Wall clock time and date at job start Tue Mar 31 2020 22:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99885 * 2 1 4 4 H 1.48488 * 109.47040 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46921 * 300.00086 * 3 2 1 6 6 H 1.48499 * 109.46925 * 59.99747 * 3 2 1 7 7 C 1.38809 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99662 * 154.08390 * 7 2 1 9 9 N 1.36933 * 120.00440 * 334.08694 * 7 2 1 10 10 C 1.46903 * 120.68706 * 326.60467 * 9 7 2 11 11 C 1.52669 * 109.34388 * 235.31160 * 10 9 7 12 12 C 1.53193 * 109.42516 * 303.76921 * 11 10 9 13 13 C 1.52624 * 109.35623 * 58.93112 * 12 11 10 14 14 C 1.53456 * 113.68661 * 74.05355 * 13 12 11 15 15 N 1.47676 * 85.96572 * 91.18066 * 14 13 12 16 16 C 1.34776 * 134.45372 * 204.29081 * 15 14 13 17 17 O 1.21585 * 120.00008 * 174.42641 * 16 15 14 18 18 C 1.47657 * 120.00221 * 354.42362 * 16 15 14 19 19 C 1.41764 * 120.37411 * 174.59080 * 18 16 15 20 20 C 1.34541 * 120.15067 * 179.75632 * 19 18 16 21 21 N 1.36730 * 120.95385 * 0.52513 * 20 19 18 22 22 C 1.36430 * 132.27154 * 179.72953 * 21 20 19 23 23 C 1.35451 * 107.22084 * 180.02562 * 22 21 20 24 24 N 1.33184 * 108.62058 * 359.97438 * 23 22 21 25 25 C 1.32648 * 109.12607 * 0.02562 * 24 23 22 26 26 C 1.38446 * 120.36998 * 354.86695 * 18 16 15 27 27 C 1.47676 * 91.09054 * 24.28661 * 15 14 13 28 28 C 1.47115 * 120.69357 * 146.87949 * 9 7 2 29 29 H 0.97004 * 119.99785 * 174.10646 * 1 2 3 30 30 H 1.09001 * 109.53484 * 355.23163 * 10 9 7 31 31 H 1.08999 * 109.53800 * 115.47517 * 10 9 7 32 32 H 1.09000 * 109.56218 * 183.71997 * 11 10 9 33 33 H 1.08997 * 109.34734 * 63.68425 * 11 10 9 34 34 H 1.09002 * 109.49053 * 298.96264 * 12 11 10 35 35 H 1.08999 * 109.48935 * 178.89742 * 12 11 10 36 36 H 1.09000 * 113.79762 * 205.43564 * 14 13 12 37 37 H 1.09001 * 113.79637 * 336.92218 * 14 13 12 38 38 H 1.08003 * 119.92604 * 0.02562 * 19 18 16 39 39 H 1.08001 * 119.53122 * 180.25633 * 20 19 18 40 40 H 1.07996 * 126.38876 * 0.02562 * 22 21 20 41 41 H 1.07997 * 125.68737 * 180.02562 * 23 22 21 42 42 H 1.07996 * 120.45301 * 359.95800 * 26 18 16 43 43 H 1.08997 * 113.79015 * 221.44697 * 27 15 14 44 44 H 1.08998 * 113.79174 * 89.98006 * 27 15 14 45 45 H 1.08998 * 109.63877 * 248.30939 * 28 9 7 46 46 H 1.09001 * 109.63707 * 8.91779 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0088 -1.2493 -0.4082 9 7 1.4289 -2.3282 0.5193 10 6 0.5062 -2.2386 1.6589 11 6 1.0000 -3.1473 2.7819 12 6 1.1456 -4.5777 2.2531 13 6 2.1308 -4.5882 1.0875 14 6 3.5953 -4.4264 1.5166 15 7 3.6312 -5.9014 1.5785 16 6 4.3820 -6.8001 2.2457 17 8 4.1168 -7.9846 2.1766 18 6 5.5267 -6.3461 3.0605 19 6 6.2514 -7.2693 3.8557 20 6 7.2968 -6.8516 4.5925 21 7 7.6726 -5.5370 4.5984 22 6 8.6701 -4.8706 5.2481 23 6 8.5836 -3.5680 4.8869 24 7 7.5657 -3.4284 4.0394 25 6 6.9949 -4.6102 3.8473 26 6 5.9008 -5.0132 3.0608 27 6 2.5148 -5.9972 0.6166 28 6 1.7200 -3.6535 -0.0492 29 1 -0.4850 -0.8357 -0.0863 30 1 0.4668 -1.2094 2.0158 31 1 -0.4890 -2.5563 1.3480 32 1 0.2836 -3.1345 3.6034 33 1 1.9669 -2.7905 3.1364 34 1 0.1756 -4.9401 1.9128 35 1 1.5168 -5.2235 3.0489 36 1 4.2360 -4.0031 0.7430 37 1 3.7188 -3.9425 2.4855 38 1 5.9665 -8.3110 3.8667 39 1 7.8444 -7.5642 5.1915 40 1 9.3937 -5.3013 5.9243 41 1 9.2324 -2.7751 5.2284 42 1 5.3600 -4.2928 2.4651 43 1 1.7800 -6.7611 0.8705 44 1 2.8341 -6.0411 -0.4246 45 1 0.8295 -4.0446 -0.5413 46 1 2.5342 -3.5724 -0.7693 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981886975.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:59 Heat of formation + Delta-G solvation = 105.633438 kcal Electronic energy + Delta-G solvation = -29789.211010 eV Core-core repulsion = 25874.597937 eV Total energy + Delta-G solvation = -3914.613073 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.87200 -42.06306 -39.92657 -38.01809 -37.63269 -34.98695 -34.49480 -32.36179 -31.71607 -31.36418 -29.94686 -27.66671 -27.35933 -27.02501 -25.24985 -24.08557 -23.96297 -22.82964 -22.38076 -20.68058 -19.60040 -19.25214 -19.00689 -18.24183 -17.75958 -17.20618 -16.97896 -16.81785 -16.33068 -15.90697 -15.59589 -15.51236 -15.43627 -15.25121 -14.94279 -14.82561 -14.54222 -14.41231 -13.99449 -13.82082 -13.46592 -13.32048 -13.14278 -12.90201 -12.88793 -12.74426 -12.50709 -12.12353 -11.98492 -11.88094 -11.81203 -11.68872 -11.34392 -11.25179 -11.06109 -11.03595 -10.38660 -9.98804 -9.84489 -8.95241 -8.83999 -8.16930 -5.39355 -0.70083 0.02628 1.49346 1.53549 1.61681 1.63643 1.67611 1.84289 1.93920 2.49409 2.66719 2.89805 3.15147 3.28170 3.29758 3.49759 3.64103 3.69117 3.73668 3.87345 3.95462 4.17655 4.23944 4.26120 4.27213 4.39088 4.40796 4.45067 4.49575 4.55326 4.56803 4.66316 4.72105 4.84120 4.85748 4.87059 4.98207 5.00617 5.04721 5.18548 5.22635 5.31514 5.32672 5.49143 5.56590 5.95626 5.97390 6.45775 6.48261 6.77748 6.89064 7.12511 7.81475 8.29505 9.04428 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011330 B = 0.003591 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.759763 B = 7795.706520 C = 9646.402453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.067 4.067 3 Si 1.108 2.892 4 H -0.274 1.274 5 H -0.292 1.292 6 H -0.290 1.290 7 C -0.350 4.350 8 H 0.049 0.951 9 N -0.610 5.610 10 C 0.160 3.840 11 C -0.125 4.125 12 C -0.076 4.076 13 C -0.096 4.096 14 C 0.117 3.883 15 N -0.631 5.631 16 C 0.581 3.419 17 O -0.570 6.570 18 C -0.120 4.120 19 C -0.110 4.110 20 C 0.063 3.937 21 N -0.359 5.359 22 C -0.070 4.070 23 C 0.011 3.989 24 N -0.521 5.521 25 C 0.176 3.824 26 C -0.051 4.051 27 C 0.124 3.876 28 C 0.164 3.836 29 H 0.255 0.745 30 H 0.035 0.965 31 H 0.006 0.994 32 H 0.072 0.928 33 H 0.052 0.948 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.175 0.825 39 H 0.218 0.782 40 H 0.233 0.767 41 H 0.209 0.791 42 H 0.157 0.843 43 H 0.091 0.909 44 H 0.104 0.896 45 H 0.023 0.977 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.926 -15.521 11.521 25.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.265 4.265 3 Si 0.934 3.066 4 H -0.199 1.199 5 H -0.219 1.219 6 H -0.217 1.217 7 C -0.480 4.480 8 H 0.067 0.933 9 N -0.334 5.334 10 C 0.034 3.966 11 C -0.164 4.164 12 C -0.113 4.113 13 C -0.099 4.099 14 C -0.005 4.005 15 N -0.364 5.364 16 C 0.373 3.627 17 O -0.451 6.451 18 C -0.129 4.129 19 C -0.131 4.131 20 C -0.057 4.057 21 N -0.032 5.032 22 C -0.202 4.202 23 C -0.141 4.141 24 N -0.241 5.241 25 C -0.065 4.065 26 C -0.072 4.072 27 C 0.002 3.998 28 C 0.038 3.962 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.024 0.976 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.112 0.888 37 H 0.102 0.898 38 H 0.192 0.808 39 H 0.235 0.765 40 H 0.249 0.751 41 H 0.226 0.774 42 H 0.174 0.826 43 H 0.109 0.891 44 H 0.122 0.878 45 H 0.041 0.959 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 15.531 -13.923 11.305 23.725 hybrid contribution 0.016 -1.839 -0.108 1.842 sum 15.547 -15.762 11.197 24.810 Atomic orbital electron populations 1.70837 1.07692 1.29489 1.49999 1.27021 0.96500 1.04674 0.98298 0.82946 0.74501 0.72642 0.76489 1.19883 1.21949 1.21701 1.20111 0.97497 0.89733 1.40681 0.93343 1.44242 1.53825 1.02327 1.32970 1.20631 0.91066 0.97393 0.87505 1.21846 1.01081 0.95569 0.97942 1.21058 0.98304 0.96194 0.95784 1.22432 0.94713 0.94915 0.97808 1.23394 0.96267 0.78831 1.02011 1.50011 1.34948 1.07925 1.43551 1.17806 0.81155 0.84401 0.79341 1.90746 1.71454 1.16873 1.65998 1.19960 0.98088 0.93479 1.01336 1.20939 0.94584 1.01542 0.96015 1.22168 0.98457 0.83083 1.02000 1.43184 1.22051 1.08322 1.29612 1.23578 0.97271 0.93141 1.06252 1.23268 0.96940 0.97059 0.96823 1.70676 1.11630 1.21649 1.20188 1.20797 0.99061 0.85909 1.00748 1.21352 0.93223 0.96066 0.96579 1.23318 0.86479 0.96338 0.93695 1.20880 0.98023 0.84603 0.92714 0.93535 0.94595 0.97635 0.90964 0.92967 0.91170 0.91692 0.88833 0.89830 0.80816 0.76501 0.75077 0.77408 0.82577 0.89077 0.87847 0.95884 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.20 12.63 21.65 0.27 -55.92 16 2 C -0.07 -3.73 4.62 84.86 0.39 -3.34 16 3 Si 1.11 50.70 29.99 68.60 2.06 52.76 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 6 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 7 C -0.35 -18.72 9.42 84.03 0.79 -17.93 16 8 H 0.05 2.60 7.95 -2.91 -0.02 2.58 16 9 N -0.61 -28.50 2.77 -700.45 -1.94 -30.44 16 10 C 0.16 7.15 4.75 86.19 0.41 7.56 16 11 C -0.13 -4.35 5.99 30.55 0.18 -4.16 16 12 C -0.08 -2.25 5.02 30.53 0.15 -2.09 16 13 C -0.10 -2.87 0.87 -52.04 -0.05 -2.91 16 14 C 0.12 3.35 5.22 86.30 0.45 3.80 16 15 N -0.63 -17.43 3.44 -846.93 -2.91 -20.34 16 16 C 0.58 16.90 7.99 86.73 0.69 17.59 16 17 O -0.57 -19.15 17.14 -3.98 -0.07 -19.22 16 18 C -0.12 -3.00 5.90 -19.87 -0.12 -3.12 16 19 C -0.11 -2.03 9.54 22.29 0.21 -1.82 16 20 C 0.06 0.86 10.91 83.08 0.91 1.77 16 21 N -0.36 -6.83 2.94 -352.44 -1.04 -7.86 16 22 C -0.07 -0.98 11.74 83.33 0.98 -0.01 16 23 C 0.01 0.22 11.83 83.84 0.99 1.21 16 24 N -0.52 -14.95 11.31 -194.42 -2.20 -17.15 16 25 C 0.18 4.70 7.79 133.97 1.04 5.75 16 26 C -0.05 -1.38 9.23 22.91 0.21 -1.17 16 27 C 0.12 3.16 7.98 86.30 0.69 3.85 16 28 C 0.16 6.10 5.71 86.19 0.49 6.59 16 29 H 0.25 15.53 7.14 -92.71 -0.66 14.87 16 30 H 0.04 1.85 6.66 -2.39 -0.02 1.84 16 31 H 0.01 0.26 7.99 -2.39 -0.02 0.24 16 32 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.05 1.88 7.37 -2.39 -0.02 1.86 16 34 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.06 1.80 8.02 -2.39 -0.02 1.78 16 36 H 0.09 2.71 7.92 -2.39 -0.02 2.69 16 37 H 0.08 2.49 6.05 -2.39 -0.01 2.48 16 38 H 0.17 2.72 7.71 -2.91 -0.02 2.69 16 39 H 0.22 0.71 8.06 -2.91 -0.02 0.69 16 40 H 0.23 0.82 8.06 -2.91 -0.02 0.80 16 41 H 0.21 2.54 8.06 -2.91 -0.02 2.52 16 42 H 0.16 4.39 4.03 -2.91 -0.01 4.38 16 43 H 0.09 2.21 8.09 -2.39 -0.02 2.19 16 44 H 0.10 2.37 8.09 -2.39 -0.02 2.35 16 45 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.06 2.21 7.78 -2.39 -0.02 2.19 16 Total: -1.00 -75.09 369.45 3.72 -71.37 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: 1.11 Total: 15.24 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: 8.44 Total: 11.57 kcal Atomic # 7 Polarization: -123.90 SS G_CDS: -7.82 Total: -131.72 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.07 Total: -19.22 kcal Atomic # 14 Polarization: 50.70 SS G_CDS: 2.06 Total: 52.76 kcal Total: -75.09 3.72 -71.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981886975.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.003 kcal (2) G-P(sol) polarization free energy of solvation -75.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds