Wall clock time and date at job start Tue Mar 31 2020 22:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 119.99901 * 2 1 4 4 H 1.48495 * 109.46977 * 269.99799 * 3 2 1 5 5 H 1.48499 * 109.46878 * 29.99340 * 3 2 1 6 6 H 1.48492 * 109.47404 * 149.99610 * 3 2 1 7 7 C 1.38815 * 120.00499 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99492 * 0.02562 * 7 2 1 9 9 N 1.36932 * 120.00152 * 180.02562 * 7 2 1 10 10 C 1.46503 * 120.00016 * 179.97438 * 9 7 2 11 11 H 1.09006 * 109.46906 * 34.99982 * 10 9 7 12 12 C 1.52999 * 109.47198 * 274.99946 * 10 9 7 13 13 C 1.53002 * 109.47179 * 300.00034 * 12 10 9 14 14 C 1.53005 * 109.46995 * 299.99723 * 13 12 10 15 15 C 1.53008 * 109.46808 * 60.00163 * 14 13 12 16 16 H 1.08999 * 109.47058 * 59.99638 * 15 14 13 17 17 N 1.46499 * 109.47014 * 179.97438 * 15 14 13 18 18 C 1.34777 * 119.99665 * 275.27733 * 17 15 14 19 19 O 1.21483 * 120.00334 * 359.72053 * 18 17 15 20 20 C 1.48380 * 119.99690 * 179.72343 * 18 17 15 21 21 C 1.40211 * 119.22063 * 179.72430 * 20 18 17 22 22 C 1.36641 * 119.90989 * 179.76078 * 21 20 18 23 23 C 1.40556 * 118.10582 * 0.50049 * 22 21 20 24 24 C 1.40409 * 122.06414 * 179.76986 * 23 22 21 25 25 N 1.31251 * 119.86855 * 179.97438 * 24 23 22 26 26 C 1.32594 * 122.68987 * 359.97438 * 25 24 23 27 27 C 1.36105 * 121.98881 * 0.02562 * 26 25 24 28 28 C 1.40944 * 118.77065 * 0.02562 * 27 26 25 29 29 N 1.31981 * 119.21930 * 0.02562 * 20 18 17 30 30 C 1.52992 * 109.47239 * 155.00074 * 10 9 7 31 31 H 0.96998 * 120.00419 * 0.02562 * 1 2 3 32 32 H 0.97000 * 120.00263 * 359.97438 * 9 7 2 33 33 H 1.09000 * 109.47077 * 179.97438 * 12 10 9 34 34 H 1.09005 * 109.47368 * 60.00029 * 12 10 9 35 35 H 1.09000 * 109.46999 * 179.97438 * 13 12 10 36 36 H 1.08999 * 109.47056 * 60.00198 * 13 12 10 37 37 H 1.09000 * 109.47108 * 300.00306 * 14 13 12 38 38 H 1.08995 * 109.46860 * 179.97438 * 14 13 12 39 39 H 0.97001 * 119.99790 * 94.99446 * 17 15 14 40 40 H 1.08005 * 120.04509 * 0.02562 * 21 20 18 41 41 H 1.08001 * 120.94635 * 180.22810 * 22 21 20 42 42 H 1.07999 * 120.06660 * 0.02562 * 24 23 22 43 43 H 1.07996 * 119.00634 * 180.02562 * 26 25 24 44 44 H 1.08007 * 120.61205 * 179.97438 * 27 26 25 45 45 H 1.09009 * 109.47102 * 300.00100 * 30 10 9 46 46 H 1.08999 * 109.47499 * 180.02562 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4475 2.6527 0.6999 6 1 3.5476 1.4404 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3796 -1.2020 0.0011 10 6 4.1122 -2.4707 0.0022 11 1 3.5651 -3.2067 -0.5870 12 6 4.2579 -2.9743 1.4396 13 6 5.0258 -1.9412 2.2666 14 6 6.4133 -1.7296 1.6573 15 6 6.2676 -1.2260 0.2199 16 1 5.7225 -0.2821 0.2191 17 7 7.5961 -1.0227 -0.3633 18 6 8.2532 0.1355 -0.1554 19 8 7.7418 1.0129 0.5113 20 6 9.6013 0.3389 -0.7410 21 6 10.2678 1.5524 -0.5193 22 6 11.5119 1.7529 -1.0478 23 6 12.0796 0.7210 -1.8149 24 6 13.3501 0.8401 -2.4005 25 7 13.8392 -0.1511 -3.1083 26 6 13.1805 -1.2853 -3.3029 27 6 11.9431 -1.4997 -2.7782 28 6 11.3481 -0.4818 -2.0059 29 7 10.1421 -0.6243 -1.4632 30 6 5.4996 -2.2591 -0.6070 31 1 -0.4850 0.8400 -0.0004 32 1 3.8646 -0.3620 0.0007 33 1 4.8025 -3.9185 1.4404 34 1 3.2694 -3.1251 1.8737 35 1 5.1291 -2.2998 3.2907 36 1 4.4807 -0.9973 2.2658 37 1 6.9583 -2.6735 1.6582 38 1 6.9602 -0.9933 2.2462 39 1 8.0044 -1.7234 -0.8956 40 1 9.8004 2.3259 0.0720 41 1 12.0419 2.6796 -0.8845 42 1 13.9242 1.7452 -2.2682 43 1 13.6398 -2.0625 -3.8957 44 1 11.4263 -2.4322 -2.9512 45 1 5.3959 -1.9003 -1.6311 46 1 6.0445 -3.2031 -0.6066 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981348555.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:21 Heat of formation + Delta-G solvation = 38.948901 kcal Electronic energy + Delta-G solvation = -28823.117342 eV Core-core repulsion = 24905.612611 eV Total energy + Delta-G solvation = -3917.504731 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.75312 -40.13462 -38.64649 -37.78346 -34.81915 -34.14331 -33.13197 -32.14642 -31.17537 -30.93952 -29.48185 -28.52227 -26.12473 -24.69487 -23.41343 -23.18960 -22.31214 -21.94738 -20.81925 -19.30171 -18.85659 -18.12998 -17.79974 -17.62339 -16.48279 -16.05653 -15.64131 -15.37226 -15.00605 -14.82678 -14.73509 -14.54075 -14.25667 -14.00695 -13.82325 -13.68696 -13.45131 -13.09510 -12.79650 -12.71166 -12.47865 -12.23361 -12.18949 -11.61434 -11.24743 -11.07879 -10.89506 -10.76388 -10.65610 -10.36108 -10.30870 -10.17686 -10.10348 -9.95693 -9.80777 -9.64355 -9.52595 -9.05262 -9.02906 -8.83104 -7.24120 -5.74458 -3.09571 -0.46157 0.05509 1.30379 2.06171 2.84379 2.96937 3.41961 3.47715 3.50282 3.50824 3.60738 3.81048 3.95986 4.14391 4.20249 4.35931 4.62699 4.66139 4.79463 4.93601 5.05771 5.06492 5.14751 5.22874 5.34267 5.38556 5.41296 5.52297 5.54612 5.59057 5.69136 5.76574 5.81125 5.95800 5.97443 6.05355 6.06170 6.20679 6.31452 6.38687 6.51222 6.67657 6.73780 6.89404 6.97817 7.03331 7.36265 7.45460 8.01777 8.03781 8.44627 9.23211 9.96162 10.15395 11.43851 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017442 B = 0.002580 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.950520 B =10850.013669 C =11458.439131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.006 3.994 3 Si 0.876 3.124 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.274 1.274 7 C -0.241 4.241 8 H 0.091 0.909 9 N -0.746 5.746 10 C 0.185 3.815 11 H 0.062 0.938 12 C -0.136 4.136 13 C -0.110 4.110 14 C -0.122 4.122 15 C 0.141 3.859 16 H 0.093 0.907 17 N -0.699 5.699 18 C 0.561 3.439 19 O -0.521 6.521 20 C 0.146 3.854 21 C -0.131 4.131 22 C -0.037 4.037 23 C -0.156 4.156 24 C 0.160 3.840 25 N -0.484 5.484 26 C 0.088 3.912 27 C -0.134 4.134 28 C 0.152 3.848 29 N -0.448 5.448 30 C -0.131 4.131 31 H 0.259 0.741 32 H 0.361 0.639 33 H 0.047 0.953 34 H 0.067 0.933 35 H 0.053 0.947 36 H 0.073 0.927 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.408 0.592 40 H 0.157 0.843 41 H 0.154 0.846 42 H 0.170 0.830 43 H 0.162 0.838 44 H 0.150 0.850 45 H 0.070 0.930 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.142 -2.101 -3.271 29.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.190 4.190 3 Si 0.707 3.293 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.200 1.200 7 C -0.371 4.371 8 H 0.109 0.891 9 N -0.390 5.390 10 C 0.075 3.925 11 H 0.080 0.920 12 C -0.176 4.176 13 C -0.148 4.148 14 C -0.161 4.161 15 C 0.038 3.962 16 H 0.111 0.889 17 N -0.349 5.349 18 C 0.344 3.656 19 O -0.395 6.395 20 C -0.009 4.009 21 C -0.151 4.151 22 C -0.065 4.065 23 C -0.160 4.160 24 C -0.013 4.013 25 N -0.192 5.192 26 C -0.056 4.056 27 C -0.155 4.155 28 C 0.024 3.976 29 N -0.160 5.160 30 C -0.170 4.170 31 H 0.069 0.931 32 H 0.195 0.805 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.244 0.756 40 H 0.175 0.825 41 H 0.172 0.828 42 H 0.187 0.813 43 H 0.179 0.821 44 H 0.168 0.832 45 H 0.089 0.911 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 28.891 -2.453 -3.433 29.198 hybrid contribution 0.344 1.595 0.282 1.655 sum 29.235 -0.858 -3.151 29.417 Atomic orbital electron populations 1.69691 1.05081 1.25763 1.57692 1.24635 0.95163 0.97065 1.02099 0.86672 0.79508 0.85263 0.77889 1.21181 1.21712 1.19977 1.19062 0.80603 0.94623 1.42789 0.89136 1.42875 1.03991 1.01924 1.90211 1.20132 0.89277 0.89575 0.93491 0.92038 1.22160 1.00171 0.96755 0.98544 1.21373 0.94351 1.01227 0.97887 1.21877 0.98476 1.00554 0.95169 1.21193 0.81247 1.00824 0.92984 0.88898 1.46049 1.19125 1.17022 1.52730 1.17916 0.83782 0.83080 0.80794 1.90839 1.66955 1.42660 1.39072 1.21697 0.95016 0.90700 0.93487 1.21882 0.95083 0.98051 1.00115 1.21478 0.94304 0.98064 0.92619 1.19965 0.98044 0.96330 1.01662 1.23277 0.90667 0.97215 0.90171 1.67503 1.36246 1.00896 1.14531 1.22302 0.91540 0.94649 0.97068 1.21817 0.96490 0.99553 0.97599 1.18884 0.90205 0.92887 0.95593 1.67877 1.10311 1.30213 1.07602 1.22131 0.97319 0.98014 0.99564 0.93113 0.80537 0.93409 0.91397 0.92790 0.90850 0.92227 0.92186 0.75617 0.82506 0.82812 0.81337 0.82066 0.83234 0.91131 0.91325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.42 13.97 55.49 0.78 -28.65 16 2 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 3 Si 0.88 22.68 27.74 -169.99 -4.71 17.97 16 4 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 5 H -0.29 -7.63 7.11 56.52 0.40 -7.22 16 6 H -0.27 -6.83 6.52 56.52 0.37 -6.46 16 7 C -0.24 -6.67 10.41 -15.06 -0.16 -6.83 16 8 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 9 N -0.75 -17.16 4.08 -53.43 -0.22 -17.38 16 10 C 0.19 3.37 3.10 -67.93 -0.21 3.16 16 11 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 12 C -0.14 -2.26 5.61 -26.73 -0.15 -2.41 16 13 C -0.11 -1.79 5.77 -26.73 -0.15 -1.95 16 14 C -0.12 -1.78 5.49 -26.72 -0.15 -1.93 16 15 C 0.14 2.16 2.28 -67.93 -0.15 2.01 16 16 H 0.09 1.76 5.94 -51.93 -0.31 1.46 16 17 N -0.70 -9.26 5.07 -54.58 -0.28 -9.54 16 18 C 0.56 8.06 7.78 -12.08 -0.09 7.97 16 19 O -0.52 -9.15 15.94 5.38 0.09 -9.06 16 20 C 0.15 1.73 6.75 -82.89 -0.56 1.17 16 21 C -0.13 -1.25 9.54 -39.42 -0.38 -1.63 16 22 C -0.04 -0.26 9.92 -39.29 -0.39 -0.65 16 23 C -0.16 -1.28 5.75 -106.74 -0.61 -1.90 16 24 C 0.16 1.10 11.05 -16.98 -0.19 0.91 16 25 N -0.48 -4.00 10.30 -13.18 -0.14 -4.14 16 26 C 0.09 0.63 11.06 -17.99 -0.20 0.43 16 27 C -0.13 -1.06 10.08 -39.32 -0.40 -1.45 16 28 C 0.15 1.51 6.63 -84.86 -0.56 0.94 16 29 N -0.45 -4.99 9.50 -7.49 -0.07 -5.06 16 30 C -0.13 -1.93 5.08 -26.74 -0.14 -2.07 16 31 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 32 H 0.36 8.43 3.92 -40.82 -0.16 8.27 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 1.42 7.60 -51.93 -0.39 1.03 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.41 4.55 7.91 -40.82 -0.32 4.22 16 40 H 0.16 1.41 7.60 -52.48 -0.40 1.01 16 41 H 0.15 0.49 8.06 -52.49 -0.42 0.07 16 42 H 0.17 0.57 8.06 -52.49 -0.42 0.15 16 43 H 0.16 0.70 8.06 -52.49 -0.42 0.28 16 44 H 0.15 0.92 8.06 -52.48 -0.42 0.50 16 45 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16 46 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 375.76 15.07 5.66 5.66 Total: -1.00 -34.52 375.76 -9.72 -44.24 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -6.25 Total: 10.09 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -4.58 Total: -4.14 kcal Atomic # 7 Polarization: -64.83 SS G_CDS: 0.07 Total: -64.76 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.09 Total: -9.06 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -4.71 Total: 17.97 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.52 -9.72 -44.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981348555.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.189 kcal (2) G-P(sol) polarization free energy of solvation -34.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds