Wall clock time and date at job start Tue Mar 31 2020 22:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99576 * 2 1 4 4 H 1.48498 * 109.46875 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47327 * 299.99942 * 3 2 1 6 6 H 1.48504 * 109.47094 * 60.00455 * 3 2 1 7 7 C 1.37875 * 120.00204 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99730 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99930 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47100 * 180.02562 * 9 7 2 11 11 C 1.46501 * 120.00136 * 86.85953 * 10 9 7 12 12 C 1.50699 * 109.47178 * 270.00255 * 11 10 9 13 13 C 1.38230 * 119.61955 * 94.97914 * 12 11 10 14 14 C 1.38627 * 119.16024 * 179.79191 * 13 12 11 15 15 C 1.38676 * 118.42112 * 0.46807 * 14 13 12 16 16 C 1.38177 * 119.16190 * 359.50978 * 15 14 13 17 17 N 1.31861 * 119.61737 * 274.99446 * 12 11 10 18 18 C 1.34775 * 120.00396 * 266.86055 * 10 9 7 19 19 O 1.21601 * 120.00312 * 175.73949 * 18 10 9 20 20 C 1.47430 * 119.99522 * 355.74012 * 18 10 9 21 21 C 1.41292 * 126.41170 * 208.73423 * 20 18 10 22 22 N 1.30452 * 108.02060 * 179.87808 * 21 20 18 23 23 N 1.39936 * 108.89612 * 0.38428 * 22 21 20 24 24 C 1.46499 * 125.75221 * 179.72933 * 23 22 21 25 25 C 1.52995 * 109.47257 * 305.02618 * 24 23 22 26 26 C 1.53002 * 117.49871 * 243.74628 * 25 24 23 27 27 C 1.53001 * 117.49894 * 175.08641 * 25 24 23 28 28 C 1.34261 * 108.49286 * 359.75302 * 23 22 21 29 29 H 0.97001 * 120.00149 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.47512 * 59.99836 * 9 7 2 31 31 H 1.09002 * 109.47068 * 299.99514 * 9 7 2 32 32 H 1.08996 * 109.47434 * 150.00249 * 11 10 9 33 33 H 1.09002 * 109.46984 * 30.00108 * 11 10 9 34 34 H 1.07997 * 120.41855 * 359.97438 * 13 12 11 35 35 H 1.07999 * 120.79216 * 180.22830 * 14 13 12 36 36 H 1.07995 * 120.41631 * 179.77857 * 15 14 13 37 37 H 1.08000 * 119.61916 * 180.25124 * 16 15 14 38 38 H 1.07998 * 125.99111 * 359.97438 * 21 20 18 39 39 H 1.09004 * 109.46795 * 65.02365 * 24 23 22 40 40 H 1.09001 * 109.47014 * 185.01944 * 24 23 22 41 41 H 1.08996 * 115.55470 * 29.41324 * 25 24 23 42 42 H 1.09003 * 117.49898 * 0.02562 * 26 25 24 43 43 H 1.08995 * 117.50255 * 145.01701 * 26 25 24 44 44 H 1.09006 * 117.50124 * 214.97707 * 27 25 24 45 45 H 1.09003 * 117.50057 * 359.97438 * 27 25 24 46 46 H 1.07991 * 126.28812 * 179.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.7320 -4.1242 1.2663 12 6 3.9915 -3.3776 1.6229 13 6 3.9228 -2.2868 2.4691 14 6 5.0880 -1.6097 2.7943 15 6 6.2828 -2.0510 2.2458 16 6 6.2738 -3.1495 1.4076 17 7 5.1464 -3.7723 1.1237 18 6 2.5925 -4.1664 -1.1659 19 8 3.4404 -5.0380 -1.1716 20 6 1.9904 -3.7153 -2.4338 21 6 1.8255 -4.4876 -3.6055 22 7 1.2532 -3.7372 -4.5062 23 7 1.0360 -2.4652 -3.9649 24 6 0.4201 -1.3327 -4.6607 25 6 1.1771 -1.0608 -5.9621 26 6 1.8940 0.2844 -6.0946 27 6 0.6164 0.0155 -6.8939 28 6 1.4876 -2.4577 -2.7005 29 1 -0.4850 0.8400 0.0004 30 1 0.6241 -2.5567 -0.8902 31 1 0.6248 -2.5571 0.8897 32 1 2.9555 -5.1861 1.1643 33 1 1.9908 -3.9828 2.0529 34 1 2.9739 -1.9680 2.8742 35 1 5.0653 -0.7564 3.4559 36 1 7.2092 -1.5452 2.4744 37 1 7.2006 -3.5019 0.9796 38 1 2.1200 -5.5188 -3.7326 39 1 -0.6199 -1.5677 -4.8876 40 1 0.4623 -0.4488 -4.0242 41 1 1.6479 -1.9294 -6.4224 42 1 1.8266 0.9755 -5.2544 43 1 2.8362 0.3008 -6.6423 44 1 0.7188 -0.1449 -7.9672 45 1 -0.2920 0.5296 -6.5799 46 1 1.4625 -1.6213 -2.0179 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601037173.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:31 Heat of formation + Delta-G solvation = 116.219005 kcal Electronic energy + Delta-G solvation = -29922.889859 eV Core-core repulsion = 26008.735811 eV Total energy + Delta-G solvation = -3914.154048 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.80628 -39.73459 -38.27624 -37.38820 -35.07892 -33.00268 -32.41717 -31.95205 -31.39386 -29.62856 -27.63241 -27.05279 -25.79483 -23.20251 -22.93178 -22.46092 -22.11472 -21.40091 -20.94951 -19.91711 -18.57774 -16.88709 -16.58395 -16.37196 -16.08768 -15.54062 -15.33334 -15.13004 -15.06597 -14.69889 -14.49436 -14.00419 -13.80337 -13.49329 -13.23966 -12.89448 -12.81433 -12.62550 -12.42638 -12.35665 -12.07960 -11.62797 -11.59255 -11.51435 -11.26431 -11.21755 -11.04750 -10.74481 -10.51301 -10.34643 -10.24886 -10.02877 -9.86164 -9.38283 -9.01987 -8.95451 -8.88891 -8.75513 -8.45700 -7.93117 -7.66387 -6.36836 -4.44873 1.56561 1.79951 2.34047 2.84215 2.90243 3.05275 3.16677 3.23199 3.73734 3.97861 4.12574 4.21019 4.49038 4.55868 4.80842 4.82634 4.88771 4.92679 5.13794 5.21583 5.25264 5.30503 5.49212 5.52816 5.57783 5.58485 5.62237 5.77635 5.80200 5.81108 5.98104 6.02021 6.03990 6.16162 6.22494 6.28346 6.35324 6.46196 6.60069 6.65650 6.71154 7.07182 7.10816 7.18340 7.49713 7.56496 7.62518 7.91026 8.17193 8.39414 8.57988 8.71237 9.17394 9.28436 10.66576 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010057 B = 0.004554 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2783.345143 B = 6146.477908 C = 7526.856196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.067 3.933 3 Si 0.884 3.116 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.532 4.532 8 H 0.065 0.935 9 C 0.223 3.777 10 N -0.593 5.593 11 C 0.175 3.825 12 C 0.126 3.874 13 C -0.133 4.133 14 C -0.086 4.086 15 C -0.183 4.183 16 C 0.087 3.913 17 N -0.457 5.457 18 C 0.595 3.405 19 O -0.554 6.554 20 C -0.295 4.295 21 C 0.095 3.905 22 N -0.321 5.321 23 N -0.367 5.367 24 C 0.165 3.835 25 C -0.165 4.165 26 C -0.179 4.179 27 C -0.172 4.172 28 C 0.117 3.883 29 H 0.267 0.733 30 H 0.050 0.950 31 H 0.035 0.965 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.136 0.864 35 H 0.126 0.874 36 H 0.124 0.876 37 H 0.146 0.854 38 H 0.183 0.817 39 H 0.087 0.913 40 H 0.101 0.899 41 H 0.117 0.883 42 H 0.098 0.902 43 H 0.094 0.906 44 H 0.096 0.904 45 H 0.097 0.903 46 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.056 0.755 -2.274 3.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.137 4.137 3 Si 0.711 3.289 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.571 4.571 8 H 0.083 0.917 9 C 0.103 3.897 10 N -0.324 5.324 11 C 0.051 3.949 12 C -0.014 4.014 13 C -0.154 4.154 14 C -0.112 4.112 15 C -0.203 4.203 16 C -0.071 4.071 17 N -0.166 5.166 18 C 0.384 3.616 19 O -0.433 6.433 20 C -0.310 4.310 21 C -0.093 4.093 22 N -0.141 5.141 23 N -0.146 5.146 24 C 0.044 3.956 25 C -0.184 4.184 26 C -0.216 4.216 27 C -0.209 4.209 28 C -0.032 4.032 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.154 0.846 35 H 0.144 0.856 36 H 0.142 0.858 37 H 0.163 0.837 38 H 0.200 0.800 39 H 0.105 0.895 40 H 0.119 0.881 41 H 0.135 0.865 42 H 0.117 0.883 43 H 0.113 0.887 44 H 0.114 0.886 45 H 0.115 0.885 46 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 1.794 -0.142 -4.107 4.484 hybrid contribution 0.802 2.139 1.446 2.703 sum 2.596 1.997 -2.661 4.220 Atomic orbital electron populations 1.69948 1.05750 1.27371 1.49122 1.24957 0.94806 0.99051 0.94896 0.86627 0.80626 0.83556 0.78068 1.19464 1.20733 1.20601 1.21629 0.94039 0.90299 1.51095 0.91717 1.19825 0.87807 0.82759 0.99299 1.47919 1.45091 1.35500 1.03881 1.20057 0.90288 0.97733 0.86865 1.21688 0.93896 0.93802 0.91986 1.21992 0.99167 0.95578 0.98616 1.21482 0.92636 0.98686 0.98431 1.22021 0.98756 0.99092 1.00413 1.22647 0.96478 0.92749 0.95210 1.67597 0.98136 1.30542 1.20349 1.17282 0.80760 0.80976 0.82591 1.90708 1.32161 1.33353 1.87124 1.20269 1.17968 0.95422 0.97335 1.23810 0.95969 0.99613 0.89883 1.76954 1.23807 0.90223 1.23134 1.48387 1.46638 1.09400 1.10160 1.21264 0.96120 0.86108 0.92123 1.22569 1.04007 0.94274 0.97543 1.23121 0.96440 0.98867 1.03198 1.22962 0.97968 1.02314 0.97704 1.25042 0.90947 1.01127 0.86076 0.92360 0.93237 0.94664 0.89404 0.89552 0.84587 0.85576 0.85771 0.83672 0.79989 0.89458 0.88084 0.86529 0.88348 0.88740 0.88584 0.88466 0.75949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -21.41 13.29 55.43 0.74 -20.68 16 2 C 0.07 1.56 5.17 -17.82 -0.09 1.47 16 3 Si 0.88 18.81 29.54 -169.99 -5.02 13.79 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 7 C -0.53 -12.34 6.78 -34.44 -0.23 -12.57 16 8 H 0.06 1.63 7.38 -52.49 -0.39 1.24 16 9 C 0.22 4.91 4.72 -5.20 -0.02 4.88 16 10 N -0.59 -12.48 2.44 -177.71 -0.43 -12.92 16 11 C 0.17 3.29 5.73 -5.19 -0.03 3.26 16 12 C 0.13 2.39 6.06 -82.58 -0.50 1.89 16 13 C -0.13 -2.31 8.99 -39.44 -0.35 -2.66 16 14 C -0.09 -1.33 10.18 -39.28 -0.40 -1.73 16 15 C -0.18 -2.70 10.11 -39.44 -0.40 -3.10 16 16 C 0.09 1.44 11.18 -17.55 -0.20 1.25 16 17 N -0.46 -9.08 10.27 -9.47 -0.10 -9.18 16 18 C 0.59 13.30 7.62 -12.52 -0.10 13.20 16 19 O -0.55 -13.43 16.65 5.28 0.09 -13.35 16 20 C -0.30 -6.20 5.64 -105.07 -0.59 -6.80 16 21 C 0.09 1.81 11.94 -16.98 -0.20 1.60 16 22 N -0.32 -6.00 12.14 30.86 0.37 -5.63 16 23 N -0.37 -6.66 3.65 -60.81 -0.22 -6.88 16 24 C 0.17 2.40 6.77 -4.04 -0.03 2.38 16 25 C -0.17 -2.14 5.92 -90.62 -0.54 -2.68 16 26 C -0.18 -2.10 10.18 -26.69 -0.27 -2.38 16 27 C -0.17 -1.77 10.25 -26.69 -0.27 -2.04 16 28 C 0.12 2.38 9.00 -16.56 -0.15 2.23 16 29 H 0.27 6.20 8.31 -40.82 -0.34 5.87 16 30 H 0.05 1.14 4.74 -51.93 -0.25 0.89 16 31 H 0.04 0.80 7.93 -51.93 -0.41 0.39 16 32 H 0.09 1.67 7.48 -51.93 -0.39 1.28 16 33 H 0.09 1.40 7.82 -51.93 -0.41 0.99 16 34 H 0.14 2.25 8.06 -52.49 -0.42 1.83 16 35 H 0.13 1.62 8.06 -52.49 -0.42 1.19 16 36 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 37 H 0.15 2.02 8.06 -52.49 -0.42 1.60 16 38 H 0.18 3.02 8.06 -52.49 -0.42 2.60 16 39 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.10 1.44 7.80 -51.93 -0.40 1.03 16 41 H 0.12 1.68 7.90 -51.93 -0.41 1.27 16 42 H 0.10 1.17 8.03 -51.93 -0.42 0.76 16 43 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.22 4.88 4.04 -52.49 -0.21 4.67 16 LS Contribution 389.83 15.07 5.87 5.87 Total: -1.00 -29.21 389.83 -9.30 -38.52 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -6.22 Total: 12.24 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -4.38 Total: -1.80 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: 0.36 Total: -55.28 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.09 Total: -13.35 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.02 Total: 13.79 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.21 -9.30 -38.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601037173.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.735 kcal (2) G-P(sol) polarization free energy of solvation -29.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds