Wall clock time and date at job start Tue Mar 31 2020 23:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 120.00209 * 2 1 4 4 H 1.48498 * 109.47078 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46599 * 299.99912 * 3 2 1 6 6 H 1.48498 * 109.47005 * 59.99654 * 3 2 1 7 7 C 1.37877 * 119.99670 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00017 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00225 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47329 * 180.02562 * 9 7 2 11 11 C 1.53036 * 109.46050 * 174.99742 * 10 9 7 12 12 C 1.53194 * 109.31169 * 181.38677 * 11 10 9 13 13 N 1.46933 * 108.77339 * 305.36214 * 12 11 10 14 14 C 1.34770 * 120.63000 * 233.58499 * 13 12 11 15 15 O 1.21603 * 120.00442 * 6.39292 * 14 13 12 16 16 C 1.47431 * 119.99873 * 186.38755 * 14 13 12 17 17 C 1.41368 * 126.40664 * 29.19556 * 16 14 13 18 18 N 1.30444 * 108.07622 * 179.76259 * 17 16 14 19 19 N 1.39940 * 108.91222 * 0.40712 * 18 17 16 20 20 C 1.39915 * 125.77209 * 179.85101 * 19 18 17 21 21 C 1.39327 * 120.85782 * 179.41414 * 20 19 18 22 22 C 1.38008 * 119.08672 * 179.72830 * 21 20 19 23 23 N 1.31938 * 120.82525 * 0.55447 * 22 21 20 24 24 C 1.31936 * 121.88830 * 359.71768 * 23 22 21 25 25 C 1.38009 * 120.83295 * 0.02562 * 24 23 22 26 26 C 1.34597 * 108.45224 * 359.58376 * 19 18 17 27 27 C 1.46928 * 118.73610 * 53.86547 * 13 12 11 28 28 C 1.53040 * 109.45934 * 295.06793 * 10 9 7 29 29 H 0.97002 * 119.99811 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.47073 * 59.99988 * 9 7 2 31 31 H 1.09008 * 109.46735 * 299.99813 * 9 7 2 32 32 H 1.09007 * 109.46044 * 55.02046 * 10 9 7 33 33 H 1.08998 * 109.49664 * 61.43423 * 11 10 9 34 34 H 1.08994 * 109.52375 * 301.35302 * 11 10 9 35 35 H 1.08996 * 109.58802 * 185.58258 * 12 11 10 36 36 H 1.08995 * 109.70707 * 65.22270 * 12 11 10 37 37 H 1.08001 * 125.95814 * 0.05127 * 17 16 14 38 38 H 1.08006 * 120.45712 * 359.97438 * 21 20 19 39 39 H 1.07988 * 119.58672 * 180.24721 * 22 21 20 40 40 H 1.08004 * 119.59004 * 180.02562 * 24 23 22 41 41 H 1.07998 * 120.45806 * 180.02562 * 25 24 23 42 42 H 1.08002 * 126.31755 * 180.24213 * 26 19 18 43 43 H 1.08998 * 109.58824 * 65.92263 * 27 13 12 44 44 H 1.08999 * 109.58521 * 186.35033 * 27 13 12 45 45 H 1.09003 * 109.49306 * 298.56554 * 28 10 9 46 46 H 1.09002 * 109.49906 * 58.65593 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0018 11 6 1.4837 -4.9837 0.1277 12 6 2.4841 -6.1433 0.1635 13 7 3.3510 -6.0567 -1.0197 14 6 3.4935 -7.1123 -1.8454 15 8 2.8147 -8.1080 -1.6820 16 6 4.4721 -7.0598 -2.9468 17 6 5.6774 -6.3213 -2.9637 18 7 6.2681 -6.5368 -4.1066 19 7 5.4772 -7.4032 -4.8697 20 6 5.7768 -7.8647 -6.1561 21 6 4.9181 -8.7385 -6.8198 22 6 5.2467 -9.1663 -8.0901 23 7 6.3621 -8.7667 -8.6707 24 6 7.2031 -7.9445 -8.0729 25 6 6.9444 -7.4673 -6.8040 26 6 4.3826 -7.7222 -4.1543 27 6 4.0646 -4.7994 -1.2820 28 6 3.0422 -3.6530 -1.3046 29 1 -0.4850 0.8401 -0.0004 30 1 0.6247 -2.5571 -0.8896 31 1 0.6240 -2.5567 0.8904 32 1 2.9283 -3.5550 0.8444 33 1 0.8186 -5.1032 -0.7276 34 1 0.8976 -4.9803 1.0466 35 1 1.9456 -7.0909 0.1531 36 1 3.0907 -6.0777 1.0666 37 1 6.0472 -5.6925 -2.1673 38 1 4.0059 -9.0732 -6.3483 39 1 4.5850 -9.8403 -8.6135 40 1 8.1055 -7.6410 -8.5829 41 1 7.6369 -6.7942 -6.3205 42 1 3.5819 -8.3758 -4.4674 43 1 4.7972 -4.6238 -0.4943 44 1 4.5691 -4.8599 -2.2463 45 1 2.3623 -3.7850 -2.1464 46 1 3.5656 -2.7021 -1.4049 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578361514.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:15 Heat of formation + Delta-G solvation = 61.903911 kcal Electronic energy + Delta-G solvation = -28404.028325 eV Core-core repulsion = 24487.518998 eV Total energy + Delta-G solvation = -3916.509327 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.02885 -41.21593 -40.59926 -38.60140 -35.86527 -35.44253 -33.97925 -32.62871 -32.31841 -31.60905 -30.93855 -29.74388 -26.69652 -25.63857 -24.99062 -24.17115 -23.86074 -22.45634 -22.21896 -21.18402 -20.33275 -19.36065 -18.39993 -17.84548 -17.22279 -17.01515 -16.87975 -16.73122 -16.52509 -16.23706 -16.00213 -15.42707 -15.15376 -14.93788 -14.82374 -14.77486 -14.59620 -14.52737 -14.15367 -14.03921 -13.69655 -13.32512 -12.98819 -12.93708 -12.68136 -12.51739 -12.32541 -12.23923 -12.20322 -11.97322 -11.70950 -11.33807 -11.13735 -10.86337 -10.81554 -10.68665 -10.54417 -10.51016 -10.31776 -9.75158 -9.48913 -8.15176 -6.24318 -0.54436 0.00994 0.72711 0.95127 1.05796 1.41646 1.42794 1.54748 1.92019 2.24711 2.43705 2.72665 3.09720 3.18937 3.43074 3.48182 3.64346 3.73277 3.81737 3.93734 4.01401 4.07841 4.14389 4.16636 4.20329 4.37882 4.41597 4.44677 4.58211 4.64007 4.70638 4.76067 4.84062 4.86097 4.92787 5.00126 5.12360 5.20501 5.34685 5.36944 5.42473 5.42789 5.56925 5.62394 5.75627 5.84504 5.92056 6.23024 6.30534 6.42808 6.87427 6.93348 7.12448 7.44524 8.97035 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013894 B = 0.002338 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.708147 B =11974.978104 C =13197.957461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.006 4.006 3 Si 0.959 3.041 4 H -0.255 1.255 5 H -0.285 1.285 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.069 0.931 9 C 0.031 3.969 10 C -0.073 4.073 11 C -0.122 4.122 12 C 0.121 3.879 13 N -0.599 5.599 14 C 0.594 3.406 15 O -0.585 6.585 16 C -0.287 4.287 17 C 0.099 3.901 18 N -0.304 5.304 19 N -0.320 5.320 20 C 0.178 3.822 21 C -0.192 4.192 22 C 0.127 3.873 23 N -0.513 5.513 24 C 0.123 3.877 25 C -0.178 4.178 26 C 0.129 3.871 27 C 0.101 3.899 28 C -0.113 4.113 29 H 0.260 0.740 30 H -0.019 1.019 31 H -0.013 1.013 32 H 0.068 0.932 33 H 0.043 0.957 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.228 0.772 38 H 0.165 0.835 39 H 0.196 0.804 40 H 0.190 0.810 41 H 0.151 0.849 42 H 0.213 0.787 43 H 0.098 0.902 44 H 0.104 0.896 45 H 0.039 0.961 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.093 -18.313 -12.356 26.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.203 4.203 3 Si 0.784 3.216 4 H -0.179 1.179 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.088 0.912 9 C -0.006 4.006 10 C -0.092 4.092 11 C -0.160 4.160 12 C -0.001 4.001 13 N -0.330 5.330 14 C 0.384 3.616 15 O -0.467 6.467 16 C -0.301 4.301 17 C -0.090 4.090 18 N -0.121 5.121 19 N -0.092 5.092 20 C 0.078 3.922 21 C -0.215 4.215 22 C -0.030 4.030 23 N -0.222 5.222 24 C -0.033 4.033 25 C -0.200 4.200 26 C -0.018 4.018 27 C -0.020 4.020 28 C -0.151 4.151 29 H 0.069 0.931 30 H 0.000 1.000 31 H 0.005 0.995 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.244 0.756 38 H 0.183 0.817 39 H 0.213 0.787 40 H 0.207 0.793 41 H 0.169 0.831 42 H 0.229 0.771 43 H 0.116 0.884 44 H 0.122 0.878 45 H 0.058 0.942 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 15.851 -18.770 -13.891 28.223 hybrid contribution -1.359 1.486 1.621 2.585 sum 14.492 -17.284 -12.270 25.677 Atomic orbital electron populations 1.70125 1.07931 1.27356 1.52570 1.25981 0.95627 1.03324 0.95331 0.85482 0.79542 0.79231 0.77311 1.17865 1.21079 1.20945 1.21716 0.93713 0.91716 1.48909 0.91237 1.19036 0.94118 0.93307 0.94133 1.21048 0.97048 0.93364 0.97703 1.21909 0.97845 0.94621 1.01665 1.21613 0.92367 0.98905 0.87222 1.47988 1.46324 1.12768 1.25951 1.17412 0.81238 0.82226 0.80727 1.90735 1.48536 1.33615 1.73783 1.20278 1.00997 1.10819 0.98013 1.24905 0.91779 0.96433 0.95846 1.77262 1.17998 1.11379 1.05444 1.45668 1.16117 1.35344 1.12104 1.18195 0.96609 0.95864 0.81517 1.22232 1.01902 0.99617 0.97726 1.23204 0.93102 0.95963 0.90685 1.67786 1.04520 1.12417 1.37524 1.23165 0.98592 0.90958 0.90569 1.22084 0.97052 1.03534 0.97327 1.23352 0.91123 0.96789 0.90506 1.22451 0.94525 0.81448 1.03615 1.21858 0.97788 0.98507 0.96984 0.93146 1.00026 0.99510 0.91329 0.93857 0.90880 0.89858 0.89307 0.75567 0.81717 0.78733 0.79273 0.83124 0.77067 0.88380 0.87770 0.94223 0.90552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.81 13.29 21.45 0.28 -56.52 16 2 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 3 Si 0.96 43.13 29.54 68.60 2.03 45.16 16 4 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 7 C -0.52 -28.01 8.39 25.60 0.21 -27.79 16 8 H 0.07 3.47 7.05 -2.91 -0.02 3.45 16 9 C 0.03 1.57 4.45 29.85 0.13 1.70 16 10 C -0.07 -2.71 2.10 -10.77 -0.02 -2.73 16 11 C -0.12 -3.98 5.36 30.67 0.16 -3.81 16 12 C 0.12 3.26 6.44 86.36 0.56 3.81 16 13 N -0.60 -15.69 2.97 -821.94 -2.44 -18.13 16 14 C 0.59 16.47 7.62 86.67 0.66 17.13 16 15 O -0.58 -19.76 16.44 -4.04 -0.07 -19.83 16 16 C -0.29 -6.49 5.55 -20.14 -0.11 -6.60 16 17 C 0.10 1.91 9.58 85.67 0.82 2.73 16 18 N -0.30 -6.47 11.87 -56.22 -0.67 -7.13 16 19 N -0.32 -6.32 3.76 -185.66 -0.70 -7.02 16 20 C 0.18 3.01 6.73 38.37 0.26 3.27 16 21 C -0.19 -2.35 9.52 22.48 0.21 -2.13 16 22 C 0.13 1.44 11.18 84.62 0.95 2.39 16 23 N -0.51 -7.65 10.36 -196.07 -2.03 -9.68 16 24 C 0.12 1.59 11.17 84.62 0.95 2.54 16 25 C -0.18 -2.71 9.73 22.48 0.22 -2.49 16 26 C 0.13 2.52 10.75 84.22 0.91 3.43 16 27 C 0.10 2.34 5.23 86.51 0.45 2.80 16 28 C -0.11 -3.67 5.21 30.82 0.16 -3.51 16 29 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 30 H -0.02 -1.06 8.14 -2.39 -0.02 -1.07 16 31 H -0.01 -0.75 8.14 -2.38 -0.02 -0.77 16 32 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 33 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.08 2.35 7.00 -2.39 -0.02 2.33 16 36 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.23 3.03 6.44 -2.91 -0.02 3.01 16 38 H 0.17 1.22 6.85 -2.91 -0.02 1.20 16 39 H 0.20 0.93 8.06 -2.92 -0.02 0.91 16 40 H 0.19 1.32 8.06 -2.91 -0.02 1.29 16 41 H 0.15 2.23 7.78 -2.91 -0.02 2.20 16 42 H 0.21 3.01 7.09 -2.91 -0.02 2.99 16 43 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.10 2.06 4.16 -2.39 -0.01 2.05 16 45 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.08 2.61 6.91 -2.39 -0.02 2.59 16 Total: -1.00 -74.82 376.83 4.39 -70.43 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: 1.00 Total: 11.87 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: 6.98 Total: -9.15 kcal Atomic # 7 Polarization: -92.94 SS G_CDS: -5.55 Total: -98.49 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.07 Total: -19.83 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -74.82 4.39 -70.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578361514.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.333 kcal (2) G-P(sol) polarization free energy of solvation -74.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds