Wall clock time and date at job start Tue Mar 31 2020 23:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 120.00053 * 2 1 4 4 H 1.48491 * 109.47271 * 270.00038 * 3 2 1 5 5 H 1.48504 * 109.46974 * 29.99860 * 3 2 1 6 6 H 1.48500 * 109.47056 * 149.99810 * 3 2 1 7 7 C 1.38815 * 120.00300 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99516 * 359.97438 * 7 2 1 9 9 N 1.36930 * 120.00026 * 180.02562 * 7 2 1 10 10 C 1.46504 * 119.99667 * 180.02562 * 9 7 2 11 11 C 1.53951 * 113.57984 * 204.99966 * 10 9 7 12 12 C 1.52911 * 86.78004 * 220.66394 * 11 10 9 13 13 C 1.52904 * 88.04371 * 24.89618 * 12 11 10 14 14 C 1.52908 * 121.13335 * 150.61863 * 12 11 10 15 15 C 1.53947 * 86.78510 * 100.81762 * 14 12 11 16 16 N 1.46498 * 113.58361 * 139.33285 * 15 14 12 17 17 C 1.34774 * 120.00096 * 155.00085 * 16 15 14 18 18 O 1.21602 * 120.00431 * 0.02562 * 17 16 15 19 19 C 1.47386 * 119.99725 * 180.02562 * 17 16 15 20 20 C 1.39257 * 120.83556 * 0.02562 * 19 17 16 21 21 N 1.31909 * 120.96750 * 180.02562 * 20 19 17 22 22 C 1.31924 * 122.71888 * 359.93572 * 21 20 19 23 23 C 1.38690 * 120.79766 * 0.08454 * 22 21 20 24 24 N 1.37753 * 134.30817 * 179.97438 * 23 22 21 25 25 H 0.96994 * 125.55388 * 0.02562 * 24 23 22 26 26 C 1.36556 * 108.88112 * 180.02562 * 24 23 22 27 27 C 1.34644 * 109.66298 * 0.02562 * 26 24 23 28 28 C 1.40985 * 118.83925 * 359.93823 * 23 22 21 29 29 C 1.52909 * 121.13400 * 259.17372 * 12 11 10 30 30 H 0.96998 * 120.00179 * 0.02562 * 1 2 3 31 31 H 0.96994 * 120.00435 * 359.97438 * 9 7 2 32 32 H 1.08998 * 112.88060 * 336.13550 * 10 9 7 33 33 H 1.08996 * 113.66367 * 106.19079 * 11 10 9 34 34 H 1.09005 * 113.74538 * 335.14519 * 11 10 9 35 35 H 1.09006 * 113.66232 * 89.57460 * 13 12 11 36 36 H 1.09003 * 113.65945 * 220.62729 * 13 12 11 37 37 H 1.09001 * 113.66938 * 346.34282 * 14 12 11 38 38 H 1.08999 * 113.66124 * 215.28747 * 14 12 11 39 39 H 1.08999 * 113.57923 * 270.04671 * 15 14 12 40 40 H 0.97009 * 119.99841 * 335.00018 * 16 15 14 41 41 H 1.07993 * 119.51515 * 359.97438 * 20 19 17 42 42 H 1.08002 * 119.60016 * 180.02562 * 22 21 20 43 43 H 1.07999 * 125.17059 * 179.97438 * 26 24 23 44 44 H 1.08005 * 126.09305 * 179.74004 * 27 26 24 45 45 H 1.09002 * 113.66224 * 144.71088 * 29 12 11 46 46 H 1.09005 * 113.66166 * 13.65431 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0014 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4708 0.0011 11 6 5.5272 -2.3649 0.5979 12 6 5.9799 -3.2895 -0.5328 13 6 4.7835 -2.7944 -1.3460 14 6 7.4010 -3.2168 -1.0925 15 6 7.7110 -4.4539 -0.2304 16 7 8.5541 -5.4431 -0.9063 17 6 9.3116 -6.2904 -0.1821 18 8 9.2951 -6.2342 1.0325 19 6 10.1602 -7.2851 -0.8623 20 6 10.1929 -7.3644 -2.2522 21 7 10.9510 -8.2540 -2.8636 22 6 11.7142 -9.1096 -2.2110 23 6 11.7526 -9.1127 -0.8246 24 7 12.4265 -9.8581 0.1177 25 1 13.0490 -10.5773 -0.0720 26 6 12.0752 -9.4191 1.3621 27 6 11.1911 -8.4094 1.2536 28 6 10.9611 -8.1826 -0.1203 29 6 6.2080 -4.7819 -0.2903 30 1 -0.4850 0.8400 -0.0004 31 1 3.8646 -0.3621 0.0007 32 1 3.5285 -3.2971 0.4069 33 1 5.6183 -2.8090 1.5891 34 1 5.9537 -1.3634 0.5413 35 1 4.9996 -1.9130 -1.9499 36 1 4.2804 -3.5816 -1.9076 37 1 7.9461 -2.3234 -0.7878 38 1 7.4591 -3.4050 -2.1645 39 1 8.0657 -4.2098 0.7710 40 1 8.5670 -5.4882 -1.8753 41 1 9.5881 -6.6882 -2.8381 42 1 12.3156 -9.8168 -2.7629 43 1 12.4490 -9.8213 2.2921 44 1 10.7368 -7.8708 2.0721 45 1 5.9308 -5.4101 -1.1369 46 1 5.8001 -5.1388 0.6554 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000964213554.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:51 Heat of formation + Delta-G solvation = 72.307790 kcal Electronic energy + Delta-G solvation = -27878.077654 eV Core-core repulsion = 23962.019472 eV Total energy + Delta-G solvation = -3916.058181 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.79778 -41.65569 -40.24829 -38.92253 -37.31975 -35.30320 -34.02171 -33.35178 -32.04116 -30.99289 -30.52278 -26.76128 -26.67497 -26.21769 -25.52936 -23.79631 -23.49157 -22.15876 -21.68107 -21.51129 -19.89270 -19.42316 -18.72238 -18.34669 -17.72887 -17.20409 -16.93529 -16.33526 -16.20157 -16.07577 -15.80232 -15.70273 -15.51831 -15.26565 -14.92025 -14.63012 -14.23320 -13.76910 -13.73249 -13.61390 -13.53985 -13.41487 -13.37360 -13.05649 -12.94240 -12.88040 -12.38885 -12.19263 -12.00715 -11.85820 -11.59090 -11.26622 -11.21306 -11.05212 -10.83911 -10.79667 -10.46608 -10.03235 -9.66854 -9.25129 -8.99368 -8.01527 -5.34111 -0.57651 0.37626 1.38418 1.42136 1.49461 1.63011 1.90470 2.04426 2.15056 2.49452 2.90866 3.28391 3.35797 3.46992 3.50362 3.64487 3.69123 3.78273 3.83371 3.88542 3.90619 4.08990 4.11058 4.17133 4.31401 4.42856 4.51971 4.60126 4.66559 4.77244 4.81997 4.83534 4.95590 4.98683 5.06184 5.09754 5.13234 5.18292 5.28270 5.38834 5.48583 5.55688 5.61742 5.64236 5.79619 5.81933 6.24048 6.54112 6.56080 6.89484 7.09181 7.21026 7.86937 8.06583 9.20186 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.032164 B = 0.001792 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.324039 B =15620.775082 C =15949.827667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.068 4.068 3 Si 0.958 3.042 4 H -0.277 1.277 5 H -0.297 1.297 6 H -0.251 1.251 7 C -0.233 4.233 8 H 0.054 0.946 9 N -0.743 5.743 10 C 0.148 3.852 11 C -0.122 4.122 12 C -0.090 4.090 13 C -0.138 4.138 14 C -0.114 4.114 15 C 0.130 3.870 16 N -0.701 5.701 17 C 0.562 3.438 18 O -0.573 6.573 19 C -0.175 4.175 20 C 0.106 3.894 21 N -0.498 5.498 22 C 0.151 3.849 23 C 0.007 3.993 24 N -0.556 5.556 25 H 0.443 0.557 26 C 0.106 3.894 27 C -0.243 4.243 28 C -0.049 4.049 29 C -0.123 4.123 30 H 0.257 0.743 31 H 0.367 0.633 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.060 0.940 37 H 0.081 0.919 38 H 0.108 0.892 39 H 0.098 0.902 40 H 0.413 0.587 41 H 0.179 0.821 42 H 0.194 0.806 43 H 0.223 0.777 44 H 0.137 0.863 45 H 0.098 0.902 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.959 -22.571 -3.761 40.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.259 4.259 3 Si 0.785 3.215 4 H -0.203 1.203 5 H -0.224 1.224 6 H -0.176 1.176 7 C -0.364 4.364 8 H 0.072 0.928 9 N -0.384 5.384 10 C 0.039 3.961 11 C -0.161 4.161 12 C -0.091 4.091 13 C -0.178 4.178 14 C -0.152 4.152 15 C 0.025 3.975 16 N -0.352 5.352 17 C 0.351 3.649 18 O -0.453 6.453 19 C -0.181 4.181 20 C -0.046 4.046 21 N -0.206 5.206 22 C -0.015 4.015 23 C -0.104 4.104 24 N -0.160 5.160 25 H 0.285 0.715 26 C -0.026 4.026 27 C -0.268 4.268 28 C -0.061 4.061 29 C -0.162 4.162 30 H 0.066 0.934 31 H 0.200 0.800 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.100 0.900 38 H 0.127 0.873 39 H 0.116 0.884 40 H 0.252 0.748 41 H 0.196 0.804 42 H 0.211 0.789 43 H 0.239 0.761 44 H 0.155 0.845 45 H 0.116 0.884 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 33.764 -22.683 -3.836 40.856 hybrid contribution -0.332 0.989 0.708 1.261 sum 33.432 -21.694 -3.128 39.976 Atomic orbital electron populations 1.69893 1.07191 1.26640 1.59883 1.25551 0.96170 1.01385 1.02785 0.85365 0.78596 0.79414 0.78142 1.20278 1.22390 1.17603 1.19115 0.82930 0.93381 1.41003 0.92763 1.42749 1.02342 1.03953 1.89344 1.21899 0.90635 0.87607 0.95954 1.23122 0.95813 0.99538 0.97636 1.21877 0.94556 0.95377 0.97336 1.23414 0.96094 1.00486 0.97856 1.23151 0.94218 0.97176 1.00674 1.22421 0.88862 0.88572 0.97648 1.45820 1.44096 1.34645 1.10648 1.18250 0.79252 0.80768 0.86667 1.90733 1.67473 1.71972 1.15134 1.20403 1.02551 1.00140 0.94973 1.22929 0.95875 0.95913 0.89862 1.67684 1.07806 1.05520 1.39631 1.22541 0.95296 0.96181 0.87446 1.19428 1.00289 0.97590 0.93073 1.41808 1.38673 1.31607 1.03895 0.71452 1.22792 0.95628 0.94659 0.89537 1.20922 1.06484 1.04258 0.95107 1.18587 0.96706 0.95577 0.95259 1.23196 0.95570 0.94873 1.02561 0.93409 0.79984 0.91691 0.91385 0.89560 0.90375 0.92142 0.90019 0.87340 0.88403 0.74844 0.80395 0.78934 0.76094 0.84493 0.88381 0.92025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -64.26 13.97 21.65 0.30 -63.96 16 2 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 3 Si 0.96 46.10 27.74 68.60 1.90 48.00 16 4 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 5 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 6 H -0.25 -10.91 6.52 99.48 0.65 -10.26 16 7 C -0.23 -13.57 10.45 84.04 0.88 -12.69 16 8 H 0.05 3.47 8.06 -2.91 -0.02 3.45 16 9 N -0.74 -35.12 5.20 -319.93 -1.67 -36.78 16 10 C 0.15 5.63 4.48 45.63 0.20 5.84 16 11 C -0.12 -3.65 7.59 30.89 0.23 -3.41 16 12 C -0.09 -2.23 1.11 -52.32 -0.06 -2.29 16 13 C -0.14 -4.27 7.64 30.88 0.24 -4.04 16 14 C -0.11 -2.14 7.59 30.88 0.23 -1.90 16 15 C 0.13 2.74 4.24 45.63 0.19 2.93 16 16 N -0.70 -13.06 5.31 -442.84 -2.35 -15.41 16 17 C 0.56 13.74 7.77 86.65 0.67 14.41 16 18 O -0.57 -18.29 14.82 -4.04 -0.06 -18.35 16 19 C -0.17 -3.71 5.91 -19.86 -0.12 -3.83 16 20 C 0.11 1.77 10.71 84.93 0.91 2.68 16 21 N -0.50 -8.22 10.30 -194.56 -2.00 -10.22 16 22 C 0.15 1.83 11.21 84.79 0.95 2.78 16 23 C 0.01 0.09 7.31 38.99 0.29 0.38 16 24 N -0.56 -3.52 6.13 -187.56 -1.15 -4.67 16 25 H 0.44 -0.89 8.96 -92.71 -0.83 -1.72 16 26 C 0.11 0.90 11.83 83.13 0.98 1.88 16 27 C -0.24 -4.55 10.09 22.16 0.22 -4.32 16 28 C -0.05 -1.02 6.04 -21.14 -0.13 -1.15 16 29 C -0.12 -2.83 7.64 30.89 0.24 -2.59 16 30 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 31 H 0.37 16.50 5.79 -92.71 -0.54 15.96 16 32 H 0.06 2.66 8.10 -2.39 -0.02 2.64 16 33 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.09 2.48 8.12 -2.38 -0.02 2.46 16 35 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 36 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.11 1.59 8.12 -2.39 -0.02 1.57 16 39 H 0.10 2.48 7.46 -2.39 -0.02 2.47 16 40 H 0.41 5.06 6.80 -92.70 -0.63 4.43 16 41 H 0.18 1.91 6.42 -2.91 -0.02 1.89 16 42 H 0.19 0.75 8.06 -2.91 -0.02 0.72 16 43 H 0.22 -0.17 8.06 -2.91 -0.02 -0.19 16 44 H 0.14 3.12 7.19 -2.91 -0.02 3.10 16 45 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 46 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 Total: -1.00 -83.76 379.62 0.37 -83.38 By element: Atomic # 1 Polarization: 27.95 SS G_CDS: -1.01 Total: 26.94 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: 6.41 Total: -8.93 kcal Atomic # 7 Polarization: -124.18 SS G_CDS: -6.87 Total: -131.05 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.06 Total: -18.35 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 1.90 Total: 48.00 kcal Total: -83.76 0.37 -83.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964213554.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.693 kcal (2) G-P(sol) polarization free energy of solvation -83.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds