Wall clock time and date at job start Tue Mar 31 2020 23:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38070 * 126.29048 * 2 1 4 4 C 1.47391 * 126.42012 * 0.02562 * 3 2 1 5 5 O 1.21597 * 119.99836 * 41.63695 * 4 3 2 6 6 N 1.34776 * 119.99803 * 221.63159 * 4 3 2 7 7 C 1.46874 * 120.41904 * 5.75543 * 6 4 3 8 8 C 1.53436 * 107.87160 * 224.85745 * 7 6 4 9 9 C 1.52896 * 108.90827 * 297.04264 * 8 7 6 10 10 C 1.50450 * 110.44530 * 50.93546 * 9 8 7 11 11 C 1.38620 * 119.14667 * 159.60477 * 10 9 8 12 12 C 1.38723 * 118.63952 * 179.87341 * 11 10 9 13 13 C 1.38109 * 119.22720 * 359.97222 * 12 11 10 14 14 C 1.50706 * 119.60936 * 180.09215 * 13 12 11 15 15 N 1.31797 * 120.78791 * 0.06845 * 13 12 11 16 16 C 1.32676 * 121.81176 * 0.02910 * 15 13 12 17 17 C 1.41308 * 107.16240 * 180.26285 * 3 2 1 18 18 N 1.30452 * 108.01986 * 359.56169 * 17 3 2 19 19 N 1.34259 * 126.29308 * 180.02562 * 2 1 3 20 20 C 1.46494 * 125.75137 * 359.97438 * 19 2 1 21 21 C 1.50701 * 109.47469 * 89.99789 * 20 19 2 22 22 H 1.07991 * 119.99795 * 0.02562 * 21 20 19 23 23 C 1.37873 * 120.00106 * 179.97438 * 21 20 19 24 24 N 1.31519 * 120.00020 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00214 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47196 * 59.99443 * 25 23 21 27 27 H 1.48502 * 109.47285 * 180.02562 * 25 23 21 28 28 H 1.48507 * 109.46741 * 299.99629 * 25 23 21 29 29 H 1.08995 * 109.47372 * 89.96884 * 1 2 3 30 30 H 1.08993 * 109.46935 * 209.97338 * 1 2 3 31 31 H 1.08997 * 109.46905 * 329.97399 * 1 2 3 32 32 H 1.09004 * 109.66706 * 105.33355 * 7 6 4 33 33 H 1.08993 * 109.89145 * 344.51253 * 7 6 4 34 34 H 1.09005 * 109.57701 * 177.18138 * 8 7 6 35 35 H 1.09000 * 109.58170 * 56.90948 * 8 7 6 36 36 H 1.08995 * 109.30231 * 171.23206 * 9 8 7 37 37 H 1.08996 * 109.30680 * 290.63345 * 9 8 7 38 38 H 1.07996 * 120.68135 * 359.89508 * 11 10 9 39 39 H 1.08004 * 120.38606 * 179.97438 * 12 11 10 40 40 H 1.08999 * 109.47310 * 88.67684 * 14 13 12 41 41 H 1.08994 * 109.47234 * 208.68124 * 14 13 12 42 42 H 1.08997 * 109.46827 * 328.68097 * 14 13 12 43 43 H 1.07997 * 125.99303 * 179.73622 * 17 3 2 44 44 H 1.09005 * 109.46918 * 210.00020 * 20 19 2 45 45 H 1.08997 * 109.47057 * 329.99617 * 20 19 2 46 46 H 0.97003 * 119.99733 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.1129 0.0000 4 6 1.8862 2.5202 0.0005 5 8 0.9543 2.8666 0.7006 6 7 2.5186 3.4231 -0.7749 7 6 3.5608 2.9942 -1.7167 8 6 4.7408 3.9666 -1.5881 9 6 4.2776 5.3647 -1.9983 10 6 3.0186 5.7378 -1.2640 11 6 2.6717 7.0755 -1.1551 12 6 1.5073 7.4075 -0.4781 13 6 0.7322 6.4011 0.0639 14 6 -0.5356 6.7519 0.7994 15 7 1.0877 5.1376 -0.0547 16 6 2.1944 4.7794 -0.6928 17 6 3.6593 0.6499 -0.0062 18 7 3.6341 -0.6544 -0.0002 19 7 2.3017 -1.0821 -0.0005 20 6 1.8501 -2.4757 -0.0006 21 6 1.6947 -2.9534 -1.4214 22 1 1.9111 -2.2858 -2.2422 23 6 1.2772 -4.2430 -1.6734 24 7 1.0151 -5.0565 -0.6737 25 14 1.0852 -4.8354 -3.4345 26 1 2.3910 -4.7377 -4.1348 27 1 0.6273 -6.2480 -3.4345 28 1 0.0838 -3.9910 -4.1343 29 1 -0.3634 0.0006 -1.0276 30 1 -0.3633 -0.8902 0.5134 31 1 -0.3633 0.8897 0.5142 32 1 3.1698 3.0213 -2.7339 33 1 3.8877 1.9834 -1.4731 34 1 5.5524 3.6444 -2.2406 35 1 5.0880 3.9851 -0.5550 36 1 5.0595 6.0868 -1.7631 37 1 4.0872 5.3809 -3.0714 38 1 3.2950 7.8435 -1.5888 39 1 1.2104 8.4409 -0.3761 40 1 -1.3655 6.7930 0.0939 41 1 -0.7387 5.9935 1.5555 42 1 -0.4196 7.7229 1.2807 43 1 4.5452 1.2674 -0.0118 44 1 2.5850 -3.0958 0.5129 45 1 0.8917 -2.5471 0.5136 46 1 0.7217 -5.9640 -0.8511 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893239536.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:48 Heat of formation + Delta-G solvation = 64.495740 kcal Electronic energy + Delta-G solvation = -29457.848121 eV Core-core repulsion = 25541.451184 eV Total energy + Delta-G solvation = -3916.396937 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.63889 -41.81930 -39.81953 -37.92672 -35.83938 -34.99800 -33.93648 -33.22669 -32.70801 -32.06722 -29.43024 -28.88130 -28.34392 -26.31371 -25.63928 -24.73683 -23.54208 -23.09648 -21.59423 -20.94489 -20.07273 -18.89693 -18.47071 -17.91609 -17.27862 -16.91236 -16.54360 -16.48232 -16.12973 -15.85894 -15.63895 -15.25706 -15.21410 -14.63053 -14.55277 -14.35852 -14.25890 -14.13176 -13.95950 -13.65900 -13.62712 -13.53423 -13.32126 -13.14137 -13.01185 -12.95264 -12.69694 -12.36318 -12.30037 -12.05729 -11.90768 -11.84967 -11.74266 -11.19383 -11.08784 -10.75964 -10.34779 -10.27104 -9.94856 -9.53554 -8.92970 -8.37651 -6.54477 0.11302 0.42619 0.75502 1.28178 1.38319 1.39609 1.46593 1.53355 1.79574 2.19385 2.32771 2.90084 2.94571 3.31464 3.65566 3.66188 3.76709 3.87683 3.92036 4.02989 4.04623 4.09210 4.12432 4.32040 4.39522 4.49162 4.53146 4.60591 4.68948 4.72297 4.79133 4.81494 4.84473 4.86092 4.94330 5.02478 5.04211 5.08626 5.19940 5.22016 5.28386 5.34165 5.45878 5.48928 5.58897 5.73882 5.92750 6.00234 6.17656 6.53950 6.76448 7.07350 7.16679 7.33640 8.70192 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017315 B = 0.002833 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.681568 B = 9879.634430 C =10485.619734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.142 3.858 3 C -0.326 4.326 4 C 0.598 3.402 5 O -0.522 6.522 6 N -0.546 5.546 7 C 0.087 3.913 8 C -0.131 4.131 9 C -0.069 4.069 10 C -0.172 4.172 11 C -0.050 4.050 12 C -0.196 4.196 13 C 0.121 3.879 14 C -0.099 4.099 15 N -0.524 5.524 16 C 0.336 3.664 17 C 0.077 3.923 18 N -0.325 5.325 19 N -0.334 5.334 20 C 0.267 3.733 21 C -0.555 4.555 22 H 0.056 0.944 23 C 0.023 3.977 24 N -0.918 5.918 25 Si 0.972 3.028 26 H -0.270 1.270 27 H -0.275 1.275 28 H -0.267 1.267 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.105 0.895 34 H 0.119 0.881 35 H 0.069 0.931 36 H 0.107 0.893 37 H 0.093 0.907 38 H 0.176 0.824 39 H 0.166 0.834 40 H 0.083 0.917 41 H 0.053 0.947 42 H 0.103 0.897 43 H 0.222 0.778 44 H 0.032 0.968 45 H 0.049 0.951 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.638 26.296 -3.978 27.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.007 3.993 3 C -0.341 4.341 4 C 0.387 3.613 5 O -0.396 6.396 6 N -0.272 5.272 7 C -0.034 4.034 8 C -0.168 4.168 9 C -0.106 4.106 10 C -0.177 4.177 11 C -0.075 4.075 12 C -0.216 4.216 13 C -0.018 4.018 14 C -0.156 4.156 15 N -0.239 5.239 16 C 0.108 3.892 17 C -0.109 4.109 18 N -0.145 5.145 19 N -0.111 5.111 20 C 0.149 3.851 21 C -0.593 4.593 22 H 0.074 0.926 23 C -0.178 4.178 24 N -0.556 5.556 25 Si 0.796 3.204 26 H -0.196 1.196 27 H -0.200 1.200 28 H -0.191 1.191 29 H 0.105 0.895 30 H 0.096 0.904 31 H 0.111 0.889 32 H 0.097 0.903 33 H 0.123 0.877 34 H 0.137 0.863 35 H 0.088 0.912 36 H 0.126 0.874 37 H 0.111 0.889 38 H 0.193 0.807 39 H 0.183 0.817 40 H 0.101 0.899 41 H 0.072 0.928 42 H 0.121 0.879 43 H 0.239 0.761 44 H 0.050 0.950 45 H 0.066 0.934 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.236 24.260 -3.149 25.018 hybrid contribution -0.391 0.163 -0.752 0.864 sum 4.844 24.423 -3.902 25.203 Atomic orbital electron populations 1.20533 0.86125 1.04162 1.04001 1.21760 0.95671 0.86506 0.95340 1.19731 0.93877 0.92062 1.28454 1.17540 0.81200 0.83969 0.78585 1.90767 1.27990 1.79925 1.40905 1.45713 1.38608 1.03734 1.39109 1.22543 0.87479 1.01253 0.92137 1.21945 0.96964 0.94160 1.03778 1.20443 0.92898 0.97464 0.99821 1.20538 0.99336 0.93236 1.04631 1.21773 0.95934 0.94937 0.94893 1.22186 0.96612 1.01374 1.01455 1.21645 0.97430 0.87333 0.95350 1.20740 0.92646 1.02650 0.99545 1.67420 1.16176 1.21644 1.18623 1.18638 0.90854 0.84716 0.94985 1.24339 0.97019 0.91471 0.98044 1.77105 0.98277 1.13810 1.25305 1.49064 1.03206 1.07656 1.51163 1.19390 0.95243 0.72126 0.98346 1.21365 1.47998 0.98508 0.91441 0.92605 1.25751 0.93800 0.95933 1.02328 1.70001 1.44813 1.07594 1.33205 0.85386 0.78921 0.77588 0.78524 1.19551 1.19978 1.19134 0.89481 0.90431 0.88947 0.90299 0.87690 0.86252 0.91187 0.87428 0.88897 0.80661 0.81652 0.89870 0.92751 0.87860 0.76140 0.94984 0.93356 0.91674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.44 9.92 71.24 0.71 -2.73 16 2 C 0.14 6.03 7.00 42.15 0.30 6.33 16 3 C -0.33 -12.43 5.35 -20.15 -0.11 -12.54 16 4 C 0.60 22.49 7.37 86.65 0.64 23.13 16 5 O -0.52 -22.92 14.08 -4.02 -0.06 -22.98 16 6 N -0.55 -16.56 2.96 -639.08 -1.89 -18.45 16 7 C 0.09 1.88 6.08 86.45 0.53 2.41 16 8 C -0.13 -1.77 6.12 30.71 0.19 -1.58 16 9 C -0.07 -0.83 5.79 29.73 0.17 -0.66 16 10 C -0.17 -3.45 5.76 -19.74 -0.11 -3.56 16 11 C -0.05 -0.76 9.81 22.48 0.22 -0.54 16 12 C -0.20 -3.36 9.74 22.36 0.22 -3.14 16 13 C 0.12 3.05 6.78 42.54 0.29 3.34 16 14 C -0.10 -1.95 10.16 71.24 0.72 -1.22 16 15 N -0.52 -17.53 7.87 -180.97 -1.42 -18.96 16 16 C 0.34 9.95 7.15 132.64 0.95 10.90 16 17 C 0.08 2.68 9.67 85.65 0.83 3.51 16 18 N -0.33 -14.02 12.50 -56.26 -0.70 -14.73 16 19 N -0.33 -15.54 3.56 -336.68 -1.20 -16.74 16 20 C 0.27 13.86 5.97 85.63 0.51 14.37 16 21 C -0.56 -30.26 9.39 25.60 0.24 -30.02 16 22 H 0.06 3.08 7.81 -2.91 -0.02 3.06 16 23 C 0.02 1.25 5.46 84.65 0.46 1.71 16 24 N -0.92 -51.43 13.29 21.45 0.28 -51.14 16 25 Si 0.97 42.13 29.54 68.60 2.03 44.16 16 26 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 27 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 28 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 29 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 30 H 0.08 2.92 7.05 -2.39 -0.02 2.91 16 31 H 0.09 3.46 6.78 -2.39 -0.02 3.45 16 32 H 0.08 1.61 8.14 -2.38 -0.02 1.60 16 33 H 0.11 2.41 3.78 -2.39 -0.01 2.41 16 34 H 0.12 0.92 8.14 -2.38 -0.02 0.90 16 35 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.11 0.76 8.13 -2.39 -0.02 0.74 16 37 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.18 1.17 8.06 -2.91 -0.02 1.15 16 39 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 40 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.10 1.31 8.09 -2.39 -0.02 1.29 16 43 H 0.22 5.41 7.15 -2.91 -0.02 5.39 16 44 H 0.03 1.79 8.14 -2.38 -0.02 1.77 16 45 H 0.05 2.53 7.02 -2.39 -0.02 2.51 16 46 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -75.80 377.99 4.79 -71.01 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 1.01 Total: 18.12 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: 6.75 Total: 9.70 kcal Atomic # 7 Polarization: -115.08 SS G_CDS: -4.93 Total: -120.01 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.06 Total: -22.98 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -75.80 4.79 -71.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893239536.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.510 kcal (2) G-P(sol) polarization free energy of solvation -75.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds