Wall clock time and date at job start Tue Mar 31 2020 23:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38772 * 119.77295 * 2 1 4 4 C 1.36610 * 120.66707 * 180.02562 * 3 2 1 5 5 C 1.39738 * 119.88182 * 359.95148 * 4 3 2 6 6 N 1.35791 * 133.59742 * 180.02562 * 5 4 3 7 7 C 1.30109 * 109.64370 * 179.74837 * 6 5 4 8 8 N 1.36042 * 110.09832 * 0.39058 * 7 6 5 9 9 C 1.46499 * 126.34832 * 179.88167 * 8 7 6 10 10 C 1.50697 * 109.46917 * 264.68782 * 9 8 7 11 11 O 1.21280 * 120.00057 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99933 * 179.97438 * 10 9 8 13 13 C 1.46506 * 119.99916 * 179.97438 * 12 10 9 14 14 H 1.08996 * 115.51735 * 9.41629 * 13 12 10 15 15 C 1.52999 * 117.44255 * 224.00261 * 13 12 10 16 16 H 1.08997 * 119.54065 * 4.16078 * 15 13 12 17 17 C 1.54351 * 118.14686 * 160.71821 * 15 13 12 18 18 N 1.48150 * 104.55370 * 87.28998 * 17 15 13 19 19 C 1.36940 * 127.83519 * 140.41616 * 18 17 15 20 20 H 1.07996 * 120.00417 * 340.88481 * 19 18 17 21 21 C 1.38815 * 119.99738 * 160.87794 * 19 18 17 22 22 N 1.31615 * 119.99636 * 163.43846 * 21 19 18 23 23 Si 1.86797 * 120.00082 * 343.44025 * 21 19 18 24 24 H 1.48504 * 109.47008 * 85.38354 * 23 21 19 25 25 H 1.48496 * 109.47128 * 205.38121 * 23 21 19 26 26 H 1.48496 * 109.47157 * 325.38575 * 23 21 19 27 27 C 1.48144 * 104.32848 * 320.42224 * 18 17 15 28 28 C 1.52997 * 117.44203 * 154.83467 * 13 12 10 29 29 H 1.09003 * 119.54031 * 354.23772 * 28 13 12 30 30 C 1.38056 * 107.30202 * 359.61210 * 8 7 6 31 31 C 1.37853 * 119.76850 * 179.97438 * 2 1 3 32 32 H 1.09008 * 109.46649 * 270.02744 * 1 2 3 33 33 H 1.08999 * 109.46678 * 30.01828 * 1 2 3 34 34 H 1.08996 * 109.47277 * 150.02610 * 1 2 3 35 35 H 1.07998 * 119.66996 * 359.97438 * 3 2 1 36 36 H 1.07992 * 120.05469 * 180.02562 * 4 3 2 37 37 H 1.08001 * 124.95168 * 180.26855 * 7 6 5 38 38 H 1.09000 * 109.47318 * 144.68732 * 9 8 7 39 39 H 1.09005 * 109.46990 * 24.68449 * 9 8 7 40 40 H 0.96999 * 120.00351 * 0.02562 * 12 10 9 41 41 H 1.09002 * 110.43294 * 328.53242 * 17 15 13 42 42 H 1.09002 * 110.43996 * 206.05508 * 17 15 13 43 43 H 0.97004 * 119.99763 * 179.97438 * 22 21 19 44 44 H 1.09002 * 110.40360 * 280.80290 * 27 18 17 45 45 H 1.08998 * 110.41187 * 158.37147 * 27 18 17 46 46 H 1.07996 * 120.16253 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1962 1.2045 0.0000 4 6 3.5621 1.2259 -0.0005 5 6 4.2771 0.0253 0.0000 6 7 5.6012 -0.2761 0.0001 7 6 5.7557 -1.5679 0.0060 8 7 4.5428 -2.1839 0.0013 9 6 4.3028 -3.6291 0.0031 10 6 4.0977 -4.1059 -1.4117 11 8 4.1466 -3.3162 -2.3308 12 7 3.8598 -5.4099 -1.6555 13 6 3.6599 -5.8734 -3.0308 14 1 3.8751 -5.1412 -3.8090 15 6 2.5146 -6.8557 -3.2844 16 1 1.8475 -7.1262 -2.4659 17 6 1.9926 -7.0084 -4.7289 18 7 2.8615 -8.0464 -5.3309 19 6 2.4978 -9.0572 -6.1803 20 1 1.4636 -9.3613 -6.2462 21 6 3.4584 -9.6908 -6.9566 22 7 3.1908 -10.8511 -7.5172 23 14 5.1306 -8.8966 -7.2057 24 1 6.0232 -9.2573 -6.0749 25 1 5.7238 -9.3802 -8.4782 26 1 4.9744 -7.4209 -7.2617 27 6 4.2130 -7.7430 -4.8056 28 6 3.9775 -7.3389 -3.3342 29 1 4.4256 -7.9629 -2.5610 30 6 3.5799 -1.1946 0.0008 31 6 2.1915 -1.1966 0.0005 32 1 -0.3633 0.0005 1.0278 33 1 -0.3633 0.8898 -0.5141 34 1 -0.3633 -0.8902 -0.5134 35 1 1.6471 2.1345 -0.0004 36 1 4.0883 2.1689 -0.0001 37 1 6.7082 -2.0771 0.0116 38 1 3.4132 -3.8490 0.5932 39 1 5.1624 -4.1396 0.4375 40 1 3.8204 -6.0415 -0.9203 41 1 2.0925 -6.0680 -5.2710 42 1 0.9536 -7.3377 -4.7254 43 1 3.8619 -11.2937 -8.0601 44 1 4.6596 -6.9174 -5.3596 45 1 4.8492 -8.6265 -4.8600 46 1 1.6504 -2.1312 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961564873.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:33 Heat of formation + Delta-G solvation = 88.037998 kcal Electronic energy + Delta-G solvation = -28321.720642 eV Core-core repulsion = 24406.344574 eV Total energy + Delta-G solvation = -3915.376068 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.14746 -41.25267 -40.01238 -38.62867 -36.26760 -35.27317 -34.48483 -32.78523 -32.38074 -31.40166 -29.47350 -28.97467 -27.44721 -27.27861 -24.06722 -23.71521 -22.50367 -22.34980 -22.09250 -21.22470 -21.14693 -19.01159 -18.58623 -18.39006 -18.02621 -17.59945 -16.96744 -16.53876 -16.27838 -16.17195 -15.58789 -15.39058 -15.27626 -15.01586 -14.87048 -14.65597 -14.43195 -14.33200 -14.20319 -13.81945 -13.58947 -13.30214 -13.18195 -13.02223 -12.76439 -12.70937 -12.45026 -12.33702 -12.23203 -12.13893 -11.80823 -11.71492 -11.56999 -11.11133 -10.96450 -10.92674 -10.83315 -9.85092 -9.27327 -9.18766 -8.98168 -8.20722 -5.51578 -0.00529 0.53217 1.23518 1.34715 1.36554 1.36589 1.43864 1.81329 2.06054 2.35678 2.70930 2.88268 3.02442 3.21986 3.34176 3.49013 3.62954 3.64945 3.74451 3.78805 3.94448 3.98811 4.10758 4.15920 4.23745 4.30462 4.35339 4.47928 4.52126 4.62514 4.69547 4.72777 4.75472 4.84875 4.89133 4.90714 5.11572 5.14932 5.20079 5.24201 5.40126 5.42856 5.55061 5.55729 5.66428 5.96372 6.06691 6.12086 6.42293 6.63106 6.88039 7.09630 7.44111 8.07887 8.99199 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019556 B = 0.002233 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.427339 B =12536.655827 C =13208.099008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.075 4.075 3 C -0.128 4.128 4 C -0.082 4.082 5 C 0.004 3.996 6 N -0.537 5.537 7 C 0.270 3.730 8 N -0.480 5.480 9 C 0.099 3.901 10 C 0.496 3.504 11 O -0.575 6.575 12 N -0.674 5.674 13 C 0.120 3.880 14 H 0.105 0.895 15 C -0.162 4.162 16 H 0.142 0.858 17 C 0.148 3.852 18 N -0.626 5.626 19 C -0.226 4.226 20 H 0.066 0.934 21 C -0.039 4.039 22 N -0.959 5.959 23 Si 0.948 3.052 24 H -0.266 1.266 25 H -0.309 1.309 26 H -0.270 1.270 27 C 0.120 3.880 28 C -0.168 4.168 29 H 0.143 0.857 30 C 0.046 3.954 31 C -0.122 4.122 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.153 0.847 36 H 0.133 0.867 37 H 0.250 0.750 38 H 0.152 0.848 39 H 0.177 0.823 40 H 0.425 0.575 41 H 0.030 0.970 42 H 0.064 0.936 43 H 0.263 0.737 44 H 0.029 0.971 45 H 0.058 0.942 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.009 19.299 25.720 32.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.077 4.077 3 C -0.148 4.148 4 C -0.101 4.101 5 C -0.112 4.112 6 N -0.256 5.256 7 C -0.016 4.016 8 N -0.170 5.170 9 C -0.026 4.026 10 C 0.282 3.718 11 O -0.453 6.453 12 N -0.325 5.325 13 C 0.012 3.988 14 H 0.123 0.877 15 C -0.183 4.183 16 H 0.160 0.840 17 C 0.023 3.977 18 N -0.351 5.351 19 C -0.355 4.355 20 H 0.084 0.916 21 C -0.234 4.234 22 N -0.606 5.606 23 Si 0.777 3.223 24 H -0.192 1.192 25 H -0.237 1.237 26 H -0.195 1.195 27 C -0.005 4.005 28 C -0.189 4.189 29 H 0.161 0.839 30 C -0.063 4.063 31 C -0.143 4.143 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.171 0.829 36 H 0.151 0.849 37 H 0.266 0.734 38 H 0.169 0.831 39 H 0.194 0.806 40 H 0.264 0.736 41 H 0.048 0.952 42 H 0.082 0.918 43 H 0.072 0.928 44 H 0.046 0.954 45 H 0.076 0.924 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.662 20.141 24.895 32.030 hybrid contribution 0.308 -1.101 -0.849 1.424 sum 0.970 19.040 24.047 30.687 Atomic orbital electron populations 1.20815 0.88601 1.03646 1.03452 1.20028 0.97546 0.91858 0.98288 1.20855 0.93000 0.98868 1.02037 1.20258 0.94120 0.95659 1.00099 1.19450 0.89879 0.94294 1.07609 1.70382 1.17280 1.14169 1.23748 1.26088 0.90981 0.88234 0.96261 1.45000 1.05791 1.06001 1.60198 1.21966 1.10073 0.77600 0.92972 1.21553 0.75744 0.81986 0.92472 1.90817 1.51471 1.55279 1.47689 1.45025 1.71286 1.08675 1.07541 1.21353 1.00665 0.91072 0.85674 0.87675 1.24236 0.91681 1.03550 0.98868 0.84002 1.21290 0.95016 0.90642 0.90754 1.45658 1.04694 1.31465 1.53309 1.18602 0.94978 1.07253 1.14625 0.91629 1.25648 1.01774 0.97394 0.98537 1.69892 1.36630 1.15961 1.38163 0.85932 0.81041 0.78927 0.76379 1.19229 1.23737 1.19480 1.21691 0.88293 0.98093 0.92429 1.24085 1.00457 0.96586 0.97807 0.83890 1.19044 0.92315 0.89108 1.05798 1.20039 0.89251 0.99434 1.05571 0.89555 0.90225 0.91351 0.82924 0.84912 0.73391 0.83075 0.80555 0.73597 0.95198 0.91765 0.92770 0.95353 0.92427 0.84949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 10.00 71.24 0.71 -0.48 16 2 C -0.08 -1.31 5.88 -19.83 -0.12 -1.43 16 3 C -0.13 -2.25 9.61 22.02 0.21 -2.04 16 4 C -0.08 -1.82 10.05 22.25 0.22 -1.60 16 5 C 0.00 0.12 7.23 39.45 0.29 0.40 16 6 N -0.54 -14.00 11.27 -192.03 -2.16 -16.17 16 7 C 0.27 4.97 12.49 180.05 2.25 7.22 16 8 N -0.48 -8.36 2.29 -524.32 -1.20 -9.56 16 9 C 0.10 0.80 6.64 85.63 0.57 1.37 16 10 C 0.50 8.83 7.90 87.66 0.69 9.52 16 11 O -0.57 -17.65 16.00 -3.03 -0.05 -17.70 16 12 N -0.67 -10.06 5.56 -442.54 -2.46 -12.52 16 13 C 0.12 2.98 5.98 44.99 0.27 3.25 16 14 H 0.11 3.35 7.40 -2.39 -0.02 3.33 16 15 C -0.16 -4.42 7.04 -9.95 -0.07 -4.49 16 16 H 0.14 3.02 8.14 -2.39 -0.02 3.00 16 17 C 0.15 5.53 7.04 86.52 0.61 6.14 16 18 N -0.63 -29.47 3.19 -688.20 -2.20 -31.66 16 19 C -0.23 -12.91 10.78 84.03 0.91 -12.00 16 20 H 0.07 4.03 8.06 -2.91 -0.02 4.01 16 21 C -0.04 -2.31 5.49 84.86 0.47 -1.85 16 22 N -0.96 -60.30 13.97 21.65 0.30 -60.00 16 23 Si 0.95 46.96 24.49 68.60 1.68 48.64 16 24 H -0.27 -12.16 6.36 99.48 0.63 -11.53 16 25 H -0.31 -15.52 7.11 99.48 0.71 -14.82 16 26 H -0.27 -13.10 6.33 99.48 0.63 -12.47 16 27 C 0.12 4.87 4.49 86.54 0.39 5.26 16 28 C -0.17 -4.77 7.05 -9.93 -0.07 -4.84 16 29 H 0.14 3.20 8.14 -2.39 -0.02 3.18 16 30 C 0.05 1.05 6.87 38.86 0.27 1.31 16 31 C -0.12 -2.39 9.69 22.32 0.22 -2.18 16 32 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 33 H 0.08 0.71 8.08 -2.39 -0.02 0.69 16 34 H 0.07 0.74 8.08 -2.39 -0.02 0.72 16 35 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 36 H 0.13 2.58 8.06 -2.91 -0.02 2.56 16 37 H 0.25 2.08 8.06 -2.91 -0.02 2.05 16 38 H 0.15 0.36 8.14 -2.39 -0.02 0.34 16 39 H 0.18 -0.25 8.13 -2.38 -0.02 -0.27 16 40 H 0.43 2.65 8.83 -92.71 -0.82 1.83 16 41 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 44 H 0.03 1.20 6.80 -2.39 -0.02 1.19 16 45 H 0.06 2.51 5.06 -2.39 -0.01 2.50 16 46 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -88.00 380.64 1.76 -86.24 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: 0.04 Total: 9.17 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: 7.81 Total: 3.57 kcal Atomic # 7 Polarization: -122.19 SS G_CDS: -7.72 Total: -129.92 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.05 Total: -17.70 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 1.68 Total: 48.64 kcal Total: -88.00 1.76 -86.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961564873.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.281 kcal (2) G-P(sol) polarization free energy of solvation -88.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds