Wall clock time and date at job start Tue Mar 31 2020 22:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99885 * 2 1 4 4 H 1.48488 * 109.47040 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46921 * 300.00086 * 3 2 1 6 6 H 1.48499 * 109.46925 * 59.99747 * 3 2 1 7 7 C 1.38809 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99662 * 154.08390 * 7 2 1 9 9 N 1.36933 * 120.00440 * 334.08694 * 7 2 1 10 10 C 1.46903 * 120.68706 * 326.60467 * 9 7 2 11 11 C 1.52669 * 109.34388 * 235.31160 * 10 9 7 12 12 C 1.53193 * 109.42516 * 303.76921 * 11 10 9 13 13 C 1.52624 * 109.35623 * 58.93112 * 12 11 10 14 14 C 1.53456 * 113.68661 * 74.05355 * 13 12 11 15 15 N 1.47676 * 85.96572 * 91.18066 * 14 13 12 16 16 C 1.34776 * 134.45372 * 204.29081 * 15 14 13 17 17 O 1.21585 * 120.00008 * 174.42641 * 16 15 14 18 18 C 1.47657 * 120.00221 * 354.42362 * 16 15 14 19 19 C 1.41764 * 120.37411 * 174.59080 * 18 16 15 20 20 C 1.34541 * 120.15067 * 179.75632 * 19 18 16 21 21 N 1.36730 * 120.95385 * 0.52513 * 20 19 18 22 22 C 1.36430 * 132.27154 * 179.72953 * 21 20 19 23 23 C 1.35451 * 107.22084 * 180.02562 * 22 21 20 24 24 N 1.33184 * 108.62058 * 359.97438 * 23 22 21 25 25 C 1.32648 * 109.12607 * 0.02562 * 24 23 22 26 26 C 1.38446 * 120.36998 * 354.86695 * 18 16 15 27 27 C 1.47676 * 91.09054 * 24.28661 * 15 14 13 28 28 C 1.47115 * 120.69357 * 146.87949 * 9 7 2 29 29 H 0.97004 * 119.99785 * 174.10646 * 1 2 3 30 30 H 1.09001 * 109.53484 * 355.23163 * 10 9 7 31 31 H 1.08999 * 109.53800 * 115.47517 * 10 9 7 32 32 H 1.09000 * 109.56218 * 183.71997 * 11 10 9 33 33 H 1.08997 * 109.34734 * 63.68425 * 11 10 9 34 34 H 1.09002 * 109.49053 * 298.96264 * 12 11 10 35 35 H 1.08999 * 109.48935 * 178.89742 * 12 11 10 36 36 H 1.09000 * 113.79762 * 205.43564 * 14 13 12 37 37 H 1.09001 * 113.79637 * 336.92218 * 14 13 12 38 38 H 1.08003 * 119.92604 * 0.02562 * 19 18 16 39 39 H 1.08001 * 119.53122 * 180.25633 * 20 19 18 40 40 H 1.07996 * 126.38876 * 0.02562 * 22 21 20 41 41 H 1.07997 * 125.68737 * 180.02562 * 23 22 21 42 42 H 1.07996 * 120.45301 * 359.95800 * 26 18 16 43 43 H 1.08997 * 113.79015 * 221.44697 * 27 15 14 44 44 H 1.08998 * 113.79174 * 89.98006 * 27 15 14 45 45 H 1.08998 * 109.63877 * 248.30939 * 28 9 7 46 46 H 1.09001 * 109.63707 * 8.91779 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0088 -1.2493 -0.4082 9 7 1.4289 -2.3282 0.5193 10 6 0.5062 -2.2386 1.6589 11 6 1.0000 -3.1473 2.7819 12 6 1.1456 -4.5777 2.2531 13 6 2.1308 -4.5882 1.0875 14 6 3.5953 -4.4264 1.5166 15 7 3.6312 -5.9014 1.5785 16 6 4.3820 -6.8001 2.2457 17 8 4.1168 -7.9846 2.1766 18 6 5.5267 -6.3461 3.0605 19 6 6.2514 -7.2693 3.8557 20 6 7.2968 -6.8516 4.5925 21 7 7.6726 -5.5370 4.5984 22 6 8.6701 -4.8706 5.2481 23 6 8.5836 -3.5680 4.8869 24 7 7.5657 -3.4284 4.0394 25 6 6.9949 -4.6102 3.8473 26 6 5.9008 -5.0132 3.0608 27 6 2.5148 -5.9972 0.6166 28 6 1.7200 -3.6535 -0.0492 29 1 -0.4850 -0.8357 -0.0863 30 1 0.4668 -1.2094 2.0158 31 1 -0.4890 -2.5563 1.3480 32 1 0.2836 -3.1345 3.6034 33 1 1.9669 -2.7905 3.1364 34 1 0.1756 -4.9401 1.9128 35 1 1.5168 -5.2235 3.0489 36 1 4.2360 -4.0031 0.7430 37 1 3.7188 -3.9425 2.4855 38 1 5.9665 -8.3110 3.8667 39 1 7.8444 -7.5642 5.1915 40 1 9.3937 -5.3013 5.9243 41 1 9.2324 -2.7751 5.2284 42 1 5.3600 -4.2928 2.4651 43 1 1.7800 -6.7611 0.8705 44 1 2.8341 -6.0411 -0.4246 45 1 0.8295 -4.0446 -0.5413 46 1 2.5342 -3.5724 -0.7693 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981886975.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:59 Heat of formation + Delta-G solvation = 124.423894 kcal Electronic energy + Delta-G solvation = -29788.396195 eV Core-core repulsion = 25874.597937 eV Total energy + Delta-G solvation = -3913.798257 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.06178 -40.84795 -38.72863 -37.06138 -36.06999 -34.02085 -32.83589 -30.83375 -30.57247 -30.20298 -28.93687 -26.46464 -26.13992 -25.17485 -24.33482 -23.12177 -22.35320 -22.04220 -20.83560 -19.50478 -18.52691 -17.90320 -17.37630 -17.24164 -16.84824 -16.23220 -15.93916 -15.68643 -14.81063 -14.69567 -14.48353 -14.15730 -14.11512 -13.85804 -13.75401 -13.60362 -13.32058 -13.24039 -12.78148 -12.47661 -12.24280 -12.11816 -11.96055 -11.78847 -11.45568 -11.18880 -11.11800 -10.72546 -10.48119 -10.37823 -10.31951 -10.12203 -10.03441 -9.84817 -9.78962 -9.29150 -9.16532 -8.69932 -8.34704 -8.14802 -6.87839 -6.08671 -3.31384 0.19562 0.81535 2.28479 2.41477 2.71017 2.82257 3.44421 3.51992 3.53779 3.67893 3.82712 4.08320 4.29716 4.37110 4.46937 4.61078 4.71515 4.93655 4.98585 5.10218 5.11900 5.15767 5.26854 5.30374 5.45339 5.48334 5.55000 5.60261 5.64639 5.66545 5.68210 5.76614 5.87490 5.88964 6.08699 6.13051 6.24880 6.31942 6.39258 6.44198 6.54765 6.63316 6.67431 6.71454 7.02840 7.15563 7.58647 7.64295 8.02593 8.04621 8.57043 9.08445 9.80612 10.27673 11.17828 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011330 B = 0.003591 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.759763 B = 7795.706520 C = 9646.402453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.016 4.016 3 Si 1.064 2.936 4 H -0.290 1.290 5 H -0.294 1.294 6 H -0.290 1.290 7 C -0.355 4.355 8 H 0.054 0.946 9 N -0.593 5.593 10 C 0.153 3.847 11 C -0.137 4.137 12 C -0.083 4.083 13 C -0.100 4.100 14 C 0.109 3.891 15 N -0.633 5.633 16 C 0.582 3.418 17 O -0.543 6.543 18 C -0.114 4.114 19 C -0.093 4.093 20 C 0.042 3.958 21 N -0.355 5.355 22 C -0.094 4.094 23 C 0.033 3.967 24 N -0.475 5.475 25 C 0.207 3.793 26 C -0.037 4.037 27 C 0.117 3.883 28 C 0.163 3.837 29 H 0.270 0.730 30 H 0.073 0.927 31 H 0.017 0.983 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.051 0.949 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.162 0.838 39 H 0.168 0.832 40 H 0.185 0.815 41 H 0.184 0.816 42 H 0.170 0.830 43 H 0.082 0.918 44 H 0.089 0.911 45 H 0.024 0.976 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.409 -13.531 9.693 21.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.220 4.220 3 Si 0.894 3.106 4 H -0.216 1.216 5 H -0.221 1.221 6 H -0.216 1.216 7 C -0.484 4.484 8 H 0.072 0.928 9 N -0.317 5.317 10 C 0.027 3.973 11 C -0.176 4.176 12 C -0.121 4.121 13 C -0.103 4.103 14 C -0.013 4.013 15 N -0.367 5.367 16 C 0.372 3.628 17 O -0.422 6.422 18 C -0.123 4.123 19 C -0.114 4.114 20 C -0.079 4.079 21 N -0.027 5.027 22 C -0.227 4.227 23 C -0.121 4.121 24 N -0.194 5.194 25 C -0.034 4.034 26 C -0.057 4.057 27 C -0.005 4.005 28 C 0.036 3.964 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.035 0.965 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.113 0.887 37 H 0.106 0.894 38 H 0.179 0.821 39 H 0.186 0.814 40 H 0.202 0.798 41 H 0.201 0.799 42 H 0.187 0.813 43 H 0.100 0.900 44 H 0.107 0.893 45 H 0.041 0.959 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 13.001 -11.909 9.479 20.018 hybrid contribution 0.702 -2.428 0.422 2.562 sum 13.703 -14.337 9.901 22.166 Atomic orbital electron populations 1.70720 1.06782 1.30432 1.46872 1.25875 0.96432 1.01617 0.98056 0.83553 0.74661 0.75682 0.76687 1.21605 1.22129 1.21644 1.19899 0.97831 0.88499 1.42143 0.92847 1.44057 1.53883 1.01510 1.32218 1.20786 0.91461 0.98557 0.86503 1.22006 1.01233 0.95254 0.99124 1.21119 0.97822 0.97645 0.95519 1.22605 0.94332 0.94398 0.98946 1.23510 0.97020 0.78525 1.02232 1.50052 1.34888 1.08206 1.43563 1.17508 0.80903 0.84813 0.79538 1.90768 1.70558 1.15957 1.64945 1.19996 0.98341 0.93115 1.00837 1.20757 0.93830 1.01365 0.95482 1.21462 0.99552 0.83477 1.03419 1.42912 1.21994 1.07791 1.29990 1.22789 0.98271 0.93905 1.07757 1.22643 0.97241 0.95086 0.97101 1.70752 1.09868 1.20394 1.18404 1.20810 0.98143 0.85161 0.99271 1.21513 0.92479 0.96030 0.95728 1.23298 0.86501 0.97726 0.92957 1.20810 0.98126 0.86002 0.91499 0.91967 0.90853 0.96533 0.92832 0.92321 0.91894 0.93056 0.88724 0.89448 0.82057 0.81428 0.79833 0.79905 0.81311 0.90009 0.89321 0.95864 0.92128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.31 12.63 55.49 0.70 -25.61 16 2 C -0.02 -0.44 4.62 -17.43 -0.08 -0.52 16 3 Si 1.06 24.65 29.99 -169.99 -5.10 19.55 16 4 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.35 -9.27 9.42 -15.06 -0.14 -9.41 16 8 H 0.05 1.41 7.95 -52.49 -0.42 0.99 16 9 N -0.59 -13.56 2.77 -172.75 -0.48 -14.04 16 10 C 0.15 3.32 4.75 -3.99 -0.02 3.30 16 11 C -0.14 -2.39 5.99 -26.80 -0.16 -2.55 16 12 C -0.08 -1.28 5.02 -26.82 -0.13 -1.42 16 13 C -0.10 -1.53 0.87 -154.44 -0.13 -1.66 16 14 C 0.11 1.57 5.22 -3.17 -0.02 1.55 16 15 N -0.63 -8.99 3.44 -181.67 -0.62 -9.61 16 16 C 0.58 8.68 7.99 -12.42 -0.10 8.58 16 17 O -0.54 -9.41 17.14 5.29 0.09 -9.32 16 18 C -0.11 -1.47 5.90 -104.63 -0.62 -2.09 16 19 C -0.09 -0.97 9.54 -39.54 -0.38 -1.34 16 20 C 0.04 0.37 10.91 -16.67 -0.18 0.18 16 21 N -0.35 -3.88 2.94 -62.75 -0.18 -4.07 16 22 C -0.09 -0.85 11.74 -16.50 -0.19 -1.04 16 23 C 0.03 0.35 11.83 -17.96 -0.21 0.14 16 24 N -0.47 -6.90 11.31 -12.80 -0.14 -7.04 16 25 C 0.21 2.85 7.79 -155.97 -1.22 1.63 16 26 C -0.04 -0.49 9.23 -38.60 -0.36 -0.85 16 27 C 0.12 1.58 7.98 -3.18 -0.03 1.56 16 28 C 0.16 3.02 5.71 -3.81 -0.02 3.00 16 29 H 0.27 7.86 7.14 -40.82 -0.29 7.57 16 30 H 0.07 1.82 6.66 -51.93 -0.35 1.47 16 31 H 0.02 0.37 7.99 -51.93 -0.41 -0.04 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 1.05 7.37 -51.93 -0.38 0.67 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.05 0.76 8.02 -51.93 -0.42 0.34 16 36 H 0.09 1.35 7.92 -51.93 -0.41 0.94 16 37 H 0.09 1.28 6.05 -51.93 -0.31 0.97 16 38 H 0.16 1.46 7.71 -52.48 -0.40 1.05 16 39 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.18 0.89 8.06 -52.49 -0.42 0.47 16 41 H 0.18 1.33 8.06 -52.49 -0.42 0.90 16 42 H 0.17 2.28 4.03 -52.49 -0.21 2.06 16 43 H 0.08 1.08 8.09 -51.93 -0.42 0.66 16 44 H 0.09 1.09 8.09 -51.93 -0.42 0.66 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.06 1.12 7.78 -51.93 -0.40 0.71 16 LS Contribution 369.45 15.07 5.57 5.57 Total: -1.00 -33.11 369.45 -10.35 -43.46 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -6.19 Total: 2.05 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -3.99 Total: -0.94 kcal Atomic # 7 Polarization: -59.63 SS G_CDS: -0.73 Total: -60.37 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.09 Total: -9.32 kcal Atomic # 14 Polarization: 24.65 SS G_CDS: -5.10 Total: 19.55 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.11 -10.35 -43.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981886975.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.883 kcal (2) G-P(sol) polarization free energy of solvation -33.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds