Wall clock time and date at job start Tue Mar 31 2020 23:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31155 * 1 3 3 Cl 1.73599 * 119.99967 * 2 1 4 4 C 1.50707 * 119.99983 * 180.02562 * 2 1 3 5 5 C 1.52993 * 109.47106 * 359.97438 * 4 2 1 6 6 C 1.53006 * 109.46686 * 240.00108 * 4 2 1 7 7 C 1.50697 * 109.47392 * 119.99991 * 4 2 1 8 8 O 1.21278 * 120.00168 * 114.66363 * 7 4 2 9 9 N 1.34777 * 120.00250 * 294.67201 * 7 4 2 10 10 C 1.47203 * 126.69798 * 4.74921 * 9 7 4 11 11 C 1.54059 * 106.25322 * 148.61336 * 10 9 7 12 12 C 1.53003 * 112.76195 * 141.69869 * 11 10 9 13 13 C 1.54308 * 109.26383 * 267.03655 * 11 10 9 14 14 N 1.48117 * 104.71380 * 136.30446 * 13 11 10 15 15 C 1.36936 * 127.84622 * 140.24741 * 14 13 11 16 16 H 1.07994 * 120.00190 * 345.50902 * 15 14 13 17 17 C 1.38818 * 119.99919 * 165.49665 * 15 14 13 18 18 N 1.31615 * 119.99712 * 349.38338 * 17 15 14 19 19 Si 1.86796 * 120.00020 * 169.37945 * 17 15 14 20 20 H 1.48492 * 109.47122 * 94.98105 * 19 17 15 21 21 H 1.48500 * 109.46833 * 214.98382 * 19 17 15 22 22 H 1.48505 * 109.47225 * 334.98070 * 19 17 15 23 23 C 1.49981 * 104.93486 * 320.71281 * 14 13 11 24 24 C 1.54321 * 103.81294 * 38.69583 * 23 14 13 25 25 C 1.53005 * 112.07186 * 99.66676 * 24 23 14 26 26 C 1.47196 * 126.70737 * 185.06829 * 9 7 4 27 27 H 1.08003 * 119.99899 * 179.97438 * 1 2 3 28 28 H 1.07993 * 120.00309 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47358 * 295.23966 * 5 4 2 30 30 H 1.09004 * 109.47166 * 55.24471 * 5 4 2 31 31 H 1.09000 * 109.47252 * 175.24360 * 5 4 2 32 32 H 1.09005 * 109.46596 * 180.02562 * 6 4 2 33 33 H 1.08997 * 109.47033 * 299.99559 * 6 4 2 34 34 H 1.08996 * 109.47726 * 60.00099 * 6 4 2 35 35 H 1.09002 * 110.07430 * 267.93261 * 10 9 7 36 36 H 1.09005 * 110.07262 * 29.46419 * 10 9 7 37 37 H 1.08999 * 109.46997 * 301.39281 * 12 11 10 38 38 H 1.09005 * 109.47218 * 61.38941 * 12 11 10 39 39 H 1.09002 * 109.46997 * 181.39046 * 12 11 10 40 40 H 1.08998 * 110.39111 * 255.11192 * 13 11 10 41 41 H 1.08999 * 110.39527 * 17.49524 * 13 11 10 42 42 H 0.97005 * 119.99853 * 180.02562 * 18 17 15 43 43 H 1.09001 * 110.28643 * 280.44604 * 23 14 13 44 44 H 1.08995 * 111.35184 * 157.46898 * 23 14 13 45 45 H 1.08996 * 109.46586 * 182.01220 * 25 24 23 46 46 H 1.08998 * 109.47120 * 302.00200 * 25 24 23 47 47 H 1.08992 * 109.47101 * 62.00922 * 25 24 23 48 48 H 1.09004 * 110.06607 * 330.53868 * 26 9 7 49 49 H 1.09000 * 110.06933 * 92.01637 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3115 0.0000 0.0000 3 17 2.1795 1.5034 0.0000 4 6 2.0651 -1.3052 -0.0006 5 6 1.0709 -2.4680 -0.0005 6 6 2.9447 -1.3867 1.2487 7 6 2.9315 -1.3845 -1.2310 8 8 4.1393 -1.3978 -1.1224 9 7 2.3641 -1.4406 -2.4523 10 6 0.9286 -1.3363 -2.7610 11 6 0.8330 -0.6738 -4.1486 12 6 -0.2843 -1.2645 -5.0109 13 6 0.6863 0.8525 -3.9750 14 7 1.6015 1.4355 -4.9831 15 6 1.3910 2.5338 -5.7733 16 1 0.3969 2.9432 -5.8753 17 6 2.4556 3.1212 -6.4432 18 7 3.6897 2.7610 -6.1614 19 14 2.1366 4.4227 -7.7446 20 1 2.2383 5.7713 -7.1314 21 1 3.1426 4.2949 -8.8294 22 1 0.7751 4.2364 -8.3076 23 6 2.8133 0.5520 -4.9618 24 6 2.2317 -0.8670 -4.7895 25 6 2.1594 -1.6238 -6.1174 26 6 3.0582 -1.6245 -3.7373 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9352 -0.0004 29 1 0.5020 -2.4597 0.9293 30 1 0.3891 -2.3633 -0.8445 31 1 1.6131 -3.4097 -0.0861 32 1 3.4900 -2.3305 1.2480 33 1 3.6530 -0.5582 1.2490 34 1 2.3181 -1.3293 2.1387 35 1 0.4782 -2.3286 -2.7857 36 1 0.4297 -0.7169 -2.0156 37 1 -0.1163 -2.3336 -5.1409 38 1 -1.2447 -1.1047 -4.5207 39 1 -0.2881 -0.7760 -5.9853 40 1 -0.3408 1.1601 -4.1716 41 1 0.9874 1.1513 -2.9709 42 1 4.4337 3.1717 -6.6292 43 1 3.4514 0.8062 -4.1155 44 1 3.3723 0.6227 -5.8948 45 1 1.7111 -2.6036 -5.9530 46 1 1.5509 -1.0599 -6.8243 47 1 3.1645 -1.7471 -6.5205 48 1 4.0643 -1.2088 -3.6817 49 1 3.1048 -2.6840 -3.9889 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982289086.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:27 Heat of formation + Delta-G solvation = -8.330565 kcal Electronic energy + Delta-G solvation = -30461.411116 eV Core-core repulsion = 26642.963687 eV Total energy + Delta-G solvation = -3818.447429 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.166 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.10586 -40.30782 -38.11433 -36.74954 -36.40522 -34.46886 -33.10951 -32.36819 -31.84742 -28.66575 -28.28875 -27.68123 -26.94623 -26.39963 -24.84923 -23.56125 -21.73801 -21.49135 -19.56370 -19.22311 -18.70349 -18.16657 -17.07813 -16.80352 -16.51043 -16.20917 -15.80431 -15.63643 -15.58472 -14.94198 -14.70187 -14.54578 -14.35770 -13.86071 -13.62349 -13.47954 -13.38417 -13.28933 -13.17790 -13.06825 -12.98756 -12.93571 -12.81075 -12.70345 -12.56065 -12.51308 -12.35352 -12.11667 -12.06877 -11.93525 -11.73070 -11.67005 -11.40190 -11.21048 -11.08879 -10.89487 -10.68726 -9.99648 -9.63469 -8.85161 -7.88048 -5.22365 0.83474 1.30620 1.43772 1.44623 1.54591 1.57044 2.00426 2.48713 3.29397 3.33739 3.42974 3.50155 3.61324 3.83314 3.90539 3.93920 4.07239 4.17177 4.31092 4.41798 4.46717 4.58124 4.64173 4.70732 4.73744 4.75515 4.78961 4.80815 4.84750 4.89071 4.95042 4.97882 5.08913 5.13060 5.15471 5.18523 5.23906 5.26857 5.28194 5.31241 5.34802 5.44378 5.48228 5.52929 5.67260 5.79011 6.17917 6.57741 7.00654 7.10500 7.71750 8.51382 9.25596 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.013837 B = 0.004555 C = 0.004126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.117401 B = 6146.135573 C = 6783.822967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 Cl -0.112 7.112 4 C -0.033 4.033 5 C -0.147 4.147 6 C -0.125 4.125 7 C 0.534 3.466 8 O -0.585 6.585 9 N -0.605 5.605 10 C 0.104 3.896 11 C -0.073 4.073 12 C -0.115 4.115 13 C 0.140 3.860 14 N -0.615 5.615 15 C -0.228 4.228 16 H 0.081 0.919 17 C -0.066 4.066 18 N -0.951 5.951 19 Si 0.972 3.028 20 H -0.292 1.292 21 H -0.296 1.296 22 H -0.262 1.262 23 C 0.188 3.812 24 C -0.084 4.084 25 C -0.111 4.111 26 C 0.119 3.881 27 H 0.171 0.829 28 H 0.121 0.879 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.038 0.962 34 H 0.094 0.906 35 H 0.110 0.890 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.045 0.955 40 H 0.056 0.944 41 H 0.007 0.993 42 H 0.245 0.755 43 H -0.030 1.030 44 H 0.047 0.953 45 H 0.089 0.911 46 H 0.050 0.950 47 H 0.043 0.957 48 H 0.038 0.962 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.188 -15.875 12.093 23.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.117 4.117 3 Cl -0.084 7.084 4 C -0.037 4.037 5 C -0.204 4.204 6 C -0.182 4.182 7 C 0.323 3.677 8 O -0.465 6.465 9 N -0.336 5.336 10 C -0.018 4.018 11 C -0.075 4.075 12 C -0.172 4.172 13 C 0.015 3.985 14 N -0.339 5.339 15 C -0.357 4.357 16 H 0.099 0.901 17 C -0.259 4.259 18 N -0.600 5.600 19 Si 0.801 3.199 20 H -0.220 1.220 21 H -0.223 1.223 22 H -0.186 1.186 23 C 0.063 3.937 24 C -0.086 4.086 25 C -0.169 4.169 26 C -0.004 4.004 27 H 0.188 0.812 28 H 0.139 0.861 29 H 0.124 0.876 30 H 0.106 0.894 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.058 0.942 34 H 0.112 0.888 35 H 0.128 0.872 36 H 0.111 0.889 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.024 0.976 42 H 0.054 0.946 43 H -0.012 1.012 44 H 0.065 0.935 45 H 0.108 0.892 46 H 0.069 0.931 47 H 0.063 0.937 48 H 0.056 0.944 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.353 -15.567 12.100 23.266 hybrid contribution 1.349 1.953 -0.807 2.507 sum -11.003 -13.614 11.293 20.831 Atomic orbital electron populations 1.24629 0.92528 1.06326 0.94709 1.23123 0.94370 0.85967 1.08269 1.98420 1.79102 1.33821 1.97036 1.19977 0.96615 0.94059 0.93017 1.22233 0.97908 0.94546 1.05683 1.21679 0.98941 1.02506 0.95101 1.20663 0.88009 0.74912 0.84083 1.90665 1.16855 1.52359 1.86640 1.48429 1.09598 1.70470 1.05102 1.22750 0.80537 1.02335 0.96184 1.22357 0.95093 0.95226 0.94793 1.21611 0.96126 1.00981 0.98532 1.21869 0.93873 0.92090 0.90712 1.45596 1.16513 1.29562 1.42230 1.19371 0.93444 1.03736 1.19155 0.90126 1.25649 0.94897 1.01730 1.03590 1.70154 0.98126 1.47038 1.44703 0.85153 0.77576 0.78547 0.78623 1.21973 1.22264 1.18640 1.21580 0.88520 0.86771 0.96855 1.22346 0.95301 0.95386 0.95568 1.21559 1.01286 0.99811 0.94201 1.22016 0.95584 1.00176 0.82644 0.81200 0.86078 0.87623 0.89446 0.90756 0.91427 0.94227 0.88771 0.87197 0.88867 0.89937 0.90509 0.93590 0.92604 0.97557 0.94623 1.01160 0.93494 0.89243 0.93123 0.93749 0.94370 0.89030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 11.39 67.63 0.77 -1.47 16 2 C -0.09 -2.11 4.08 25.49 0.10 -2.01 16 3 Cl -0.11 -3.66 28.19 -2.72 -0.08 -3.74 16 4 C -0.03 -0.75 0.64 -53.67 -0.03 -0.78 16 5 C -0.15 -1.81 6.84 71.98 0.49 -1.32 16 6 C -0.12 -2.81 7.65 71.98 0.55 -2.26 16 7 C 0.53 17.46 6.35 87.66 0.56 18.02 16 8 O -0.59 -24.75 16.19 -3.02 -0.05 -24.80 16 9 N -0.61 -18.47 3.29 -814.71 -2.68 -21.15 16 10 C 0.10 2.38 4.01 86.60 0.35 2.73 16 11 C -0.07 -2.13 1.08 -50.67 -0.05 -2.18 16 12 C -0.12 -2.54 7.53 71.98 0.54 -2.00 16 13 C 0.14 5.52 6.32 86.51 0.55 6.07 16 14 N -0.62 -31.54 3.41 -683.66 -2.33 -33.87 16 15 C -0.23 -12.80 10.35 84.04 0.87 -11.93 16 16 H 0.08 4.30 7.85 -2.91 -0.02 4.28 16 17 C -0.07 -3.81 5.39 84.86 0.46 -3.35 16 18 N -0.95 -59.81 10.87 21.65 0.24 -59.57 16 19 Si 0.97 46.59 29.57 68.60 2.03 48.62 16 20 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 21 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 22 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 23 C 0.19 9.54 5.03 86.15 0.43 9.97 16 24 C -0.08 -2.97 1.06 -50.77 -0.05 -3.03 16 25 C -0.11 -3.36 7.45 71.98 0.54 -2.82 16 26 C 0.12 4.04 5.96 86.50 0.52 4.56 16 27 H 0.17 1.25 5.69 -2.91 -0.02 1.23 16 28 H 0.12 1.86 8.06 -2.91 -0.02 1.84 16 29 H 0.11 0.69 7.78 -2.39 -0.02 0.67 16 30 H 0.09 0.85 4.15 -2.38 -0.01 0.84 16 31 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 33 H 0.04 1.13 7.65 -2.39 -0.02 1.11 16 34 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.11 1.62 7.23 -2.39 -0.02 1.60 16 36 H 0.09 1.96 3.31 -2.38 -0.01 1.96 16 37 H 0.08 1.36 7.09 -2.39 -0.02 1.34 16 38 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 39 H 0.04 1.26 7.17 -2.39 -0.02 1.24 16 40 H 0.06 2.05 7.90 -2.39 -0.02 2.03 16 41 H 0.01 0.28 7.55 -2.39 -0.02 0.26 16 42 H 0.24 15.05 8.31 -92.70 -0.77 14.28 16 43 H -0.03 -1.77 7.51 -2.39 -0.02 -1.79 16 44 H 0.05 2.70 6.34 -2.39 -0.02 2.69 16 45 H 0.09 1.94 7.10 -2.39 -0.02 1.93 16 46 H 0.05 1.70 7.16 -2.39 -0.02 1.68 16 47 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.04 1.61 7.30 -2.38 -0.02 1.59 16 49 H 0.09 2.51 7.88 -2.39 -0.02 2.49 16 Total: -1.00 -81.02 377.69 4.65 -76.37 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: 0.94 Total: 9.95 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: 6.58 Total: 8.19 kcal Atomic # 7 Polarization: -109.81 SS G_CDS: -4.78 Total: -114.59 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.05 Total: -24.80 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Atomic # 17 Polarization: -3.66 SS G_CDS: -0.08 Total: -3.74 kcal Total: -81.02 4.65 -76.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982289086.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.036 kcal (2) G-P(sol) polarization free energy of solvation -81.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds