Wall clock time and date at job start Tue Mar 31 2020 23:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38234 * 120.00257 * 2 1 4 4 C 1.38238 * 119.99675 * 180.27927 * 3 2 1 5 5 C 1.38228 * 120.00120 * 359.47825 * 4 3 2 6 6 C 1.50698 * 120.00201 * 180.23979 * 5 4 3 7 7 H 1.09000 * 115.55636 * 154.55974 * 6 5 4 8 8 C 1.53008 * 117.49823 * 8.88821 * 6 5 4 9 9 C 1.53004 * 117.49883 * 300.26706 * 6 5 4 10 10 H 1.09000 * 117.49606 * 359.97438 * 9 6 5 11 11 N 1.46501 * 117.50012 * 214.97883 * 9 6 5 12 12 C 1.34775 * 120.00309 * 154.99947 * 11 9 6 13 13 O 1.21592 * 119.99999 * 359.97438 * 12 11 9 14 14 N 1.34774 * 120.00329 * 179.97438 * 12 11 9 15 15 C 1.40193 * 120.00348 * 179.97438 * 14 12 11 16 16 C 1.40402 * 125.96725 * 359.71637 * 15 14 12 17 17 C 1.35243 * 107.86490 * 179.82707 * 16 15 14 18 18 N 1.34963 * 107.85997 * 0.43189 * 17 16 15 19 19 C 1.46498 * 125.97960 * 179.74595 * 18 17 16 20 20 C 1.50704 * 109.46983 * 125.00037 * 19 18 17 21 21 H 1.07999 * 120.00154 * 0.02562 * 20 19 18 22 22 C 1.37878 * 119.99877 * 180.02562 * 20 19 18 23 23 N 1.31510 * 120.00248 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 120.00048 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46944 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.46923 * 119.99727 * 24 22 20 27 27 H 1.48498 * 109.47155 * 239.99807 * 24 22 20 28 28 N 1.31204 * 125.97645 * 180.02562 * 15 14 12 29 29 C 1.38234 * 120.00000 * 0.52176 * 5 4 3 30 30 C 1.38234 * 119.99503 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.46910 * 89.99759 * 1 2 3 32 32 H 1.08988 * 109.47584 * 210.00457 * 1 2 3 33 33 H 1.09000 * 109.47013 * 330.00974 * 1 2 3 34 34 H 1.08002 * 119.99744 * 359.97438 * 3 2 1 35 35 H 1.08004 * 119.99577 * 179.72816 * 4 3 2 36 36 H 1.08999 * 117.49701 * 359.97438 * 8 6 5 37 37 H 1.08988 * 117.50236 * 144.99856 * 8 6 5 38 38 H 0.97005 * 119.99569 * 334.99989 * 11 9 6 39 39 H 0.97005 * 119.99550 * 0.02562 * 14 12 11 40 40 H 1.07999 * 126.07356 * 359.97438 * 16 15 14 41 41 H 1.08006 * 126.07460 * 180.15594 * 17 16 15 42 42 H 1.09003 * 109.47610 * 244.99632 * 19 18 17 43 43 H 1.08996 * 109.47464 * 5.00367 * 19 18 17 44 44 H 0.97003 * 120.00404 * 180.02562 * 23 22 20 45 45 H 1.08001 * 120.00310 * 179.72161 * 29 5 4 46 46 H 1.07997 * 120.00460 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1970 -0.0058 5 6 4.2717 -0.0001 -0.0008 6 6 5.7787 -0.0003 -0.0017 7 1 6.2491 -0.8864 0.4245 8 6 6.4854 1.3415 0.2015 9 6 6.4845 0.6783 -1.1774 10 1 5.8588 1.1245 -1.9504 11 7 7.7410 0.0873 -1.6446 12 6 8.1458 0.2818 -2.9153 13 8 7.4679 0.9475 -3.6741 14 7 9.3019 -0.2614 -3.3449 15 6 9.7228 -0.0596 -4.6668 16 6 9.0389 0.6780 -5.6464 17 6 9.7711 0.6375 -6.7828 18 7 10.8720 -0.1043 -6.5396 19 6 11.9343 -0.4090 -7.5013 20 6 13.2639 0.0143 -6.9320 21 1 13.3128 0.4647 -5.9517 22 6 14.4179 -0.1736 -7.6627 23 7 14.3585 -0.7227 -8.8563 24 14 16.0660 0.3517 -6.9574 25 1 15.8626 0.9391 -5.6087 26 1 16.9593 -0.8301 -6.8536 27 1 16.6861 1.3641 -7.8494 28 7 10.8216 -0.5315 -5.2065 29 6 3.5805 -1.1973 -0.0008 30 6 2.1981 -1.1972 -0.0005 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8898 0.5138 33 1 -0.3633 0.8901 0.5137 34 1 1.6582 2.1324 -0.0004 35 1 4.1206 2.1323 -0.0103 36 1 5.8603 2.2244 0.3353 37 1 7.4205 1.3382 0.7613 38 1 8.2816 -0.4440 -1.0392 39 1 9.8425 -0.7928 -2.7396 40 1 8.0966 1.1892 -5.5152 41 1 9.5175 1.1106 -7.7200 42 1 11.9486 -1.4808 -7.6995 43 1 11.7488 0.1299 -8.4304 44 1 15.1704 -0.8552 -9.3702 45 1 4.1204 -2.1326 -0.0014 46 1 1.6581 -2.1325 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576462176.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:34 Heat of formation + Delta-G solvation = 103.517497 kcal Electronic energy + Delta-G solvation = -27033.793027 eV Core-core repulsion = 23119.088200 eV Total energy + Delta-G solvation = -3914.704827 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.78667 -40.19287 -39.45113 -37.55387 -34.68836 -33.84662 -33.26367 -32.12105 -31.20659 -30.68133 -29.27041 -27.40340 -26.60741 -23.69701 -23.44198 -22.61923 -22.47807 -21.34088 -20.61383 -20.37158 -19.78783 -18.14496 -17.03551 -16.73936 -16.56492 -16.08508 -15.47455 -15.42390 -15.30191 -14.90032 -14.57455 -14.21785 -14.13607 -14.10897 -13.82200 -13.65497 -13.10458 -12.75422 -12.65740 -12.56631 -12.37182 -12.25596 -12.17934 -11.86228 -11.64465 -11.47548 -11.27333 -11.03869 -10.87726 -10.78631 -10.42112 -10.25739 -10.09891 -9.69689 -9.47289 -9.23605 -9.21798 -8.63199 -8.54945 -8.09199 -7.40749 -6.23555 -4.28457 0.95987 1.10755 2.28203 2.63153 3.03669 3.22634 3.29904 3.30418 3.36344 3.54315 3.73064 3.89720 4.20871 4.31140 4.36196 4.43314 4.46702 4.57276 4.62862 4.70286 4.79246 5.04489 5.11644 5.14551 5.22837 5.31585 5.38888 5.43487 5.48498 5.63643 5.65811 5.76778 5.79493 5.82395 6.11421 6.18004 6.28871 6.29214 6.33135 6.55082 6.58282 6.69783 6.87855 7.00999 7.10936 7.49387 7.70583 7.82184 7.96650 8.07846 8.55370 8.67134 8.82094 9.37193 10.85151 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.028083 B = 0.001631 C = 0.001589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.817998 B =17159.825428 C =17612.218096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.092 4.092 3 C -0.117 4.117 4 C -0.115 4.115 5 C -0.054 4.054 6 C -0.127 4.127 7 H 0.116 0.884 8 C -0.187 4.187 9 C 0.124 3.876 10 H 0.143 0.857 11 N -0.716 5.716 12 C 0.717 3.283 13 O -0.564 6.564 14 N -0.642 5.642 15 C 0.275 3.725 16 C -0.286 4.286 17 C 0.051 3.949 18 N -0.320 5.320 19 C 0.258 3.742 20 C -0.528 4.528 21 H 0.069 0.931 22 C 0.062 3.938 23 N -0.895 5.895 24 Si 0.907 3.093 25 H -0.271 1.271 26 H -0.281 1.281 27 H -0.282 1.282 28 N -0.307 5.307 29 C -0.107 4.107 30 C -0.119 4.119 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.399 0.601 39 H 0.407 0.593 40 H 0.161 0.839 41 H 0.168 0.832 42 H 0.045 0.955 43 H 0.057 0.943 44 H 0.266 0.734 45 H 0.122 0.878 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.970 1.200 20.330 31.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.092 4.092 3 C -0.135 4.135 4 C -0.133 4.133 5 C -0.054 4.054 6 C -0.147 4.147 7 H 0.134 0.866 8 C -0.225 4.225 9 C 0.017 3.983 10 H 0.160 0.840 11 N -0.369 5.369 12 C 0.417 3.583 13 O -0.439 6.439 14 N -0.292 5.292 15 C 0.021 3.979 16 C -0.317 4.317 17 C -0.099 4.099 18 N -0.102 5.102 19 C 0.141 3.859 20 C -0.566 4.566 21 H 0.088 0.912 22 C -0.141 4.141 23 N -0.534 5.534 24 Si 0.735 3.265 25 H -0.196 1.196 26 H -0.207 1.207 27 H -0.208 1.208 28 N -0.138 5.138 29 C -0.125 4.125 30 C -0.137 4.137 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.140 0.860 35 H 0.143 0.857 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.233 0.767 39 H 0.242 0.758 40 H 0.178 0.822 41 H 0.185 0.815 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.140 0.860 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -23.315 1.032 19.533 30.434 hybrid contribution 0.902 0.078 0.780 1.195 sum -22.413 1.111 20.313 30.269 Atomic orbital electron populations 1.20794 0.91276 1.02678 1.02398 1.19941 0.96093 0.93274 0.99906 1.21012 0.94063 0.97569 1.00872 1.21065 0.94175 0.97794 1.00222 1.19022 0.92767 0.93365 1.00272 1.21602 0.91297 0.97875 1.03887 0.86627 1.23698 1.02565 0.95970 1.00294 1.21560 0.86581 0.99024 0.91179 0.83975 1.44382 1.24189 1.57136 1.11242 1.15526 0.80801 0.80074 0.81922 1.90870 1.55622 1.43378 1.53986 1.41339 1.22739 1.54838 1.10261 1.18762 0.94413 1.00048 0.84670 1.21511 1.05696 1.12779 0.91752 1.22557 0.89051 0.98014 1.00251 1.49051 1.17503 1.36419 1.07223 1.19742 0.83168 0.98153 0.84886 1.21310 0.90216 1.41292 1.03785 0.91244 1.24946 0.99568 0.94822 0.94765 1.69926 1.29176 1.43201 1.11064 0.86279 0.82696 0.78331 0.79224 1.19587 1.20715 1.20772 1.77319 1.18117 1.25605 0.92793 1.20953 0.94080 0.97529 0.99956 1.21014 0.94081 0.97575 1.00991 0.91125 0.91618 0.91594 0.86046 0.85713 0.87466 0.87879 0.76716 0.75840 0.82179 0.81505 0.93739 0.92514 0.92398 0.86012 0.86083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 10.01 36.01 0.36 -0.25 16 2 C -0.09 -0.70 5.88 -104.62 -0.62 -1.31 16 3 C -0.12 -0.90 9.70 -39.58 -0.38 -1.28 16 4 C -0.11 -0.92 9.29 -39.58 -0.37 -1.28 16 5 C -0.05 -0.45 5.61 -104.63 -0.59 -1.04 16 6 C -0.13 -0.93 5.97 -91.77 -0.55 -1.48 16 7 H 0.12 0.71 8.14 -51.93 -0.42 0.29 16 8 C -0.19 -1.28 9.79 -26.72 -0.26 -1.54 16 9 C 0.12 1.14 6.06 -67.93 -0.41 0.73 16 10 H 0.14 1.61 7.40 -51.93 -0.38 1.22 16 11 N -0.72 -7.16 5.57 -58.67 -0.33 -7.49 16 12 C 0.72 10.56 8.53 -86.92 -0.74 9.82 16 13 O -0.56 -10.22 13.04 5.28 0.07 -10.16 16 14 N -0.64 -9.97 5.45 -15.51 -0.08 -10.06 16 15 C 0.27 5.58 8.11 -154.37 -1.25 4.33 16 16 C -0.29 -5.78 9.60 -39.83 -0.38 -6.16 16 17 C 0.05 1.04 11.44 -17.24 -0.20 0.84 16 18 N -0.32 -7.50 3.67 -62.56 -0.23 -7.73 16 19 C 0.26 6.59 6.26 -5.19 -0.03 6.56 16 20 C -0.53 -14.74 9.24 -34.44 -0.32 -15.06 16 21 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 22 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 23 N -0.90 -25.37 13.29 55.43 0.74 -24.64 16 24 Si 0.91 21.39 29.54 -169.99 -5.02 16.36 16 25 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 28 N -0.31 -7.12 12.42 31.44 0.39 -6.73 16 29 C -0.11 -0.87 9.74 -39.58 -0.39 -1.26 16 30 C -0.12 -0.92 9.70 -39.58 -0.38 -1.30 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.29 8.08 -51.94 -0.42 -0.13 16 33 H 0.07 0.29 8.09 -51.93 -0.42 -0.13 16 34 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 35 H 0.13 0.82 6.03 -52.48 -0.32 0.51 16 36 H 0.11 0.66 6.18 -51.93 -0.32 0.33 16 37 H 0.10 0.62 8.14 -51.94 -0.42 0.20 16 38 H 0.40 2.75 8.84 -40.82 -0.36 2.39 16 39 H 0.41 5.03 8.84 -40.82 -0.36 4.67 16 40 H 0.16 3.18 5.91 -52.49 -0.31 2.87 16 41 H 0.17 2.76 8.06 -52.48 -0.42 2.34 16 42 H 0.04 1.20 8.14 -51.93 -0.42 0.77 16 43 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 44 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 45 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 46 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 LS Contribution 393.04 15.07 5.92 5.92 Total: -1.00 -33.82 393.04 -11.39 -45.20 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -6.24 Total: 7.37 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -6.61 Total: -8.07 kcal Atomic # 7 Polarization: -57.12 SS G_CDS: 0.49 Total: -56.64 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.07 Total: -10.16 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.82 -11.39 -45.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576462176.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.722 kcal (2) G-P(sol) polarization free energy of solvation -33.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds