Wall clock time and date at job start Tue Mar 31 2020 23:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 120.00053 * 2 1 4 4 H 1.48491 * 109.47271 * 270.00038 * 3 2 1 5 5 H 1.48504 * 109.46974 * 29.99860 * 3 2 1 6 6 H 1.48500 * 109.47056 * 149.99810 * 3 2 1 7 7 C 1.38815 * 120.00300 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99516 * 359.97438 * 7 2 1 9 9 N 1.36930 * 120.00026 * 180.02562 * 7 2 1 10 10 C 1.46504 * 119.99667 * 180.02562 * 9 7 2 11 11 C 1.53951 * 113.57984 * 204.99966 * 10 9 7 12 12 C 1.52911 * 86.78004 * 220.66394 * 11 10 9 13 13 C 1.52904 * 88.04371 * 24.89618 * 12 11 10 14 14 C 1.52908 * 121.13335 * 150.61863 * 12 11 10 15 15 C 1.53947 * 86.78510 * 100.81762 * 14 12 11 16 16 N 1.46498 * 113.58361 * 139.33285 * 15 14 12 17 17 C 1.34774 * 120.00096 * 155.00085 * 16 15 14 18 18 O 1.21602 * 120.00431 * 0.02562 * 17 16 15 19 19 C 1.47386 * 119.99725 * 180.02562 * 17 16 15 20 20 C 1.39257 * 120.83556 * 0.02562 * 19 17 16 21 21 N 1.31909 * 120.96750 * 180.02562 * 20 19 17 22 22 C 1.31924 * 122.71888 * 359.93572 * 21 20 19 23 23 C 1.38690 * 120.79766 * 0.08454 * 22 21 20 24 24 N 1.37753 * 134.30817 * 179.97438 * 23 22 21 25 25 H 0.96994 * 125.55388 * 0.02562 * 24 23 22 26 26 C 1.36556 * 108.88112 * 180.02562 * 24 23 22 27 27 C 1.34644 * 109.66298 * 0.02562 * 26 24 23 28 28 C 1.40985 * 118.83925 * 359.93823 * 23 22 21 29 29 C 1.52909 * 121.13400 * 259.17372 * 12 11 10 30 30 H 0.96998 * 120.00179 * 0.02562 * 1 2 3 31 31 H 0.96994 * 120.00435 * 359.97438 * 9 7 2 32 32 H 1.08998 * 112.88060 * 336.13550 * 10 9 7 33 33 H 1.08996 * 113.66367 * 106.19079 * 11 10 9 34 34 H 1.09005 * 113.74538 * 335.14519 * 11 10 9 35 35 H 1.09006 * 113.66232 * 89.57460 * 13 12 11 36 36 H 1.09003 * 113.65945 * 220.62729 * 13 12 11 37 37 H 1.09001 * 113.66938 * 346.34282 * 14 12 11 38 38 H 1.08999 * 113.66124 * 215.28747 * 14 12 11 39 39 H 1.08999 * 113.57923 * 270.04671 * 15 14 12 40 40 H 0.97009 * 119.99841 * 335.00018 * 16 15 14 41 41 H 1.07993 * 119.51515 * 359.97438 * 20 19 17 42 42 H 1.08002 * 119.60016 * 180.02562 * 22 21 20 43 43 H 1.07999 * 125.17059 * 179.97438 * 26 24 23 44 44 H 1.08005 * 126.09305 * 179.74004 * 27 26 24 45 45 H 1.09002 * 113.66224 * 144.71088 * 29 12 11 46 46 H 1.09005 * 113.66166 * 13.65431 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0014 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4708 0.0011 11 6 5.5272 -2.3649 0.5979 12 6 5.9799 -3.2895 -0.5328 13 6 4.7835 -2.7944 -1.3460 14 6 7.4010 -3.2168 -1.0925 15 6 7.7110 -4.4539 -0.2304 16 7 8.5541 -5.4431 -0.9063 17 6 9.3116 -6.2904 -0.1821 18 8 9.2951 -6.2342 1.0325 19 6 10.1602 -7.2851 -0.8623 20 6 10.1929 -7.3644 -2.2522 21 7 10.9510 -8.2540 -2.8636 22 6 11.7142 -9.1096 -2.2110 23 6 11.7526 -9.1127 -0.8246 24 7 12.4265 -9.8581 0.1177 25 1 13.0490 -10.5773 -0.0720 26 6 12.0752 -9.4191 1.3621 27 6 11.1911 -8.4094 1.2536 28 6 10.9611 -8.1826 -0.1203 29 6 6.2080 -4.7819 -0.2903 30 1 -0.4850 0.8400 -0.0004 31 1 3.8646 -0.3621 0.0007 32 1 3.5285 -3.2971 0.4069 33 1 5.6183 -2.8090 1.5891 34 1 5.9537 -1.3634 0.5413 35 1 4.9996 -1.9130 -1.9499 36 1 4.2804 -3.5816 -1.9076 37 1 7.9461 -2.3234 -0.7878 38 1 7.4591 -3.4050 -2.1645 39 1 8.0657 -4.2098 0.7710 40 1 8.5670 -5.4882 -1.8753 41 1 9.5881 -6.6882 -2.8381 42 1 12.3156 -9.8168 -2.7629 43 1 12.4490 -9.8213 2.2921 44 1 10.7368 -7.8708 2.0721 45 1 5.9308 -5.4101 -1.1369 46 1 5.8001 -5.1388 0.6554 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000964213554.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:53 Heat of formation + Delta-G solvation = 98.347097 kcal Electronic energy + Delta-G solvation = -27876.948505 eV Core-core repulsion = 23962.019472 eV Total energy + Delta-G solvation = -3914.929032 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.24177 -40.60263 -39.31164 -38.27337 -35.98458 -33.79741 -33.03980 -32.16524 -30.48872 -30.30125 -29.74603 -25.80601 -25.42254 -25.21966 -23.95676 -23.07418 -22.47519 -21.32179 -20.91248 -20.16841 -18.90508 -18.08257 -17.63454 -17.22420 -17.13455 -16.30859 -15.64426 -15.53042 -15.27013 -15.20303 -14.84432 -14.66499 -14.32235 -14.01474 -13.70731 -13.47843 -13.16899 -12.91069 -12.66004 -12.61401 -12.49149 -12.36370 -12.26328 -11.80229 -11.64297 -11.10753 -11.04095 -10.73756 -10.66117 -10.56604 -10.20858 -10.11228 -9.84724 -9.74887 -9.63994 -9.41798 -9.13379 -9.12053 -8.85685 -8.41510 -7.22944 -5.75432 -3.10423 0.04699 0.96175 2.23775 2.46991 2.65577 2.95005 3.39024 3.41904 3.46758 3.58116 3.91978 4.19808 4.29964 4.41236 4.51824 4.60376 4.61434 4.65057 4.72766 4.75444 4.85741 4.89812 5.19718 5.29234 5.34486 5.43213 5.53415 5.64626 5.70776 5.74115 5.80887 5.84814 5.89693 5.95247 6.04370 6.10333 6.15535 6.17842 6.27102 6.34469 6.38101 6.48638 6.59568 6.83198 6.85189 7.03908 7.32558 7.49263 8.01971 8.03270 8.44580 9.22818 9.95562 10.15872 11.42941 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.032164 B = 0.001792 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.324039 B =15620.775082 C =15949.827667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.246 4.246 8 H 0.091 0.909 9 N -0.738 5.738 10 C 0.174 3.826 11 C -0.132 4.132 12 C -0.102 4.102 13 C -0.148 4.148 14 C -0.131 4.131 15 C 0.124 3.876 16 N -0.714 5.714 17 C 0.564 3.436 18 O -0.531 6.531 19 C -0.143 4.143 20 C 0.099 3.901 21 N -0.474 5.474 22 C 0.139 3.861 23 C 0.018 3.982 24 N -0.577 5.577 25 H 0.422 0.578 26 C 0.069 3.931 27 C -0.192 4.192 28 C -0.021 4.021 29 C -0.124 4.124 30 H 0.259 0.741 31 H 0.362 0.638 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.115 0.885 40 H 0.398 0.602 41 H 0.159 0.841 42 H 0.158 0.842 43 H 0.180 0.820 44 H 0.161 0.839 45 H 0.085 0.915 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.955 -21.458 -2.494 36.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.192 4.192 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.376 4.376 8 H 0.108 0.892 9 N -0.378 5.378 10 C 0.063 3.937 11 C -0.171 4.171 12 C -0.103 4.103 13 C -0.189 4.189 14 C -0.169 4.169 15 C 0.020 3.980 16 N -0.365 5.365 17 C 0.351 3.649 18 O -0.408 6.408 19 C -0.149 4.149 20 C -0.053 4.053 21 N -0.182 5.182 22 C -0.027 4.027 23 C -0.092 4.092 24 N -0.180 5.180 25 H 0.260 0.740 26 C -0.061 4.061 27 C -0.216 4.216 28 C -0.033 4.033 29 C -0.162 4.162 30 H 0.069 0.931 31 H 0.195 0.805 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.133 0.867 40 H 0.234 0.766 41 H 0.176 0.824 42 H 0.175 0.825 43 H 0.197 0.803 44 H 0.178 0.822 45 H 0.103 0.897 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 29.679 -21.509 -2.517 36.740 hybrid contribution 0.872 0.876 0.269 1.265 sum 30.551 -20.633 -2.247 36.934 Atomic orbital electron populations 1.69702 1.05116 1.25802 1.57542 1.24695 0.95257 0.97236 1.02048 0.86546 0.79234 0.84992 0.77753 1.21104 1.21759 1.20299 1.19153 0.80760 0.94750 1.42902 0.89155 1.42767 1.04048 1.02071 1.88872 1.21529 0.89437 0.89796 0.92958 1.23234 0.98768 0.98405 0.96672 1.22061 0.93865 0.95052 0.99333 1.23602 0.95414 1.00355 0.99526 1.23189 0.96862 0.97305 0.99517 1.22657 0.89389 0.87959 0.97990 1.45988 1.44981 1.35508 1.09986 1.17932 0.79317 0.80609 0.87058 1.90761 1.65974 1.70699 1.13340 1.20445 1.01060 0.99190 0.94200 1.22635 0.96281 0.95998 0.90409 1.67589 1.06731 1.04601 1.39301 1.21940 0.96510 0.96878 0.87379 1.19357 0.99912 0.97381 0.92574 1.41782 1.39446 1.32003 1.04755 0.73960 1.22261 0.98567 0.97196 0.88107 1.20932 1.03424 1.01543 0.95726 1.18191 0.95997 0.94737 0.94334 1.23152 0.94922 0.95557 1.02615 0.93087 0.80516 0.89952 0.91703 0.90267 0.90391 0.92222 0.90844 0.89713 0.86672 0.76611 0.82419 0.82514 0.80310 0.82176 0.89659 0.90771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.48 13.97 55.49 0.78 -28.71 16 2 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 3 Si 0.88 22.21 27.74 -169.99 -4.71 17.49 16 4 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.28 -6.54 6.52 56.52 0.37 -6.18 16 7 C -0.25 -6.96 10.45 -15.06 -0.16 -7.12 16 8 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 9 N -0.74 -17.47 5.20 -52.47 -0.27 -17.75 16 10 C 0.17 3.31 4.48 -66.95 -0.30 3.01 16 11 C -0.13 -2.04 7.59 -26.28 -0.20 -2.24 16 12 C -0.10 -1.34 1.11 -154.72 -0.17 -1.52 16 13 C -0.15 -2.38 7.64 -26.29 -0.20 -2.58 16 14 C -0.13 -1.41 7.59 -26.28 -0.20 -1.61 16 15 C 0.12 1.38 4.24 -66.95 -0.28 1.10 16 16 N -0.71 -7.02 5.31 -53.94 -0.29 -7.30 16 17 C 0.56 6.76 7.77 -12.54 -0.10 6.67 16 18 O -0.53 -8.02 14.82 5.28 0.08 -7.94 16 19 C -0.14 -1.52 5.91 -104.62 -0.62 -2.14 16 20 C 0.10 0.89 10.71 -17.14 -0.18 0.70 16 21 N -0.47 -4.36 10.30 -12.85 -0.13 -4.49 16 22 C 0.14 1.02 11.21 -17.35 -0.19 0.82 16 23 C 0.02 0.14 7.31 -84.00 -0.61 -0.48 16 24 N -0.58 -2.71 6.13 -10.63 -0.07 -2.77 16 25 H 0.42 0.43 8.96 -40.82 -0.37 0.07 16 26 C 0.07 0.37 11.83 -16.72 -0.20 0.17 16 27 C -0.19 -1.77 10.09 -39.75 -0.40 -2.17 16 28 C -0.02 -0.21 6.04 -106.58 -0.64 -0.86 16 29 C -0.12 -1.48 7.64 -26.28 -0.20 -1.68 16 30 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 31 H 0.36 8.41 5.79 -40.82 -0.24 8.17 16 32 H 0.08 1.62 8.10 -51.93 -0.42 1.20 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.08 1.23 8.12 -51.93 -0.42 0.80 16 35 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.80 8.12 -51.93 -0.42 0.37 16 39 H 0.12 1.47 7.46 -51.93 -0.39 1.08 16 40 H 0.40 2.85 6.80 -40.82 -0.28 2.57 16 41 H 0.16 0.99 6.42 -52.49 -0.34 0.65 16 42 H 0.16 0.61 8.06 -52.49 -0.42 0.19 16 43 H 0.18 0.29 8.06 -52.49 -0.42 -0.14 16 44 H 0.16 1.64 7.19 -52.48 -0.38 1.27 16 45 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 379.62 15.07 5.72 5.72 Total: -1.00 -36.30 379.62 -9.88 -46.18 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -6.22 Total: 9.49 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -4.76 Total: -9.91 kcal Atomic # 7 Polarization: -61.04 SS G_CDS: 0.02 Total: -61.02 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: 0.08 Total: -7.94 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.71 Total: 17.49 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.30 -9.88 -46.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964213554.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.522 kcal (2) G-P(sol) polarization free energy of solvation -36.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds