Wall clock time and date at job start Tue Mar 31 2020 22:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 120.00111 * 2 1 4 4 H 1.48497 * 109.47081 * 90.00404 * 3 2 1 5 5 H 1.48498 * 109.47228 * 210.00194 * 3 2 1 6 6 H 1.48500 * 109.47165 * 330.00337 * 3 2 1 7 7 C 1.38807 * 119.99889 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00483 * 27.44970 * 7 2 1 9 9 N 1.36943 * 119.99978 * 207.44550 * 7 2 1 10 10 C 1.49287 * 127.10019 * 10.51163 * 9 7 2 11 11 C 1.56319 * 106.46371 * 171.23427 * 10 9 7 12 12 C 1.52129 * 100.90663 * 336.89382 * 11 10 9 13 13 N 1.46499 * 111.08600 * 285.84070 * 12 11 10 14 14 C 1.34780 * 119.99633 * 288.29871 * 13 12 11 15 15 O 1.21636 * 120.00471 * 0.02562 * 14 13 12 16 16 C 1.47309 * 119.99897 * 179.97438 * 14 13 12 17 17 C 1.46615 * 120.61251 * 359.72646 * 16 14 13 18 18 C 1.34231 * 119.80659 * 179.78063 * 17 16 14 19 19 N 1.37386 * 120.95574 * 0.46361 * 18 17 16 20 20 C 1.34894 * 132.30880 * 179.78761 * 19 18 17 21 21 N 1.30997 * 109.50855 * 180.02562 * 20 19 18 22 22 C 1.33128 * 109.92455 * 359.97438 * 21 20 19 23 23 C 1.38183 * 120.82939 * 359.79737 * 19 18 17 24 24 C 1.38572 * 120.61602 * 180.02562 * 16 14 13 25 25 C 1.51223 * 122.54808 * 151.15839 * 12 11 10 26 26 C 1.55697 * 104.60366 * 218.56233 * 25 12 11 27 27 C 1.55027 * 105.77611 * 7.12514 * 26 25 12 28 28 C 1.42701 * 127.10217 * 190.82017 * 9 7 2 29 29 H 1.09004 * 108.16888 * 103.45103 * 28 9 7 30 30 H 0.97001 * 119.99833 * 174.75245 * 1 2 3 31 31 H 1.08998 * 110.05090 * 290.61965 * 10 9 7 32 32 H 1.09003 * 110.05050 * 52.09761 * 10 9 7 33 33 H 1.09000 * 111.28197 * 218.89635 * 11 10 9 34 34 H 1.09003 * 110.97115 * 94.75803 * 11 10 9 35 35 H 0.96996 * 120.00163 * 108.30304 * 13 12 11 36 36 H 1.07996 * 120.09441 * 0.02562 * 17 16 14 37 37 H 1.08001 * 119.52002 * 180.23454 * 18 17 16 38 38 H 1.08008 * 125.24698 * 359.97438 * 20 19 18 39 39 H 1.08003 * 126.30156 * 180.02562 * 22 21 20 40 40 H 1.08006 * 120.49407 * 359.95325 * 24 16 14 41 41 H 1.08997 * 110.41081 * 337.33918 * 25 12 11 42 42 H 1.08995 * 110.41262 * 99.66487 * 25 12 11 43 43 H 1.09000 * 110.15836 * 126.37310 * 26 25 12 44 44 H 1.09003 * 110.15575 * 248.05997 * 26 25 12 45 45 H 1.09000 * 110.45225 * 266.30892 * 27 26 25 46 46 H 1.08998 * 110.93183 * 142.93851 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 1.4000 5 1 3.5477 1.4402 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.5614 -2.0846 -0.4321 9 7 3.2640 -1.2691 0.5460 10 6 3.9447 -0.2257 1.3685 11 6 5.2490 -0.8825 1.9264 12 6 4.8806 -2.3569 1.8583 13 7 3.9301 -2.7121 2.9150 14 6 4.3397 -2.7709 4.1977 15 8 5.4983 -2.5288 4.4781 16 6 3.3839 -3.1275 5.2604 17 6 1.9827 -3.4151 4.9386 18 6 1.1266 -3.7427 5.9192 19 7 1.5408 -3.8043 7.2277 20 6 0.8914 -4.0985 8.3728 21 7 1.7252 -4.0232 9.3803 22 6 2.9356 -3.6826 8.9430 23 6 2.8525 -3.5344 7.5687 24 6 3.7910 -3.1913 6.5834 25 6 5.9128 -3.4454 1.6672 26 6 5.2285 -4.4732 0.7187 27 6 3.8975 -3.8147 0.2736 28 6 4.1919 -2.3482 0.4419 29 1 4.9567 -2.0701 -0.2833 30 1 -0.4850 -0.8365 -0.0768 31 1 4.1932 0.6356 0.7485 32 1 3.3001 0.0800 2.1926 33 1 5.4402 -0.5719 2.9536 34 1 6.1024 -0.6603 1.2858 35 1 3.0062 -2.9049 2.6915 36 1 1.6413 -3.3673 3.9152 37 1 0.0963 -3.9573 5.6765 38 1 -0.1549 -4.3557 8.4476 39 1 3.8195 -3.5468 9.5487 40 1 4.8157 -2.9809 6.8523 41 1 6.8116 -3.0397 1.2029 42 1 6.1561 -3.9105 2.6224 43 1 5.8633 -4.6668 -0.1460 44 1 5.0287 -5.4021 1.2529 45 1 3.0817 -4.1263 0.9259 46 1 3.6750 -4.0511 -0.7669 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000991630470.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:25 Heat of formation + Delta-G solvation = 103.145506 kcal Electronic energy + Delta-G solvation = -30302.530669 eV Core-core repulsion = 26387.809712 eV Total energy + Delta-G solvation = -3914.720958 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.89403 -40.80440 -38.63941 -36.87113 -34.79611 -33.47144 -33.32941 -32.20354 -31.00844 -30.09086 -28.44390 -27.26294 -26.43592 -24.45490 -23.51546 -23.34050 -22.04491 -21.36211 -20.85442 -19.54311 -19.06258 -18.12862 -17.75889 -17.19315 -16.37867 -16.01996 -15.86928 -15.32998 -15.14410 -14.93026 -14.71771 -14.47851 -14.27932 -14.11703 -13.73436 -13.59863 -13.13071 -13.06749 -12.84448 -12.20566 -12.03711 -11.93157 -11.88642 -11.62292 -11.23407 -11.09152 -10.99789 -10.80464 -10.76771 -10.53069 -10.40373 -10.25308 -9.94702 -9.72687 -9.49726 -9.46193 -9.33104 -8.74208 -8.53081 -7.74236 -7.21095 -6.43376 -3.30113 0.38083 0.93912 2.38856 2.65965 2.87307 3.31071 3.37417 3.46165 3.59023 3.60742 4.18331 4.28288 4.37449 4.44266 4.51238 4.58625 4.73945 4.82428 4.91298 5.03865 5.19861 5.21563 5.34511 5.40905 5.47001 5.49486 5.53847 5.62517 5.73534 5.78376 5.79587 5.91429 5.99519 6.08015 6.12636 6.21167 6.23525 6.29130 6.31858 6.34931 6.38937 6.55384 6.64541 6.77909 6.91836 6.94972 7.60958 7.61920 7.79128 8.21165 8.41150 8.89285 9.52552 10.18369 11.04466 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011823 B = 0.003867 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.706282 B = 7239.171875 C = 8360.347808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.013 4.013 3 Si 1.059 2.941 4 H -0.294 1.294 5 H -0.288 1.288 6 H -0.298 1.298 7 C -0.334 4.334 8 H 0.079 0.921 9 N -0.590 5.590 10 C 0.112 3.888 11 C -0.121 4.121 12 C 0.131 3.869 13 N -0.684 5.684 14 C 0.563 3.437 15 O -0.544 6.544 16 C -0.144 4.144 17 C -0.102 4.102 18 C 0.039 3.961 19 N -0.363 5.363 20 C 0.150 3.850 21 N -0.462 5.462 22 C 0.003 3.997 23 C -0.017 4.017 24 C 0.003 3.997 25 C -0.110 4.110 26 C -0.117 4.117 27 C -0.111 4.111 28 C 0.158 3.842 29 H 0.027 0.973 30 H 0.263 0.737 31 H 0.039 0.961 32 H 0.049 0.951 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.404 0.596 36 H 0.156 0.844 37 H 0.171 0.829 38 H 0.212 0.788 39 H 0.184 0.816 40 H 0.160 0.840 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.060 0.940 45 H 0.063 0.937 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.245 -9.841 10.005 15.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.214 4.214 3 Si 0.892 3.108 4 H -0.222 1.222 5 H -0.216 1.216 6 H -0.226 1.226 7 C -0.461 4.461 8 H 0.097 0.903 9 N -0.315 5.315 10 C -0.012 4.012 11 C -0.160 4.160 12 C 0.043 3.957 13 N -0.335 5.335 14 C 0.350 3.650 15 O -0.423 6.423 16 C -0.150 4.150 17 C -0.123 4.123 18 C -0.079 4.079 19 N -0.035 5.035 20 C -0.126 4.126 21 N -0.175 5.175 22 C -0.154 4.154 23 C -0.125 4.125 24 C -0.018 4.018 25 C -0.149 4.149 26 C -0.155 4.155 27 C -0.150 4.150 28 C 0.048 3.952 29 H 0.044 0.956 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.241 0.759 36 H 0.173 0.827 37 H 0.188 0.812 38 H 0.228 0.772 39 H 0.201 0.799 40 H 0.177 0.823 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.082 0.918 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.347 -8.193 10.953 15.079 hybrid contribution -0.259 -1.457 -1.208 1.910 sum 6.089 -9.650 9.745 15.006 Atomic orbital electron populations 1.70938 1.05921 1.30064 1.48582 1.25702 0.96208 1.00742 0.98772 0.83891 0.74242 0.76262 0.76441 1.22151 1.21572 1.22613 1.19955 0.89411 0.97291 1.39435 0.90333 1.43956 1.14799 1.13797 1.58973 1.22563 0.92041 0.92438 0.94144 1.22492 0.97786 0.94090 1.01656 1.21537 0.90796 0.93308 0.90027 1.45655 1.13952 1.68623 1.05274 1.17755 0.87193 0.77635 0.82402 1.90765 1.18247 1.50518 1.82802 1.21109 0.93645 1.06210 0.94037 1.21979 0.91766 0.98762 0.99779 1.21482 1.00931 1.04928 0.80517 1.42944 1.09913 1.43383 1.07241 1.24954 1.00317 1.08804 0.78483 1.69982 1.01426 1.16479 1.29653 1.22749 0.96691 1.06354 0.89591 1.19620 0.84973 1.11635 0.96293 1.20926 0.99041 0.92375 0.89466 1.21859 0.97319 0.95780 0.99957 1.22611 0.96206 0.98010 0.98667 1.21569 0.96962 0.95235 1.01230 1.20804 0.92133 0.90085 0.92159 0.95612 0.92691 0.94347 0.93327 0.90557 0.90574 0.75884 0.82659 0.81193 0.77161 0.79895 0.82283 0.90896 0.90945 0.91727 0.92083 0.91811 0.91583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.91 13.70 55.49 0.76 -26.15 16 2 C -0.01 -0.35 5.44 -17.43 -0.09 -0.44 16 3 Si 1.06 25.78 24.80 -169.99 -4.22 21.56 16 4 H -0.29 -6.90 6.92 56.52 0.39 -6.51 16 5 H -0.29 -6.72 6.41 56.52 0.36 -6.35 16 6 H -0.30 -7.42 7.11 56.52 0.40 -7.01 16 7 C -0.33 -8.67 10.44 -15.06 -0.16 -8.83 16 8 H 0.08 2.14 8.06 -52.49 -0.42 1.72 16 9 N -0.59 -13.09 2.98 -162.63 -0.49 -13.57 16 10 C 0.11 2.34 4.81 -0.71 0.00 2.34 16 11 C -0.12 -2.11 6.22 -25.39 -0.16 -2.27 16 12 C 0.13 2.13 0.41 -130.71 -0.05 2.08 16 13 N -0.68 -10.72 4.33 -47.67 -0.21 -10.93 16 14 C 0.56 8.75 7.08 -12.57 -0.09 8.66 16 15 O -0.54 -9.56 14.53 5.25 0.08 -9.49 16 16 C -0.14 -1.93 6.05 -102.71 -0.62 -2.55 16 17 C -0.10 -1.18 9.66 -37.62 -0.36 -1.54 16 18 C 0.04 0.40 10.92 -16.47 -0.18 0.22 16 19 N -0.36 -4.10 2.94 -62.50 -0.18 -4.29 16 20 C 0.15 1.57 12.70 -90.10 -1.14 0.42 16 21 N -0.46 -5.73 11.18 -13.90 -0.16 -5.88 16 22 C 0.00 0.03 12.03 -16.90 -0.20 -0.17 16 23 C -0.02 -0.20 6.77 -84.12 -0.57 -0.77 16 24 C 0.00 0.04 9.70 -38.67 -0.38 -0.34 16 25 C -0.11 -1.56 6.05 -26.19 -0.16 -1.72 16 26 C -0.12 -1.50 6.90 -24.22 -0.17 -1.66 16 27 C -0.11 -1.72 6.37 -26.90 -0.17 -1.89 16 28 C 0.16 2.90 2.65 -68.72 -0.18 2.71 16 29 H 0.03 0.50 7.99 -51.93 -0.41 0.09 16 30 H 0.26 7.58 8.73 -40.82 -0.36 7.23 16 31 H 0.04 0.84 4.55 -51.93 -0.24 0.60 16 32 H 0.05 1.08 7.55 -51.93 -0.39 0.69 16 33 H 0.08 1.34 7.17 -51.93 -0.37 0.97 16 34 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.40 6.32 5.88 -40.82 -0.24 6.08 16 36 H 0.16 1.69 6.59 -52.49 -0.35 1.34 16 37 H 0.17 1.14 8.06 -52.49 -0.42 0.72 16 38 H 0.21 1.36 8.06 -52.48 -0.42 0.94 16 39 H 0.18 1.59 8.06 -52.48 -0.42 1.16 16 40 H 0.16 1.82 7.68 -52.48 -0.40 1.41 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.07 1.07 6.84 -51.93 -0.36 0.72 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.06 0.99 7.31 -51.93 -0.38 0.61 16 46 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 362.34 15.07 5.46 5.46 Total: -1.00 -32.32 362.34 -9.79 -42.11 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -6.15 Total: 6.93 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -4.69 Total: -5.76 kcal Atomic # 7 Polarization: -60.55 SS G_CDS: -0.27 Total: -60.82 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.08 Total: -9.49 kcal Atomic # 14 Polarization: 25.78 SS G_CDS: -4.22 Total: 21.56 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.32 -9.79 -42.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991630470.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.257 kcal (2) G-P(sol) polarization free energy of solvation -32.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds