Wall clock time and date at job start Tue Mar 31 2020 23:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38772 * 119.77295 * 2 1 4 4 C 1.36610 * 120.66707 * 180.02562 * 3 2 1 5 5 C 1.39738 * 119.88182 * 359.95148 * 4 3 2 6 6 N 1.35791 * 133.59742 * 180.02562 * 5 4 3 7 7 C 1.30109 * 109.64370 * 179.74837 * 6 5 4 8 8 N 1.36042 * 110.09832 * 0.39058 * 7 6 5 9 9 C 1.46499 * 126.34832 * 179.88167 * 8 7 6 10 10 C 1.50697 * 109.46917 * 264.68782 * 9 8 7 11 11 O 1.21280 * 120.00057 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99933 * 179.97438 * 10 9 8 13 13 C 1.46506 * 119.99916 * 179.97438 * 12 10 9 14 14 H 1.08996 * 115.51735 * 9.41629 * 13 12 10 15 15 C 1.52999 * 117.44255 * 224.00261 * 13 12 10 16 16 H 1.08997 * 119.54065 * 4.16078 * 15 13 12 17 17 C 1.54351 * 118.14686 * 160.71821 * 15 13 12 18 18 N 1.48150 * 104.55370 * 87.28998 * 17 15 13 19 19 C 1.36940 * 127.83519 * 140.41616 * 18 17 15 20 20 H 1.07996 * 120.00417 * 340.88481 * 19 18 17 21 21 C 1.38815 * 119.99738 * 160.87794 * 19 18 17 22 22 N 1.31615 * 119.99636 * 163.43846 * 21 19 18 23 23 Si 1.86797 * 120.00082 * 343.44025 * 21 19 18 24 24 H 1.48504 * 109.47008 * 85.38354 * 23 21 19 25 25 H 1.48496 * 109.47128 * 205.38121 * 23 21 19 26 26 H 1.48496 * 109.47157 * 325.38575 * 23 21 19 27 27 C 1.48144 * 104.32848 * 320.42224 * 18 17 15 28 28 C 1.52997 * 117.44203 * 154.83467 * 13 12 10 29 29 H 1.09003 * 119.54031 * 354.23772 * 28 13 12 30 30 C 1.38056 * 107.30202 * 359.61210 * 8 7 6 31 31 C 1.37853 * 119.76850 * 179.97438 * 2 1 3 32 32 H 1.09008 * 109.46649 * 270.02744 * 1 2 3 33 33 H 1.08999 * 109.46678 * 30.01828 * 1 2 3 34 34 H 1.08996 * 109.47277 * 150.02610 * 1 2 3 35 35 H 1.07998 * 119.66996 * 359.97438 * 3 2 1 36 36 H 1.07992 * 120.05469 * 180.02562 * 4 3 2 37 37 H 1.08001 * 124.95168 * 180.26855 * 7 6 5 38 38 H 1.09000 * 109.47318 * 144.68732 * 9 8 7 39 39 H 1.09005 * 109.46990 * 24.68449 * 9 8 7 40 40 H 0.96999 * 120.00351 * 0.02562 * 12 10 9 41 41 H 1.09002 * 110.43294 * 328.53242 * 17 15 13 42 42 H 1.09002 * 110.43996 * 206.05508 * 17 15 13 43 43 H 0.97004 * 119.99763 * 179.97438 * 22 21 19 44 44 H 1.09002 * 110.40360 * 280.80290 * 27 18 17 45 45 H 1.08998 * 110.41187 * 158.37147 * 27 18 17 46 46 H 1.07996 * 120.16253 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1962 1.2045 0.0000 4 6 3.5621 1.2259 -0.0005 5 6 4.2771 0.0253 0.0000 6 7 5.6012 -0.2761 0.0001 7 6 5.7557 -1.5679 0.0060 8 7 4.5428 -2.1839 0.0013 9 6 4.3028 -3.6291 0.0031 10 6 4.0977 -4.1059 -1.4117 11 8 4.1466 -3.3162 -2.3308 12 7 3.8598 -5.4099 -1.6555 13 6 3.6599 -5.8734 -3.0308 14 1 3.8751 -5.1412 -3.8090 15 6 2.5146 -6.8557 -3.2844 16 1 1.8475 -7.1262 -2.4659 17 6 1.9926 -7.0084 -4.7289 18 7 2.8615 -8.0464 -5.3309 19 6 2.4978 -9.0572 -6.1803 20 1 1.4636 -9.3613 -6.2462 21 6 3.4584 -9.6908 -6.9566 22 7 3.1908 -10.8511 -7.5172 23 14 5.1306 -8.8966 -7.2057 24 1 6.0232 -9.2573 -6.0749 25 1 5.7238 -9.3802 -8.4782 26 1 4.9744 -7.4209 -7.2617 27 6 4.2130 -7.7430 -4.8056 28 6 3.9775 -7.3389 -3.3342 29 1 4.4256 -7.9629 -2.5610 30 6 3.5799 -1.1946 0.0008 31 6 2.1915 -1.1966 0.0005 32 1 -0.3633 0.0005 1.0278 33 1 -0.3633 0.8898 -0.5141 34 1 -0.3633 -0.8902 -0.5134 35 1 1.6471 2.1345 -0.0004 36 1 4.0883 2.1689 -0.0001 37 1 6.7082 -2.0771 0.0116 38 1 3.4132 -3.8490 0.5932 39 1 5.1624 -4.1396 0.4375 40 1 3.8204 -6.0415 -0.9203 41 1 2.0925 -6.0680 -5.2710 42 1 0.9536 -7.3377 -4.7254 43 1 3.8619 -11.2937 -8.0601 44 1 4.6596 -6.9174 -5.3596 45 1 4.8492 -8.6265 -4.8600 46 1 1.6504 -2.1312 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961564873.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:34 Heat of formation + Delta-G solvation = 113.026848 kcal Electronic energy + Delta-G solvation = -28320.637044 eV Core-core repulsion = 24406.344574 eV Total energy + Delta-G solvation = -3914.292470 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.42851 -40.17627 -38.80278 -37.91767 -34.88670 -34.53592 -32.86482 -31.77006 -31.07362 -30.60686 -28.15811 -27.91443 -26.68151 -25.69729 -23.30338 -22.42061 -21.64239 -21.23138 -20.91746 -20.37657 -19.76974 -17.79807 -17.64458 -17.33003 -17.01304 -16.40137 -15.83625 -15.46958 -15.37795 -15.17859 -14.53359 -14.24978 -14.14456 -13.81308 -13.75147 -13.65664 -13.63613 -13.07136 -12.99802 -12.59969 -12.46818 -12.32713 -12.14484 -11.84142 -11.65340 -11.55052 -11.30216 -11.14960 -10.90183 -10.85666 -10.30474 -10.23224 -10.18522 -10.08722 -9.68122 -9.43040 -8.89440 -8.77201 -8.53558 -8.23239 -7.20833 -6.00260 -3.35185 0.72609 1.28534 2.05239 2.15055 2.52240 2.87552 3.25738 3.43043 3.44000 3.65047 3.90493 4.03270 4.16634 4.17715 4.27149 4.45603 4.46497 4.63289 4.70682 4.77712 4.95378 4.97412 4.98288 5.16850 5.19636 5.24331 5.33534 5.39851 5.42256 5.44576 5.59171 5.62509 5.71745 5.82263 5.86608 6.12185 6.16227 6.29137 6.35786 6.36657 6.40224 6.44925 6.53971 6.64250 6.67365 6.79598 7.15542 7.50481 7.63076 7.84103 8.24355 8.69904 9.58127 10.10971 11.15794 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019556 B = 0.002233 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.427339 B =12536.655827 C =13208.099008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.069 4.069 3 C -0.128 4.128 4 C -0.061 4.061 5 C 0.041 3.959 6 N -0.494 5.494 7 C 0.269 3.731 8 N -0.479 5.479 9 C 0.094 3.906 10 C 0.494 3.506 11 O -0.515 6.515 12 N -0.693 5.693 13 C 0.097 3.903 14 H 0.133 0.867 15 C -0.173 4.173 16 H 0.110 0.890 17 C 0.157 3.843 18 N -0.603 5.603 19 C -0.238 4.238 20 H 0.096 0.904 21 C 0.019 3.981 22 N -0.912 5.912 23 Si 0.888 3.112 24 H -0.286 1.286 25 H -0.301 1.301 26 H -0.271 1.271 27 C 0.129 3.871 28 C -0.173 4.173 29 H 0.112 0.888 30 C 0.064 3.936 31 C -0.109 4.109 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.212 0.788 38 H 0.119 0.881 39 H 0.128 0.872 40 H 0.402 0.598 41 H 0.034 0.966 42 H 0.063 0.937 43 H 0.264 0.736 44 H 0.037 0.963 45 H 0.073 0.927 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.296 18.643 22.409 29.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.071 4.071 3 C -0.149 4.149 4 C -0.080 4.080 5 C -0.077 4.077 6 N -0.212 5.212 7 C -0.017 4.017 8 N -0.169 5.169 9 C -0.033 4.033 10 C 0.278 3.722 11 O -0.389 6.389 12 N -0.343 5.343 13 C -0.009 4.009 14 H 0.151 0.849 15 C -0.194 4.194 16 H 0.128 0.872 17 C 0.031 3.969 18 N -0.328 5.328 19 C -0.364 4.364 20 H 0.114 0.886 21 C -0.179 4.179 22 N -0.556 5.556 23 Si 0.718 3.282 24 H -0.214 1.214 25 H -0.229 1.229 26 H -0.196 1.196 27 C 0.003 3.997 28 C -0.194 4.194 29 H 0.130 0.870 30 C -0.044 4.044 31 C -0.130 4.130 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.146 0.854 36 H 0.146 0.854 37 H 0.229 0.771 38 H 0.137 0.863 39 H 0.145 0.855 40 H 0.236 0.764 41 H 0.052 0.948 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.055 0.945 45 H 0.091 0.909 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.363 19.478 21.497 29.011 hybrid contribution 0.506 -0.978 0.176 1.115 sum 0.869 18.500 21.672 28.507 Atomic orbital electron populations 1.20772 0.90640 1.03084 1.02321 1.19615 0.96011 0.92103 0.99380 1.20525 0.93463 0.97631 1.03237 1.19989 0.93186 0.95655 0.99179 1.19004 0.89365 0.92977 1.06321 1.70439 1.16819 1.12168 1.21756 1.25312 0.89589 0.88635 0.98124 1.44810 1.06407 1.04895 1.60787 1.21596 1.06345 0.79420 0.95890 1.20774 0.77574 0.82659 0.91237 1.90818 1.48881 1.53760 1.45422 1.45284 1.72006 1.08207 1.08814 1.21869 1.02467 0.92781 0.83804 0.84935 1.24372 0.91529 1.02830 1.00713 0.87202 1.21130 0.95277 0.92118 0.88393 1.45539 1.02605 1.31278 1.53359 1.18662 0.96213 1.07014 1.14532 0.88639 1.25018 0.98041 0.96886 0.97954 1.69767 1.35221 1.14324 1.36306 0.86917 0.84748 0.80104 0.76393 1.21391 1.22913 1.19585 1.21694 0.89980 0.99052 0.88998 1.24273 0.99948 0.94653 1.00556 0.87043 1.18758 0.91525 0.88703 1.05396 1.19752 0.89512 0.98378 1.05320 0.91088 0.91232 0.91459 0.85402 0.85376 0.77112 0.86259 0.85452 0.76395 0.94819 0.91834 0.92564 0.94542 0.90867 0.86343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 10.00 36.01 0.36 -0.38 16 2 C -0.07 -0.66 5.88 -104.56 -0.62 -1.27 16 3 C -0.13 -1.19 9.61 -39.97 -0.38 -1.57 16 4 C -0.06 -0.67 10.05 -39.61 -0.40 -1.06 16 5 C 0.04 0.53 7.23 -84.70 -0.61 -0.08 16 6 N -0.49 -6.48 11.27 -12.05 -0.14 -6.61 16 7 C 0.27 2.73 12.49 -89.78 -1.12 1.60 16 8 N -0.48 -4.78 2.29 -117.08 -0.27 -5.05 16 9 C 0.09 0.61 6.64 -5.20 -0.03 0.57 16 10 C 0.49 5.29 7.90 -10.99 -0.09 5.20 16 11 O -0.51 -8.32 16.00 5.56 0.09 -8.23 16 12 N -0.69 -6.77 5.56 -53.81 -0.30 -7.06 16 13 C 0.10 1.35 5.98 -67.93 -0.41 0.95 16 14 H 0.13 2.20 7.40 -51.93 -0.38 1.82 16 15 C -0.17 -2.63 7.04 -89.32 -0.63 -3.26 16 16 H 0.11 1.44 8.14 -51.93 -0.42 1.02 16 17 C 0.16 3.00 7.04 -2.43 -0.02 2.99 16 18 N -0.60 -14.25 3.19 -168.88 -0.54 -14.79 16 19 C -0.24 -6.62 10.78 -15.06 -0.16 -6.78 16 20 H 0.10 2.81 8.06 -52.49 -0.42 2.39 16 21 C 0.02 0.56 5.49 -17.43 -0.10 0.46 16 22 N -0.91 -27.82 13.97 55.49 0.78 -27.05 16 23 Si 0.89 22.34 24.49 -169.99 -4.16 18.18 16 24 H -0.29 -6.87 6.36 56.52 0.36 -6.51 16 25 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 26 H -0.27 -6.72 6.33 56.52 0.36 -6.36 16 27 C 0.13 2.70 4.49 -2.41 -0.01 2.69 16 28 C -0.17 -2.74 7.05 -89.29 -0.63 -3.37 16 29 H 0.11 1.53 8.14 -51.93 -0.42 1.11 16 30 C 0.06 0.77 6.87 -83.99 -0.58 0.19 16 31 C -0.11 -1.15 9.69 -39.50 -0.38 -1.53 16 32 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 33 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 34 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 35 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 36 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 37 H 0.21 1.21 8.06 -52.49 -0.42 0.79 16 38 H 0.12 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.13 0.33 8.13 -51.93 -0.42 -0.09 16 40 H 0.40 2.49 8.83 -40.82 -0.36 2.13 16 41 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 43 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 44 H 0.04 0.79 6.80 -51.93 -0.35 0.44 16 45 H 0.07 1.65 5.06 -51.93 -0.26 1.39 16 46 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 380.64 15.07 5.74 5.74 Total: -1.00 -37.49 380.64 -11.10 -48.59 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -6.49 Total: 0.95 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -5.80 Total: -4.66 kcal Atomic # 7 Polarization: -60.10 SS G_CDS: -0.47 Total: -60.57 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.09 Total: -8.23 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.16 Total: 18.18 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.49 -11.10 -48.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961564873.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.621 kcal (2) G-P(sol) polarization free energy of solvation -37.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds