Wall clock time and date at job start Tue Mar 31 2020 23:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 120.00209 * 2 1 4 4 H 1.48498 * 109.47078 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46599 * 299.99912 * 3 2 1 6 6 H 1.48498 * 109.47005 * 59.99654 * 3 2 1 7 7 C 1.37877 * 119.99670 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00017 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00225 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47329 * 180.02562 * 9 7 2 11 11 C 1.53036 * 109.46050 * 174.99742 * 10 9 7 12 12 C 1.53194 * 109.31169 * 181.38677 * 11 10 9 13 13 N 1.46933 * 108.77339 * 305.36214 * 12 11 10 14 14 C 1.34770 * 120.63000 * 233.58499 * 13 12 11 15 15 O 1.21603 * 120.00442 * 6.39292 * 14 13 12 16 16 C 1.47431 * 119.99873 * 186.38755 * 14 13 12 17 17 C 1.41368 * 126.40664 * 29.19556 * 16 14 13 18 18 N 1.30444 * 108.07622 * 179.76259 * 17 16 14 19 19 N 1.39940 * 108.91222 * 0.40712 * 18 17 16 20 20 C 1.39915 * 125.77209 * 179.85101 * 19 18 17 21 21 C 1.39327 * 120.85782 * 179.41414 * 20 19 18 22 22 C 1.38008 * 119.08672 * 179.72830 * 21 20 19 23 23 N 1.31938 * 120.82525 * 0.55447 * 22 21 20 24 24 C 1.31936 * 121.88830 * 359.71768 * 23 22 21 25 25 C 1.38009 * 120.83295 * 0.02562 * 24 23 22 26 26 C 1.34597 * 108.45224 * 359.58376 * 19 18 17 27 27 C 1.46928 * 118.73610 * 53.86547 * 13 12 11 28 28 C 1.53040 * 109.45934 * 295.06793 * 10 9 7 29 29 H 0.97002 * 119.99811 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.47073 * 59.99988 * 9 7 2 31 31 H 1.09008 * 109.46735 * 299.99813 * 9 7 2 32 32 H 1.09007 * 109.46044 * 55.02046 * 10 9 7 33 33 H 1.08998 * 109.49664 * 61.43423 * 11 10 9 34 34 H 1.08994 * 109.52375 * 301.35302 * 11 10 9 35 35 H 1.08996 * 109.58802 * 185.58258 * 12 11 10 36 36 H 1.08995 * 109.70707 * 65.22270 * 12 11 10 37 37 H 1.08001 * 125.95814 * 0.05127 * 17 16 14 38 38 H 1.08006 * 120.45712 * 359.97438 * 21 20 19 39 39 H 1.07988 * 119.58672 * 180.24721 * 22 21 20 40 40 H 1.08004 * 119.59004 * 180.02562 * 24 23 22 41 41 H 1.07998 * 120.45806 * 180.02562 * 25 24 23 42 42 H 1.08002 * 126.31755 * 180.24213 * 26 19 18 43 43 H 1.08998 * 109.58824 * 65.92263 * 27 13 12 44 44 H 1.08999 * 109.58521 * 186.35033 * 27 13 12 45 45 H 1.09003 * 109.49306 * 298.56554 * 28 10 9 46 46 H 1.09002 * 109.49906 * 58.65593 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0018 11 6 1.4837 -4.9837 0.1277 12 6 2.4841 -6.1433 0.1635 13 7 3.3510 -6.0567 -1.0197 14 6 3.4935 -7.1123 -1.8454 15 8 2.8147 -8.1080 -1.6820 16 6 4.4721 -7.0598 -2.9468 17 6 5.6774 -6.3213 -2.9637 18 7 6.2681 -6.5368 -4.1066 19 7 5.4772 -7.4032 -4.8697 20 6 5.7768 -7.8647 -6.1561 21 6 4.9181 -8.7385 -6.8198 22 6 5.2467 -9.1663 -8.0901 23 7 6.3621 -8.7667 -8.6707 24 6 7.2031 -7.9445 -8.0729 25 6 6.9444 -7.4673 -6.8040 26 6 4.3826 -7.7222 -4.1543 27 6 4.0646 -4.7994 -1.2820 28 6 3.0422 -3.6530 -1.3046 29 1 -0.4850 0.8401 -0.0004 30 1 0.6247 -2.5571 -0.8896 31 1 0.6240 -2.5567 0.8904 32 1 2.9283 -3.5550 0.8444 33 1 0.8186 -5.1032 -0.7276 34 1 0.8976 -4.9803 1.0466 35 1 1.9456 -7.0909 0.1531 36 1 3.0907 -6.0777 1.0666 37 1 6.0472 -5.6925 -2.1673 38 1 4.0059 -9.0732 -6.3483 39 1 4.5850 -9.8403 -8.6135 40 1 8.1055 -7.6410 -8.5829 41 1 7.6369 -6.7942 -6.3205 42 1 3.5819 -8.3758 -4.4674 43 1 4.7972 -4.6238 -0.4943 44 1 4.5691 -4.8599 -2.2463 45 1 2.3623 -3.7850 -2.1464 46 1 3.5656 -2.7021 -1.4049 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578361514.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:16 Heat of formation + Delta-G solvation = 81.915500 kcal Electronic energy + Delta-G solvation = -28403.160557 eV Core-core repulsion = 24487.518998 eV Total energy + Delta-G solvation = -3915.641560 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.24125 -40.48482 -39.60312 -37.28277 -34.96409 -33.99098 -32.23993 -32.02269 -31.17365 -30.88163 -30.01004 -28.06602 -25.39201 -24.62139 -24.23933 -22.96694 -22.65089 -21.47522 -21.22997 -19.96300 -19.28885 -18.38374 -16.99323 -16.51347 -16.33254 -16.20076 -16.09906 -15.87761 -15.46070 -14.95502 -14.68361 -14.54634 -14.27745 -14.13880 -13.87785 -13.60578 -13.43587 -13.20651 -12.82872 -12.77759 -12.35242 -12.21658 -11.82060 -11.46832 -11.34787 -11.22656 -10.99731 -10.81311 -10.73622 -10.46872 -10.16414 -10.13101 -9.89330 -9.79680 -9.75232 -9.64729 -9.28735 -8.99972 -8.87884 -8.39543 -8.35225 -6.02649 -4.04699 0.13272 0.53477 1.53618 1.67701 1.85973 2.97046 3.25182 3.27924 3.30056 3.36118 3.38562 3.81361 3.91259 4.11540 4.33732 4.38970 4.42706 4.56814 4.63235 4.84040 4.94620 5.06331 5.13094 5.22446 5.22888 5.32152 5.38335 5.45647 5.47241 5.51613 5.64029 5.72315 5.93500 5.96485 5.97686 6.03691 6.34775 6.36206 6.44837 6.49578 6.66034 6.92844 6.96574 7.01868 7.08161 7.41034 7.51468 7.64440 7.78796 7.97154 8.22256 8.39226 9.02100 9.59316 11.08611 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013894 B = 0.002338 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.708147 B =11974.978104 C =13197.957461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.516 4.516 8 H 0.056 0.944 9 C 0.027 3.973 10 C -0.081 4.081 11 C -0.129 4.129 12 C 0.114 3.886 13 N -0.597 5.597 14 C 0.592 3.408 15 O -0.552 6.552 16 C -0.264 4.264 17 C 0.095 3.905 18 N -0.286 5.286 19 N -0.321 5.321 20 C 0.206 3.794 21 C -0.196 4.196 22 C 0.129 3.871 23 N -0.493 5.493 24 C 0.125 3.875 25 C -0.172 4.172 26 C 0.122 3.878 27 C 0.091 3.909 28 C -0.118 4.118 29 H 0.259 0.741 30 H 0.015 0.985 31 H 0.016 0.984 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.206 0.794 38 H 0.145 0.855 39 H 0.168 0.832 40 H 0.167 0.833 41 H 0.151 0.849 42 H 0.192 0.808 43 H 0.070 0.930 44 H 0.085 0.915 45 H 0.058 0.942 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.728 -17.726 -11.656 24.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.716 3.284 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.554 4.554 8 H 0.075 0.925 9 C -0.010 4.010 10 C -0.100 4.100 11 C -0.167 4.167 12 C -0.008 4.008 13 N -0.329 5.329 14 C 0.380 3.620 15 O -0.431 6.431 16 C -0.277 4.277 17 C -0.094 4.094 18 N -0.103 5.103 19 N -0.094 5.094 20 C 0.105 3.895 21 C -0.219 4.219 22 C -0.028 4.028 23 N -0.203 5.203 24 C -0.032 4.032 25 C -0.194 4.194 26 C -0.023 4.023 27 C -0.032 4.032 28 C -0.156 4.156 29 H 0.069 0.931 30 H 0.033 0.967 31 H 0.034 0.966 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.084 0.916 37 H 0.222 0.778 38 H 0.163 0.837 39 H 0.185 0.815 40 H 0.184 0.816 41 H 0.169 0.831 42 H 0.209 0.791 43 H 0.088 0.912 44 H 0.103 0.897 45 H 0.077 0.923 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 13.447 -18.183 -13.174 26.173 hybrid contribution -0.571 1.357 1.493 2.096 sum 12.876 -16.827 -11.681 24.195 Atomic orbital electron populations 1.69975 1.06055 1.26432 1.50974 1.25031 0.94803 0.99211 0.95483 0.86597 0.80116 0.84080 0.77564 1.19740 1.21123 1.21081 1.21269 0.92947 0.90930 1.50239 0.92534 1.19129 0.93624 0.91033 0.97214 1.21199 0.98004 0.94681 0.96078 1.22023 0.97634 0.94758 1.02325 1.21700 0.92530 1.00489 0.86063 1.47937 1.46410 1.12443 1.26117 1.17148 0.81406 0.82763 0.80645 1.90757 1.47025 1.32401 1.72925 1.20414 1.00545 1.08834 0.97944 1.24586 0.92509 0.96704 0.95609 1.77293 1.17263 1.10666 1.05063 1.45557 1.16390 1.35731 1.11723 1.17826 0.95456 0.94537 0.81695 1.21959 1.01632 1.00565 0.97733 1.22696 0.93247 0.96123 0.90742 1.67726 1.03752 1.11916 1.36882 1.22784 0.97988 0.91543 0.90883 1.21982 0.97141 1.03352 0.96908 1.22992 0.90905 0.97462 0.90935 1.22444 0.95612 0.83753 1.01349 1.21971 0.97489 0.97012 0.99101 0.93097 0.96669 0.96559 0.92269 0.92032 0.91054 0.89532 0.91599 0.77760 0.83722 0.81519 0.81610 0.83076 0.79090 0.91190 0.89696 0.92282 0.89674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.52 -13.71 8.39 -34.44 -0.29 -14.00 16 8 H 0.06 1.44 7.05 -52.49 -0.37 1.07 16 9 C 0.03 0.66 4.45 -27.88 -0.12 0.53 16 10 C -0.08 -1.51 2.10 -90.58 -0.19 -1.70 16 11 C -0.13 -2.10 5.36 -26.61 -0.14 -2.24 16 12 C 0.11 1.61 6.44 -3.71 -0.02 1.59 16 13 N -0.60 -8.33 2.97 -173.77 -0.52 -8.84 16 14 C 0.59 8.59 7.62 -12.52 -0.10 8.50 16 15 O -0.55 -9.52 16.44 5.28 0.09 -9.43 16 16 C -0.26 -3.19 5.55 -105.04 -0.58 -3.78 16 17 C 0.09 1.02 9.58 -16.95 -0.16 0.85 16 18 N -0.29 -3.27 11.87 30.88 0.37 -2.91 16 19 N -0.32 -3.41 3.76 -10.03 -0.04 -3.45 16 20 C 0.21 1.88 6.73 -83.36 -0.56 1.32 16 21 C -0.20 -1.39 9.52 -39.26 -0.37 -1.76 16 22 C 0.13 0.87 11.18 -17.59 -0.20 0.67 16 23 N -0.49 -4.12 10.36 -13.32 -0.14 -4.26 16 24 C 0.12 0.90 11.17 -17.59 -0.20 0.70 16 25 C -0.17 -1.41 9.73 -39.26 -0.38 -1.79 16 26 C 0.12 1.30 10.75 -16.42 -0.18 1.12 16 27 C 0.09 1.16 5.23 -3.48 -0.02 1.14 16 28 C -0.12 -1.95 5.21 -26.39 -0.14 -2.09 16 29 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 30 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 32 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.09 1.26 7.00 -51.93 -0.36 0.90 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.21 1.69 6.44 -52.49 -0.34 1.35 16 38 H 0.15 0.72 6.85 -52.48 -0.36 0.36 16 39 H 0.17 0.63 8.06 -52.49 -0.42 0.21 16 40 H 0.17 0.73 8.06 -52.48 -0.42 0.30 16 41 H 0.15 1.18 7.78 -52.49 -0.41 0.77 16 42 H 0.19 1.54 7.09 -52.49 -0.37 1.16 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.09 0.95 4.16 -51.93 -0.22 0.74 16 45 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 46 H 0.08 1.50 6.91 -51.93 -0.36 1.14 16 LS Contribution 376.83 15.07 5.68 5.68 Total: -1.00 -33.77 376.83 -8.74 -42.51 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -6.15 Total: -0.24 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -3.75 Total: -9.47 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: 0.41 Total: -45.06 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.09 Total: -9.43 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.77 -8.74 -42.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578361514.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.430 kcal (2) G-P(sol) polarization free energy of solvation -33.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds