Wall clock time and date at job start Tue Mar 31 2020 22:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00273 * 2 1 4 4 H 1.48506 * 109.47132 * 269.99944 * 3 2 1 5 5 H 1.48496 * 109.47120 * 30.00015 * 3 2 1 6 6 H 1.48500 * 109.47255 * 150.00081 * 3 2 1 7 7 C 1.38808 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00168 * 0.02562 * 7 2 1 9 9 N 1.36945 * 120.00155 * 180.02562 * 7 2 1 10 10 C 1.46499 * 120.00184 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.46934 * 324.99562 * 10 9 7 12 12 C 1.53002 * 109.47118 * 84.99382 * 10 9 7 13 13 C 1.53005 * 109.46915 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47169 * 300.00345 * 13 12 10 15 15 C 1.52997 * 109.47003 * 60.00145 * 14 13 12 16 16 H 1.09004 * 109.47428 * 59.99857 * 15 14 13 17 17 N 1.46504 * 109.47051 * 179.97438 * 15 14 13 18 18 C 1.34768 * 120.00368 * 275.00251 * 17 15 14 19 19 O 1.21536 * 119.99936 * 359.97438 * 18 17 15 20 20 C 1.48001 * 120.00226 * 179.97438 * 18 17 15 21 21 C 1.38893 * 121.16875 * 354.22215 * 20 18 17 22 22 C 1.39350 * 119.66599 * 180.02562 * 21 20 18 23 23 N 1.31102 * 121.90957 * 359.95630 * 22 21 20 24 24 C 1.33283 * 121.61500 * 0.02562 * 23 22 21 25 25 C 1.40841 * 121.92053 * 180.02562 * 24 23 22 26 26 C 1.36172 * 118.76833 * 179.97438 * 25 24 23 27 27 N 1.32536 * 121.96294 * 0.02562 * 26 25 24 28 28 C 1.31337 * 122.59821 * 359.97438 * 27 26 25 29 29 C 1.40087 * 119.88027 * 359.97438 * 28 27 26 30 30 C 1.52994 * 109.47261 * 204.99906 * 10 9 7 31 31 H 0.97010 * 119.99595 * 0.02562 * 1 2 3 32 32 H 0.97000 * 119.99367 * 359.97438 * 9 7 2 33 33 H 1.09004 * 109.47071 * 60.00264 * 12 10 9 34 34 H 1.08998 * 109.47700 * 299.99806 * 12 10 9 35 35 H 1.08994 * 109.47077 * 180.02562 * 13 12 10 36 36 H 1.09004 * 109.46948 * 60.00296 * 13 12 10 37 37 H 1.08995 * 109.47025 * 299.99587 * 14 13 12 38 38 H 1.09000 * 109.46661 * 179.97438 * 14 13 12 39 39 H 0.97004 * 119.99535 * 94.99731 * 17 15 14 40 40 H 1.07998 * 120.16854 * 0.02562 * 21 20 18 41 41 H 1.08006 * 119.04433 * 179.97438 * 22 21 20 42 42 H 1.07997 * 120.61847 * 0.24429 * 25 24 23 43 43 H 1.08000 * 119.01335 * 179.97438 * 26 25 24 44 44 H 1.08002 * 120.05620 * 179.97438 * 28 27 26 45 45 H 1.08994 * 109.47194 * 59.99678 * 30 10 9 46 46 H 1.09004 * 109.46866 * 299.99697 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0101 -1.2021 -0.0005 8 1 1.4701 -2.1374 -0.0014 9 7 3.3796 -1.2022 0.0000 10 6 4.1120 -2.4710 -0.0011 11 1 3.5644 -3.2071 0.5874 12 6 4.2586 -2.9740 -1.4387 13 6 5.0241 -4.2987 -1.4398 14 6 6.4111 -4.0868 -0.8297 15 6 6.2644 -3.5839 0.6078 16 1 5.7172 -4.3202 1.1964 17 7 7.5925 -3.3815 1.1922 18 6 8.2447 -4.4164 1.7578 19 8 7.7309 -5.5175 1.7835 20 6 9.5866 -4.2121 2.3477 21 6 10.2470 -2.9961 2.2279 22 6 11.5099 -2.8383 2.7952 23 7 12.1033 -3.8091 3.4465 24 6 11.5277 -5.0014 3.6001 25 6 12.1590 -6.0487 4.2989 26 6 11.5119 -7.2409 4.4176 27 7 10.3104 -7.4421 3.8956 28 6 9.6626 -6.5123 3.2317 29 6 10.2421 -5.2492 3.0547 30 6 5.4990 -2.2597 0.6092 31 1 -0.4850 0.8402 -0.0004 32 1 3.8646 -0.3622 0.0004 33 1 4.8062 -2.2378 -2.0272 34 1 3.2705 -3.1246 -1.8735 35 1 5.1289 -4.6569 -2.4639 36 1 4.4769 -5.0351 -0.8512 37 1 6.9583 -3.3505 -1.4183 38 1 6.9562 -5.0307 -0.8302 39 1 8.0025 -2.5026 1.1720 40 1 9.7839 -2.1770 1.6978 41 1 12.0145 -1.8886 2.6956 42 1 13.1362 -5.9074 4.7364 43 1 11.9925 -8.0468 4.9523 44 1 8.6849 -6.7211 2.8230 45 1 5.3945 -1.9014 1.6333 46 1 6.0466 -1.5236 0.0207 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981242930.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:14 Heat of formation + Delta-G solvation = 16.842482 kcal Electronic energy + Delta-G solvation = -28563.004835 eV Core-core repulsion = 24644.541498 eV Total energy + Delta-G solvation = -3918.463338 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.50703 -41.00918 -39.40011 -39.05095 -36.43396 -35.13273 -34.54554 -33.25322 -32.64670 -31.75358 -30.65671 -29.69062 -26.62537 -25.41722 -25.25094 -24.68414 -23.28109 -22.64493 -21.75328 -21.05861 -19.86106 -19.47458 -19.03697 -18.42128 -17.35642 -17.22726 -16.59273 -16.43231 -16.28672 -15.82126 -15.65788 -15.50960 -15.37726 -15.23657 -15.06350 -14.86205 -14.54239 -14.44731 -14.14724 -13.89564 -13.74557 -13.47913 -13.05499 -13.01153 -12.87209 -12.37986 -12.19230 -11.97603 -11.80803 -11.78316 -11.69658 -11.67010 -11.43107 -11.27615 -10.90542 -10.87842 -10.47706 -10.38386 -10.20890 -9.61107 -9.28988 -7.99335 -5.33298 -1.18085 -0.42812 0.39741 1.39455 1.44976 1.52210 1.64480 1.80191 2.04625 2.51755 2.95957 3.07367 3.26254 3.32034 3.36907 3.43540 3.47045 3.59402 3.62095 3.84842 4.01737 4.09876 4.16899 4.24921 4.28607 4.33977 4.38600 4.52109 4.53875 4.57662 4.64747 4.67201 4.76869 4.80164 4.82281 4.99387 5.10999 5.16364 5.21752 5.29087 5.36046 5.37983 5.51664 5.56299 5.62805 5.80940 6.24375 6.35306 6.61547 6.83746 7.02244 7.11447 7.86562 8.07134 9.22356 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018852 B = 0.002297 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.891605 B =12186.391866 C =12872.059170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.988 5.988 2 C -0.071 4.071 3 Si 0.960 3.040 4 H -0.279 1.279 5 H -0.301 1.301 6 H -0.243 1.243 7 C -0.227 4.227 8 H 0.051 0.949 9 N -0.749 5.749 10 C 0.180 3.820 11 H 0.034 0.966 12 C -0.129 4.129 13 C -0.108 4.108 14 C -0.116 4.116 15 C 0.157 3.843 16 H 0.072 0.928 17 N -0.693 5.693 18 C 0.559 3.441 19 O -0.556 6.556 20 C -0.065 4.065 21 C -0.118 4.118 22 C 0.154 3.846 23 N -0.479 5.479 24 C 0.133 3.867 25 C -0.146 4.146 26 C 0.083 3.917 27 N -0.510 5.510 28 C 0.139 3.861 29 C -0.149 4.149 30 C -0.120 4.120 31 H 0.256 0.744 32 H 0.368 0.632 33 H 0.066 0.934 34 H 0.035 0.965 35 H 0.075 0.925 36 H 0.053 0.947 37 H 0.083 0.917 38 H 0.062 0.938 39 H 0.418 0.582 40 H 0.190 0.810 41 H 0.216 0.784 42 H 0.170 0.830 43 H 0.189 0.811 44 H 0.184 0.816 45 H 0.070 0.930 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.956 -5.874 4.175 31.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.638 5.638 2 C -0.262 4.262 3 Si 0.787 3.213 4 H -0.205 1.205 5 H -0.229 1.229 6 H -0.167 1.167 7 C -0.359 4.359 8 H 0.069 0.931 9 N -0.392 5.392 10 C 0.071 3.929 11 H 0.052 0.948 12 C -0.169 4.169 13 C -0.147 4.147 14 C -0.155 4.155 15 C 0.052 3.948 16 H 0.090 0.910 17 N -0.344 5.344 18 C 0.346 3.654 19 O -0.436 6.436 20 C -0.078 4.078 21 C -0.138 4.138 22 C -0.020 4.020 23 N -0.188 5.188 24 C 0.008 3.992 25 C -0.166 4.166 26 C -0.061 4.061 27 N -0.219 5.219 28 C -0.032 4.032 29 C -0.154 4.154 30 C -0.159 4.159 31 H 0.065 0.935 32 H 0.201 0.799 33 H 0.085 0.915 34 H 0.053 0.947 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.102 0.898 38 H 0.080 0.920 39 H 0.257 0.743 40 H 0.207 0.793 41 H 0.232 0.768 42 H 0.188 0.812 43 H 0.206 0.794 44 H 0.200 0.800 45 H 0.089 0.911 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 30.942 -7.589 4.812 32.221 hybrid contribution -0.853 1.820 -0.465 2.063 sum 30.089 -5.769 4.347 30.944 Atomic orbital electron populations 1.69910 1.07387 1.26623 1.59923 1.25588 0.96157 1.01597 1.02822 0.85337 0.78843 0.79079 0.78055 1.20491 1.22855 1.16677 1.18986 0.82806 0.93161 1.40900 0.93137 1.42708 1.02243 1.03917 1.90344 1.20273 0.91099 0.86972 0.94533 0.94814 1.22097 0.99230 0.97210 0.98374 1.21410 0.95287 0.96680 1.01317 1.21824 0.97289 1.01700 0.94664 1.20836 0.82007 0.97413 0.94536 0.90972 1.45784 1.18666 1.12351 1.57628 1.18232 0.84710 0.84580 0.77844 1.90629 1.68465 1.25326 1.59167 1.20298 0.94351 0.95041 0.98120 1.23016 0.96037 0.96613 0.98159 1.23952 0.91225 0.98539 0.88240 1.67943 1.35523 0.99848 1.15449 1.19180 0.90494 0.93462 0.96099 1.22027 1.02652 0.92078 0.99797 1.22896 0.90098 0.97381 0.95753 1.67704 1.09979 1.34816 1.09359 1.24285 1.00217 0.87453 0.91238 1.19758 0.96882 0.96879 1.01871 1.21932 0.95025 0.96746 1.02152 0.93499 0.79866 0.91522 0.94653 0.90653 0.92847 0.89801 0.91967 0.74332 0.79326 0.76804 0.81248 0.79390 0.79956 0.91093 0.89016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -62.94 13.97 21.65 0.30 -62.64 16 2 C -0.07 -4.08 5.50 84.86 0.47 -3.62 16 3 Si 0.96 43.56 27.74 68.60 1.90 45.46 16 4 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 5 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 6 H -0.24 -9.48 6.52 99.48 0.65 -8.83 16 7 C -0.23 -12.60 10.41 84.03 0.87 -11.73 16 8 H 0.05 3.14 8.06 -2.91 -0.02 3.11 16 9 N -0.75 -32.37 4.93 -322.94 -1.59 -33.96 16 10 C 0.18 6.11 2.77 44.99 0.12 6.24 16 11 H 0.03 1.31 8.08 -2.39 -0.02 1.29 16 12 C -0.13 -3.96 5.50 30.60 0.17 -3.80 16 13 C -0.11 -2.61 5.92 30.60 0.18 -2.43 16 14 C -0.12 -2.33 5.49 30.59 0.17 -2.16 16 15 C 0.16 3.29 2.45 44.97 0.11 3.40 16 16 H 0.07 1.90 7.58 -2.39 -0.02 1.88 16 17 N -0.69 -10.69 5.03 -445.34 -2.24 -12.93 16 18 C 0.56 11.29 7.73 86.83 0.67 11.97 16 19 O -0.56 -15.40 13.27 -3.83 -0.05 -15.45 16 20 C -0.06 -1.11 5.93 -19.70 -0.12 -1.22 16 21 C -0.12 -1.01 9.60 22.69 0.22 -0.79 16 22 C 0.15 1.36 11.14 85.07 0.95 2.31 16 23 N -0.48 -7.70 10.33 -188.55 -1.95 -9.65 16 24 C 0.13 2.60 6.63 40.45 0.27 2.87 16 25 C -0.15 -2.40 10.08 22.43 0.23 -2.18 16 26 C 0.08 1.46 11.06 84.11 0.93 2.39 16 27 N -0.51 -12.30 10.31 -195.80 -2.02 -14.32 16 28 C 0.14 3.47 10.52 85.22 0.90 4.37 16 29 C -0.15 -3.22 5.77 -21.11 -0.12 -3.34 16 30 C -0.12 -2.81 4.86 30.57 0.15 -2.66 16 31 H 0.26 15.57 8.31 -92.70 -0.77 14.80 16 32 H 0.37 14.75 5.66 -92.71 -0.52 14.23 16 33 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.42 3.31 6.78 -92.71 -0.63 2.68 16 40 H 0.19 -0.03 6.56 -2.91 -0.02 -0.05 16 41 H 0.22 -0.05 8.06 -2.91 -0.02 -0.08 16 42 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 43 H 0.19 1.95 8.06 -2.91 -0.02 1.92 16 44 H 0.18 5.04 5.08 -2.91 -0.01 5.02 16 45 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -79.25 373.09 0.33 -78.92 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: -0.18 Total: 24.98 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: 6.16 Total: -0.40 kcal Atomic # 7 Polarization: -126.01 SS G_CDS: -7.50 Total: -133.51 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.05 Total: -15.45 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.90 Total: 45.46 kcal Total: -79.25 0.33 -78.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981242930.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.761 kcal (2) G-P(sol) polarization free energy of solvation -79.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds