 6.29820 6.35058 6.67018 6.74161 6.84777 6.97951 7.13583 7.58168 7.89108 7.99039 8.12666 8.66377 9.04881 9.56701 11.08380 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.026624 B = 0.001445 C = 0.001429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.437463 B =19378.154494 C =19594.192008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.074 4.074 3 C -0.107 4.107 4 C -0.068 4.068 5 C -0.081 4.081 6 C 0.065 3.935 7 N -0.679 5.679 8 C 0.027 3.973 9 C 0.117 3.883 10 H 0.094 0.906 11 O -0.534 6.534 12 C 0.021 3.979 13 N -0.520 5.520 14 C 0.035 3.965 15 C 0.162 3.838 16 C -0.508 4.508 17 H 0.082 0.918 18 C 0.068 3.932 19 N -0.900 5.900 20 Si 0.875 3.125 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.269 1.269 24 C -0.109 4.109 25 C -0.104 4.104 26 C -0.043 4.043 27 Cl -0.072 7.072 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.130 0.870 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.028 0.972 35 H 0.073 0.927 36 H 0.342 0.658 37 H 0.035 0.965 38 H 0.075 0.925 39 H 0.368 0.632 40 H 0.027 0.973 41 H 0.070 0.930 42 H 0.008 0.992 43 H 0.081 0.919 44 H 0.049 0.951 45 H -0.014 1.014 46 H 0.022 0.978 47 H 0.263 0.737 48 H 0.134 0.866 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.182 -26.346 -14.059 35.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.075 4.075 3 C -0.125 4.125 4 C -0.069 4.069 5 C -0.118 4.118 6 C -0.064 4.064 7 N -0.310 5.310 8 C -0.103 4.103 9 C 0.056 3.944 10 H 0.112 0.888 11 O -0.337 6.337 12 C -0.108 4.108 13 N -0.243 5.243 14 C -0.113 4.113 15 C 0.036 3.964 16 C -0.546 4.546 17 H 0.100 0.900 18 C -0.134 4.134 19 N -0.539 5.539 20 Si 0.702 3.298 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.194 1.194 24 C -0.127 4.127 25 C -0.123 4.123 26 C -0.070 4.070 27 Cl -0.043 7.043 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.148 0.852 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.046 0.954 35 H 0.091 0.909 36 H 0.160 0.840 37 H 0.053 0.947 38 H 0.093 0.907 39 H 0.215 0.785 40 H 0.045 0.955 41 H 0.089 0.911 42 H 0.027 0.973 43 H 0.100 0.900 44 H 0.068 0.932 45 H 0.004 0.996 46 H 0.040 0.960 47 H 0.073 0.927 48 H 0.151 0.849 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -18.384 -26.208 -14.718 35.234 hybrid contribution -1.549 -0.645 2.349 2.887 sum -19.933 -26.853 -12.369 35.657 Atomic orbital electron populations 1.20883 0.90285 1.03520 1.03015 1.19771 0.96755 0.91392 0.99552 1.20927 0.93561 0.97160 1.00886 1.19970 0.93569 0.95394 0.97959 1.20599 1.00629 0.93187 0.97412 1.21920 0.96239 0.92641 0.95623 1.60326 1.51326 1.05261 1.14038 1.22724 0.99503 0.98496 0.89603 1.21860 0.86029 0.93784 0.92694 0.88847 1.86609 1.28514 1.64533 1.54093 1.22789 0.97790 0.94258 0.95997 1.61844 1.35536 0.99706 1.27226 1.22295 0.93814 0.97799 0.97434 1.20197 0.94412 0.97032 0.84806 1.21043 1.29226 1.08271 0.96101 0.90033 1.24902 0.94884 0.94838 0.98736 1.69895 1.33474 1.20923 1.29613 0.86869 0.78995 0.79376 0.84527 1.20146 1.21191 1.19437 1.21058 1.00390 0.91063 1.00178 1.21056 0.91898 0.99273 1.00036 1.20819 0.92462 0.86651 1.07050 1.98360 1.76953 1.32090 1.96931 0.90605 0.91006 0.90801 0.85191 0.89495 0.90749 0.95375 0.90882 0.84035 0.94699 0.90672 0.78545 0.95490 0.91106 0.97328 0.90047 0.93182 0.99611 0.95966 0.92676 0.84855 0.84913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.67 9.61 36.00 0.35 -0.32 16 2 C -0.07 -0.54 5.88 -104.59 -0.62 -1.15 16 3 C -0.11 -0.74 9.36 -39.59 -0.37 -1.11 16 4 C -0.07 -0.48 5.13 -104.62 -0.54 -1.02 16 5 C -0.08 -0.54 5.60 -27.89 -0.16 -0.69 16 6 C 0.07 0.51 5.67 -3.83 -0.02 0.49 16 7 N -0.68 -6.41 6.37 -113.78 -0.72 -7.14 16 8 C 0.03 0.28 5.35 -3.82 -0.02 0.26 16 9 C 0.12 1.56 3.13 -26.73 -0.08 1.48 16 10 H 0.09 1.29 6.33 -51.93 -0.33 0.97 16 11 O -0.53 -8.09 13.15 -35.23 -0.46 -8.55 16 12 C 0.02 0.35 4.60 -3.83 -0.02 0.33 16 13 N -0.52 -10.83 4.70 -244.37 -1.15 -11.98 16 14 C 0.03 0.67 9.14 60.07 0.55 1.22 16 15 C 0.16 3.94 3.79 -4.97 -0.02 3.92 16 16 C -0.51 -14.56 9.01 -34.44 -0.31 -14.87 16 17 H 0.08 2.56 7.37 -52.49 -0.39 2.17 16 18 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 19 N -0.90 -27.68 13.96 55.43 0.77 -26.91 16 20 Si 0.87 21.49 27.47 -169.99 -4.67 16.82 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 24 C -0.11 -0.75 9.70 -39.59 -0.38 -1.13 16 25 C -0.10 -0.74 9.83 -39.55 -0.39 -1.13 16 26 C -0.04 -0.33 6.31 -39.49 -0.25 -0.58 16 27 Cl -0.07 -0.53 27.30 -51.86 -1.42 -1.95 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 30 H 0.07 0.41 6.91 -51.93 -0.36 0.05 16 31 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 32 H 0.09 0.61 8.09 -51.93 -0.42 0.19 16 33 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 34 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.34 3.05 8.73 -39.29 -0.34 2.71 16 37 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.37 4.60 9.05 45.56 0.41 5.01 16 40 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 41 H 0.07 1.10 7.93 -51.93 -0.41 0.69 16 42 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 43 H 0.08 1.76 6.76 -51.93 -0.35 1.41 16 44 H 0.05 0.83 6.37 -51.93 -0.33 0.50 16 45 H -0.01 -0.34 7.18 -51.93 -0.37 -0.71 16 46 H 0.02 0.54 7.36 -51.93 -0.38 0.16 16 47 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 48 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 49 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 LS Contribution 408.99 15.07 6.16 6.16 Total: -1.00 -32.27 408.99 -11.37 -43.64 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -7.51 Total: 2.34 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -2.38 Total: -12.44 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: -1.10 Total: -46.03 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: -0.46 Total: -8.55 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.42 Total: -1.95 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.27 -11.37 -43.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576392962.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.586 kcal (2) G-P(sol) polarization free energy of solvation -32.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds