Wall clock time and date at job start Tue Mar 31 2020 23:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31155 * 1 3 3 Cl 1.73599 * 119.99967 * 2 1 4 4 C 1.50707 * 119.99983 * 180.02562 * 2 1 3 5 5 C 1.52993 * 109.47106 * 359.97438 * 4 2 1 6 6 C 1.53006 * 109.46686 * 240.00108 * 4 2 1 7 7 C 1.50697 * 109.47392 * 119.99991 * 4 2 1 8 8 O 1.21278 * 120.00168 * 114.66363 * 7 4 2 9 9 N 1.34777 * 120.00250 * 294.67201 * 7 4 2 10 10 C 1.47203 * 126.69798 * 4.74921 * 9 7 4 11 11 C 1.54059 * 106.25322 * 148.61336 * 10 9 7 12 12 C 1.53003 * 112.76195 * 141.69869 * 11 10 9 13 13 C 1.54308 * 109.26383 * 267.03655 * 11 10 9 14 14 N 1.48117 * 104.71380 * 136.30446 * 13 11 10 15 15 C 1.36936 * 127.84622 * 140.24741 * 14 13 11 16 16 H 1.07994 * 120.00190 * 345.50902 * 15 14 13 17 17 C 1.38818 * 119.99919 * 165.49665 * 15 14 13 18 18 N 1.31615 * 119.99712 * 349.38338 * 17 15 14 19 19 Si 1.86796 * 120.00020 * 169.37945 * 17 15 14 20 20 H 1.48492 * 109.47122 * 94.98105 * 19 17 15 21 21 H 1.48500 * 109.46833 * 214.98382 * 19 17 15 22 22 H 1.48505 * 109.47225 * 334.98070 * 19 17 15 23 23 C 1.49981 * 104.93486 * 320.71281 * 14 13 11 24 24 C 1.54321 * 103.81294 * 38.69583 * 23 14 13 25 25 C 1.53005 * 112.07186 * 99.66676 * 24 23 14 26 26 C 1.47196 * 126.70737 * 185.06829 * 9 7 4 27 27 H 1.08003 * 119.99899 * 179.97438 * 1 2 3 28 28 H 1.07993 * 120.00309 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47358 * 295.23966 * 5 4 2 30 30 H 1.09004 * 109.47166 * 55.24471 * 5 4 2 31 31 H 1.09000 * 109.47252 * 175.24360 * 5 4 2 32 32 H 1.09005 * 109.46596 * 180.02562 * 6 4 2 33 33 H 1.08997 * 109.47033 * 299.99559 * 6 4 2 34 34 H 1.08996 * 109.47726 * 60.00099 * 6 4 2 35 35 H 1.09002 * 110.07430 * 267.93261 * 10 9 7 36 36 H 1.09005 * 110.07262 * 29.46419 * 10 9 7 37 37 H 1.08999 * 109.46997 * 301.39281 * 12 11 10 38 38 H 1.09005 * 109.47218 * 61.38941 * 12 11 10 39 39 H 1.09002 * 109.46997 * 181.39046 * 12 11 10 40 40 H 1.08998 * 110.39111 * 255.11192 * 13 11 10 41 41 H 1.08999 * 110.39527 * 17.49524 * 13 11 10 42 42 H 0.97005 * 119.99853 * 180.02562 * 18 17 15 43 43 H 1.09001 * 110.28643 * 280.44604 * 23 14 13 44 44 H 1.08995 * 111.35184 * 157.46898 * 23 14 13 45 45 H 1.08996 * 109.46586 * 182.01220 * 25 24 23 46 46 H 1.08998 * 109.47120 * 302.00200 * 25 24 23 47 47 H 1.08992 * 109.47101 * 62.00922 * 25 24 23 48 48 H 1.09004 * 110.06607 * 330.53868 * 26 9 7 49 49 H 1.09000 * 110.06933 * 92.01637 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3115 0.0000 0.0000 3 17 2.1795 1.5034 0.0000 4 6 2.0651 -1.3052 -0.0006 5 6 1.0709 -2.4680 -0.0005 6 6 2.9447 -1.3867 1.2487 7 6 2.9315 -1.3845 -1.2310 8 8 4.1393 -1.3978 -1.1224 9 7 2.3641 -1.4406 -2.4523 10 6 0.9286 -1.3363 -2.7610 11 6 0.8330 -0.6738 -4.1486 12 6 -0.2843 -1.2645 -5.0109 13 6 0.6863 0.8525 -3.9750 14 7 1.6015 1.4355 -4.9831 15 6 1.3910 2.5338 -5.7733 16 1 0.3969 2.9432 -5.8753 17 6 2.4556 3.1212 -6.4432 18 7 3.6897 2.7610 -6.1614 19 14 2.1366 4.4227 -7.7446 20 1 2.2383 5.7713 -7.1314 21 1 3.1426 4.2949 -8.8294 22 1 0.7751 4.2364 -8.3076 23 6 2.8133 0.5520 -4.9618 24 6 2.2317 -0.8670 -4.7895 25 6 2.1594 -1.6238 -6.1174 26 6 3.0582 -1.6245 -3.7373 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9352 -0.0004 29 1 0.5020 -2.4597 0.9293 30 1 0.3891 -2.3633 -0.8445 31 1 1.6131 -3.4097 -0.0861 32 1 3.4900 -2.3305 1.2480 33 1 3.6530 -0.5582 1.2490 34 1 2.3181 -1.3293 2.1387 35 1 0.4782 -2.3286 -2.7857 36 1 0.4297 -0.7169 -2.0156 37 1 -0.1163 -2.3336 -5.1409 38 1 -1.2447 -1.1047 -4.5207 39 1 -0.2881 -0.7760 -5.9853 40 1 -0.3408 1.1601 -4.1716 41 1 0.9874 1.1513 -2.9709 42 1 4.4337 3.1717 -6.6292 43 1 3.4514 0.8062 -4.1155 44 1 3.3723 0.6227 -5.8948 45 1 1.7111 -2.6036 -5.9530 46 1 1.5509 -1.0599 -6.8243 47 1 3.1645 -1.7471 -6.5205 48 1 4.0643 -1.2088 -3.6817 49 1 3.1048 -2.6840 -3.9889 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982289086.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:28 Heat of formation + Delta-G solvation = 11.937517 kcal Electronic energy + Delta-G solvation = -30460.532226 eV Core-core repulsion = 26642.963687 eV Total energy + Delta-G solvation = -3817.568539 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.166 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.83915 -38.99486 -37.01081 -35.65978 -34.79311 -32.79198 -31.69216 -30.96099 -30.55376 -27.61681 -27.11096 -26.03088 -25.74854 -24.77436 -23.66570 -22.00504 -20.43202 -20.09533 -18.41806 -17.80724 -17.26677 -16.62747 -15.89515 -15.42037 -15.06993 -14.80037 -14.64207 -14.22523 -13.88105 -13.59226 -13.29840 -13.25561 -12.86467 -12.83887 -12.73398 -12.34268 -12.26500 -12.07347 -11.93526 -11.78756 -11.69108 -11.56236 -11.49276 -11.33857 -11.28248 -11.15868 -10.81023 -10.76482 -10.67860 -10.59805 -10.05688 -9.90872 -9.89178 -9.77974 -9.60695 -9.45809 -8.98697 -8.60913 -8.35791 -6.79205 -5.73423 -3.06102 1.72092 2.25047 2.77271 3.17886 3.39837 3.45674 3.47529 4.31615 4.45425 4.49364 4.68182 4.80630 4.83885 5.04261 5.20111 5.29236 5.42425 5.43732 5.44041 5.56181 5.59169 5.61662 5.65815 5.67666 5.69156 5.79784 5.82886 5.87917 5.95474 6.00423 6.07377 6.13392 6.13717 6.18630 6.19599 6.32898 6.46900 6.48749 6.54750 6.66980 6.76419 6.86767 6.98639 7.40436 7.59518 7.76373 7.79486 8.22712 8.34190 9.13852 9.79528 10.56787 11.40631 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.013837 B = 0.004555 C = 0.004126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.117401 B = 6146.135573 C = 6783.822967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.059 4.059 3 Cl -0.064 7.064 4 C -0.041 4.041 5 C -0.150 4.150 6 C -0.126 4.126 7 C 0.544 3.456 8 O -0.533 6.533 9 N -0.602 5.602 10 C 0.101 3.899 11 C -0.083 4.083 12 C -0.121 4.121 13 C 0.144 3.856 14 N -0.594 5.594 15 C -0.223 4.223 16 H 0.073 0.927 17 C -0.005 4.005 18 N -0.913 5.913 19 Si 0.906 3.094 20 H -0.290 1.290 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.176 3.824 24 C -0.092 4.092 25 C -0.119 4.119 26 C 0.117 3.883 27 H 0.129 0.871 28 H 0.118 0.882 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.083 0.917 37 H 0.050 0.950 38 H 0.048 0.952 39 H 0.068 0.932 40 H 0.044 0.956 41 H 0.022 0.978 42 H 0.253 0.747 43 H 0.023 0.977 44 H 0.086 0.914 45 H 0.045 0.955 46 H 0.066 0.934 47 H 0.051 0.949 48 H 0.080 0.920 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.614 -12.857 11.450 19.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.086 4.086 3 Cl -0.036 7.036 4 C -0.045 4.045 5 C -0.208 4.208 6 C -0.184 4.184 7 C 0.332 3.668 8 O -0.410 6.410 9 N -0.334 5.334 10 C -0.022 4.022 11 C -0.086 4.086 12 C -0.178 4.178 13 C 0.017 3.983 14 N -0.317 5.317 15 C -0.352 4.352 16 H 0.091 0.909 17 C -0.202 4.202 18 N -0.560 5.560 19 Si 0.737 3.263 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.206 1.206 23 C 0.051 3.949 24 C -0.094 4.094 25 C -0.176 4.176 26 C -0.006 4.006 27 H 0.147 0.853 28 H 0.136 0.864 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.101 0.899 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.087 0.913 40 H 0.063 0.937 41 H 0.040 0.960 42 H 0.063 0.937 43 H 0.041 0.959 44 H 0.104 0.896 45 H 0.064 0.936 46 H 0.085 0.915 47 H 0.070 0.930 48 H 0.099 0.901 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.708 -12.530 11.446 18.639 hybrid contribution -0.042 0.961 -0.667 1.170 sum -7.750 -11.569 10.779 17.609 Atomic orbital electron populations 1.24186 0.93772 1.04267 0.99524 1.22989 0.93746 0.87678 1.04199 1.98429 1.77796 1.30729 1.96597 1.19937 0.96376 0.92541 0.95604 1.22158 0.98627 0.96519 1.03452 1.21674 0.98957 1.03917 0.93806 1.19723 0.88020 0.76262 0.82844 1.90695 1.14305 1.50150 1.85810 1.48295 1.08532 1.70902 1.05658 1.22542 0.81858 0.99845 0.97948 1.22382 0.95472 0.98042 0.92682 1.21622 0.96284 0.99649 1.00260 1.21662 0.94581 0.89198 0.92876 1.45293 1.15521 1.29665 1.41238 1.18954 0.93251 1.03389 1.19576 0.90874 1.24824 0.95118 0.99111 1.01139 1.69919 0.97318 1.45393 1.43326 0.86197 0.77179 0.81493 0.81452 1.21705 1.21668 1.20610 1.21918 0.89089 0.82730 1.01154 1.22510 0.94098 0.99134 0.93683 1.21608 1.01481 0.98364 0.96164 1.22129 0.97656 0.98935 0.81848 0.85290 0.86415 0.90836 0.90705 0.91175 0.91340 0.91011 0.91744 0.92049 0.89881 0.93086 0.93283 0.91311 0.93735 0.95987 0.93711 0.95873 0.89620 0.93614 0.91540 0.93013 0.90126 0.92363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.78 11.39 28.97 0.33 -1.45 16 2 C -0.06 -0.75 4.08 -36.06 -0.15 -0.89 16 3 Cl -0.06 -1.01 28.19 -51.86 -1.46 -2.47 16 4 C -0.04 -0.51 0.64 -156.81 -0.10 -0.61 16 5 C -0.15 -1.33 6.84 37.15 0.25 -1.08 16 6 C -0.13 -1.47 7.65 37.16 0.28 -1.19 16 7 C 0.54 8.96 6.35 -10.99 -0.07 8.89 16 8 O -0.53 -10.69 16.19 5.56 0.09 -10.60 16 9 N -0.60 -9.60 3.29 -171.44 -0.56 -10.16 16 10 C 0.10 1.38 4.01 -3.11 -0.01 1.37 16 11 C -0.08 -1.34 1.08 -152.18 -0.16 -1.50 16 12 C -0.12 -1.64 7.53 37.16 0.28 -1.36 16 13 C 0.14 2.88 6.32 -2.47 -0.02 2.87 16 14 N -0.59 -14.73 3.41 -167.44 -0.57 -15.30 16 15 C -0.22 -6.11 10.35 -15.06 -0.16 -6.27 16 16 H 0.07 1.95 7.85 -52.49 -0.41 1.53 16 17 C 0.00 -0.14 5.39 -17.43 -0.09 -0.23 16 18 N -0.91 -26.95 10.87 55.49 0.60 -26.35 16 19 Si 0.91 21.99 29.57 -169.99 -5.03 16.97 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 C 0.18 4.18 5.03 -1.41 -0.01 4.18 16 24 C -0.09 -1.64 1.06 -152.33 -0.16 -1.81 16 25 C -0.12 -1.89 7.45 37.16 0.28 -1.61 16 26 C 0.12 1.99 5.96 -3.27 -0.02 1.97 16 27 H 0.13 0.94 5.69 -52.48 -0.30 0.64 16 28 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 29 H 0.07 0.49 7.78 -51.93 -0.40 0.09 16 30 H 0.07 0.63 4.15 -51.93 -0.22 0.41 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.98 7.65 -51.93 -0.40 0.58 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.69 7.23 -51.93 -0.38 0.31 16 36 H 0.08 1.07 3.31 -51.93 -0.17 0.90 16 37 H 0.05 0.60 7.09 -51.93 -0.37 0.23 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.07 1.06 7.17 -51.93 -0.37 0.69 16 40 H 0.04 0.86 7.90 -51.93 -0.41 0.45 16 41 H 0.02 0.47 7.55 -51.93 -0.39 0.08 16 42 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 43 H 0.02 0.62 7.51 -51.93 -0.39 0.23 16 44 H 0.09 2.27 6.34 -51.93 -0.33 1.95 16 45 H 0.04 0.60 7.10 -51.93 -0.37 0.23 16 46 H 0.07 1.15 7.16 -51.93 -0.37 0.78 16 47 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.08 1.57 7.30 -51.93 -0.38 1.19 16 49 H 0.06 0.87 7.88 -51.93 -0.41 0.46 16 LS Contribution 377.69 15.07 5.69 5.69 Total: -1.00 -32.39 377.69 -8.50 -40.89 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -7.74 Total: 0.06 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: 0.48 Total: 1.28 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: -0.53 Total: -51.81 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.09 Total: -10.60 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.97 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.46 Total: -2.47 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.39 -8.50 -40.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982289086.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.824 kcal (2) G-P(sol) polarization free energy of solvation -32.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds