Wall clock time and date at job start Tue Mar 31 2020 22:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00273 * 2 1 4 4 H 1.48506 * 109.47132 * 269.99944 * 3 2 1 5 5 H 1.48496 * 109.47120 * 30.00015 * 3 2 1 6 6 H 1.48500 * 109.47255 * 150.00081 * 3 2 1 7 7 C 1.38808 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00168 * 0.02562 * 7 2 1 9 9 N 1.36945 * 120.00155 * 180.02562 * 7 2 1 10 10 C 1.46499 * 120.00184 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.46934 * 324.99562 * 10 9 7 12 12 C 1.53002 * 109.47118 * 84.99382 * 10 9 7 13 13 C 1.53005 * 109.46915 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47169 * 300.00345 * 13 12 10 15 15 C 1.52997 * 109.47003 * 60.00145 * 14 13 12 16 16 H 1.09004 * 109.47428 * 59.99857 * 15 14 13 17 17 N 1.46504 * 109.47051 * 179.97438 * 15 14 13 18 18 C 1.34768 * 120.00368 * 275.00251 * 17 15 14 19 19 O 1.21536 * 119.99936 * 359.97438 * 18 17 15 20 20 C 1.48001 * 120.00226 * 179.97438 * 18 17 15 21 21 C 1.38893 * 121.16875 * 354.22215 * 20 18 17 22 22 C 1.39350 * 119.66599 * 180.02562 * 21 20 18 23 23 N 1.31102 * 121.90957 * 359.95630 * 22 21 20 24 24 C 1.33283 * 121.61500 * 0.02562 * 23 22 21 25 25 C 1.40841 * 121.92053 * 180.02562 * 24 23 22 26 26 C 1.36172 * 118.76833 * 179.97438 * 25 24 23 27 27 N 1.32536 * 121.96294 * 0.02562 * 26 25 24 28 28 C 1.31337 * 122.59821 * 359.97438 * 27 26 25 29 29 C 1.40087 * 119.88027 * 359.97438 * 28 27 26 30 30 C 1.52994 * 109.47261 * 204.99906 * 10 9 7 31 31 H 0.97010 * 119.99595 * 0.02562 * 1 2 3 32 32 H 0.97000 * 119.99367 * 359.97438 * 9 7 2 33 33 H 1.09004 * 109.47071 * 60.00264 * 12 10 9 34 34 H 1.08998 * 109.47700 * 299.99806 * 12 10 9 35 35 H 1.08994 * 109.47077 * 180.02562 * 13 12 10 36 36 H 1.09004 * 109.46948 * 60.00296 * 13 12 10 37 37 H 1.08995 * 109.47025 * 299.99587 * 14 13 12 38 38 H 1.09000 * 109.46661 * 179.97438 * 14 13 12 39 39 H 0.97004 * 119.99535 * 94.99731 * 17 15 14 40 40 H 1.07998 * 120.16854 * 0.02562 * 21 20 18 41 41 H 1.08006 * 119.04433 * 179.97438 * 22 21 20 42 42 H 1.07997 * 120.61847 * 0.24429 * 25 24 23 43 43 H 1.08000 * 119.01335 * 179.97438 * 26 25 24 44 44 H 1.08002 * 120.05620 * 179.97438 * 28 27 26 45 45 H 1.08994 * 109.47194 * 59.99678 * 30 10 9 46 46 H 1.09004 * 109.46866 * 299.99697 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0101 -1.2021 -0.0005 8 1 1.4701 -2.1374 -0.0014 9 7 3.3796 -1.2022 0.0000 10 6 4.1120 -2.4710 -0.0011 11 1 3.5644 -3.2071 0.5874 12 6 4.2586 -2.9740 -1.4387 13 6 5.0241 -4.2987 -1.4398 14 6 6.4111 -4.0868 -0.8297 15 6 6.2644 -3.5839 0.6078 16 1 5.7172 -4.3202 1.1964 17 7 7.5925 -3.3815 1.1922 18 6 8.2447 -4.4164 1.7578 19 8 7.7309 -5.5175 1.7835 20 6 9.5866 -4.2121 2.3477 21 6 10.2470 -2.9961 2.2279 22 6 11.5099 -2.8383 2.7952 23 7 12.1033 -3.8091 3.4465 24 6 11.5277 -5.0014 3.6001 25 6 12.1590 -6.0487 4.2989 26 6 11.5119 -7.2409 4.4176 27 7 10.3104 -7.4421 3.8956 28 6 9.6626 -6.5123 3.2317 29 6 10.2421 -5.2492 3.0547 30 6 5.4990 -2.2597 0.6092 31 1 -0.4850 0.8402 -0.0004 32 1 3.8646 -0.3622 0.0004 33 1 4.8062 -2.2378 -2.0272 34 1 3.2705 -3.1246 -1.8735 35 1 5.1289 -4.6569 -2.4639 36 1 4.4769 -5.0351 -0.8512 37 1 6.9583 -3.3505 -1.4183 38 1 6.9562 -5.0307 -0.8302 39 1 8.0025 -2.5026 1.1720 40 1 9.7839 -2.1770 1.6978 41 1 12.0145 -1.8886 2.6956 42 1 13.1362 -5.9074 4.7364 43 1 11.9925 -8.0468 4.9523 44 1 8.6849 -6.7211 2.8230 45 1 5.3945 -1.9014 1.6333 46 1 6.0466 -1.5236 0.0207 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981242930.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:15 Heat of formation + Delta-G solvation = 40.787065 kcal Electronic energy + Delta-G solvation = -28561.966520 eV Core-core repulsion = 24644.541498 eV Total energy + Delta-G solvation = -3917.425023 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.82415 -40.13465 -38.46136 -38.18618 -35.09107 -34.14636 -33.45262 -31.98564 -31.41799 -31.00480 -29.54037 -28.32036 -25.92117 -24.61504 -24.00504 -23.48400 -22.19671 -21.57383 -20.73311 -19.82359 -18.96532 -18.49948 -17.73156 -17.53367 -16.49566 -16.34381 -15.65292 -15.50243 -15.18619 -14.88931 -14.72082 -14.59876 -14.46487 -13.99374 -13.89019 -13.60647 -13.54287 -13.30074 -13.19362 -12.78485 -12.45023 -12.37720 -12.33898 -11.35051 -11.19743 -11.08813 -11.05238 -10.95067 -10.81851 -10.49934 -10.42307 -10.27586 -10.12635 -9.95149 -9.81866 -9.65138 -9.62499 -9.33371 -8.96374 -8.93464 -7.33375 -5.81449 -3.17767 -0.52310 0.19803 1.11264 2.34063 2.60992 2.75725 3.31415 3.34050 3.40680 3.62874 3.64764 3.92519 4.01016 4.07994 4.21600 4.25112 4.53666 4.67979 4.68763 4.83365 4.86366 4.95418 5.08172 5.12654 5.26563 5.34919 5.39412 5.41853 5.44578 5.51540 5.55543 5.67612 5.70025 5.81387 5.87685 5.96241 6.03913 6.10898 6.22628 6.25568 6.36188 6.38581 6.55083 6.80711 6.94866 7.08330 7.21520 7.56394 7.76442 7.94592 8.37314 9.15304 9.87548 10.06609 11.36757 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018852 B = 0.002297 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.891605 B =12186.391866 C =12872.059170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.004 3.996 3 Si 0.885 3.115 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.244 4.244 8 H 0.091 0.909 9 N -0.748 5.748 10 C 0.189 3.811 11 H 0.058 0.942 12 C -0.138 4.138 13 C -0.115 4.115 14 C -0.125 4.125 15 C 0.147 3.853 16 H 0.095 0.905 17 N -0.708 5.708 18 C 0.558 3.442 19 O -0.521 6.521 20 C -0.043 4.043 21 C -0.145 4.145 22 C 0.149 3.851 23 N -0.463 5.463 24 C 0.153 3.847 25 C -0.151 4.151 26 C 0.095 3.905 27 N -0.487 5.487 28 C 0.162 3.838 29 C -0.134 4.134 30 C -0.134 4.134 31 H 0.260 0.740 32 H 0.360 0.640 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.400 0.600 40 H 0.149 0.851 41 H 0.172 0.828 42 H 0.147 0.853 43 H 0.161 0.839 44 H 0.201 0.799 45 H 0.071 0.929 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.611 -8.307 4.407 28.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.192 4.192 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.373 4.373 8 H 0.109 0.891 9 N -0.390 5.390 10 C 0.079 3.921 11 H 0.076 0.924 12 C -0.178 4.178 13 C -0.153 4.153 14 C -0.163 4.163 15 C 0.044 3.956 16 H 0.113 0.887 17 N -0.358 5.358 18 C 0.344 3.656 19 O -0.398 6.398 20 C -0.056 4.056 21 C -0.166 4.166 22 C -0.024 4.024 23 N -0.171 5.171 24 C 0.027 3.973 25 C -0.171 4.171 26 C -0.050 4.050 27 N -0.195 5.195 28 C -0.010 4.010 29 C -0.139 4.139 30 C -0.173 4.173 31 H 0.070 0.930 32 H 0.193 0.807 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.236 0.764 40 H 0.166 0.834 41 H 0.189 0.811 42 H 0.165 0.835 43 H 0.178 0.822 44 H 0.217 0.783 45 H 0.089 0.911 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 26.525 -10.000 5.045 28.793 hybrid contribution 0.487 2.641 -0.538 2.739 sum 27.012 -7.359 4.507 28.357 Atomic orbital electron populations 1.69701 1.05102 1.25829 1.57391 1.24684 0.95235 0.97210 1.02048 0.86546 0.79126 0.85068 0.77701 1.21135 1.21786 1.20427 1.19067 0.80470 0.94734 1.43063 0.89120 1.42757 1.04041 1.01852 1.90352 1.20061 0.89234 0.89401 0.93440 0.92364 1.22270 1.00348 0.95241 0.99956 1.21481 0.94791 0.98792 1.00271 1.21901 0.98435 1.01078 0.94935 1.21152 0.81166 0.98918 0.94400 0.88667 1.46084 1.19793 1.11704 1.58237 1.18013 0.84270 0.84991 0.78314 1.90627 1.67518 1.23765 1.57908 1.20405 0.94682 0.93846 0.96670 1.22537 0.96644 0.97180 1.00249 1.23150 0.91295 0.97821 0.90173 1.67871 1.35012 0.99754 1.14461 1.18926 0.90477 0.92449 0.95427 1.21724 1.02037 0.92591 1.00769 1.22451 0.90765 0.96162 0.95592 1.67768 1.08649 1.34244 1.08804 1.24501 1.00252 0.86335 0.89870 1.19679 0.96246 0.96895 1.01103 1.22142 0.97618 0.95350 1.02195 0.93035 0.80734 0.92738 0.91259 0.92189 0.91821 0.91957 0.91872 0.76447 0.83379 0.81080 0.83488 0.82193 0.78302 0.91061 0.91705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.70 13.97 55.49 0.78 -27.92 16 2 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 3 Si 0.89 21.33 27.74 -169.99 -4.71 16.62 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.20 6.52 56.52 0.37 -5.83 16 7 C -0.24 -6.59 10.41 -15.06 -0.16 -6.74 16 8 H 0.09 2.65 8.06 -52.49 -0.42 2.22 16 9 N -0.75 -16.49 4.93 -53.43 -0.26 -16.76 16 10 C 0.19 3.26 2.77 -67.93 -0.19 3.07 16 11 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 12 C -0.14 -2.17 5.50 -26.73 -0.15 -2.31 16 13 C -0.11 -1.45 5.92 -26.73 -0.16 -1.60 16 14 C -0.12 -1.41 5.49 -26.73 -0.15 -1.56 16 15 C 0.15 1.69 2.45 -67.96 -0.17 1.53 16 16 H 0.10 1.26 7.58 -51.93 -0.39 0.86 16 17 N -0.71 -6.53 5.03 -54.73 -0.28 -6.81 16 18 C 0.56 6.01 7.73 -12.26 -0.09 5.91 16 19 O -0.52 -7.05 13.27 5.33 0.07 -6.97 16 20 C -0.04 -0.40 5.93 -104.37 -0.62 -1.02 16 21 C -0.15 -0.94 9.60 -38.93 -0.37 -1.31 16 22 C 0.15 0.99 11.14 -17.45 -0.19 0.80 16 23 N -0.46 -4.39 10.33 -10.95 -0.11 -4.50 16 24 C 0.15 1.60 6.63 -84.88 -0.56 1.04 16 25 C -0.15 -1.33 10.08 -39.34 -0.40 -1.73 16 26 C 0.09 0.85 11.06 -17.99 -0.20 0.65 16 27 N -0.49 -5.64 10.31 -13.24 -0.14 -5.78 16 28 C 0.16 1.92 10.52 -17.07 -0.18 1.74 16 29 C -0.13 -1.48 5.77 -106.55 -0.61 -2.09 16 30 C -0.13 -1.76 4.86 -26.76 -0.13 -1.89 16 31 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 32 H 0.36 7.76 5.66 -40.82 -0.23 7.53 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.40 2.57 6.78 -40.82 -0.28 2.30 16 40 H 0.15 0.47 6.56 -52.49 -0.34 0.13 16 41 H 0.17 0.51 8.06 -52.48 -0.42 0.09 16 42 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 43 H 0.16 0.92 8.06 -52.49 -0.42 0.49 16 44 H 0.20 2.49 5.08 -52.49 -0.27 2.23 16 45 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 46 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 373.09 15.07 5.62 5.62 Total: -1.00 -33.75 373.09 -9.63 -43.38 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -6.17 Total: 8.63 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -4.42 Total: -5.51 kcal Atomic # 7 Polarization: -61.75 SS G_CDS: -0.01 Total: -61.76 kcal Atomic # 8 Polarization: -7.05 SS G_CDS: 0.07 Total: -6.97 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.71 Total: 16.62 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.75 -9.63 -43.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981242930.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.166 kcal (2) G-P(sol) polarization free energy of solvation -33.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds