Wall clock time and date at job start Tue Mar 31 2020 22:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 120.00111 * 2 1 4 4 H 1.48497 * 109.47081 * 90.00404 * 3 2 1 5 5 H 1.48498 * 109.47228 * 210.00194 * 3 2 1 6 6 H 1.48500 * 109.47165 * 330.00337 * 3 2 1 7 7 C 1.38807 * 119.99889 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00483 * 27.44970 * 7 2 1 9 9 N 1.36943 * 119.99978 * 207.44550 * 7 2 1 10 10 C 1.49287 * 127.10019 * 10.51163 * 9 7 2 11 11 C 1.56319 * 106.46371 * 171.23427 * 10 9 7 12 12 C 1.52129 * 100.90663 * 336.89382 * 11 10 9 13 13 N 1.46499 * 111.08600 * 285.84070 * 12 11 10 14 14 C 1.34780 * 119.99633 * 288.29871 * 13 12 11 15 15 O 1.21636 * 120.00471 * 0.02562 * 14 13 12 16 16 C 1.47309 * 119.99897 * 179.97438 * 14 13 12 17 17 C 1.46615 * 120.61251 * 359.72646 * 16 14 13 18 18 C 1.34231 * 119.80659 * 179.78063 * 17 16 14 19 19 N 1.37386 * 120.95574 * 0.46361 * 18 17 16 20 20 C 1.34894 * 132.30880 * 179.78761 * 19 18 17 21 21 N 1.30997 * 109.50855 * 180.02562 * 20 19 18 22 22 C 1.33128 * 109.92455 * 359.97438 * 21 20 19 23 23 C 1.38183 * 120.82939 * 359.79737 * 19 18 17 24 24 C 1.38572 * 120.61602 * 180.02562 * 16 14 13 25 25 C 1.51223 * 122.54808 * 151.15839 * 12 11 10 26 26 C 1.55697 * 104.60366 * 218.56233 * 25 12 11 27 27 C 1.55027 * 105.77611 * 7.12514 * 26 25 12 28 28 C 1.42701 * 127.10217 * 190.82017 * 9 7 2 29 29 H 1.09004 * 108.16888 * 103.45103 * 28 9 7 30 30 H 0.97001 * 119.99833 * 174.75245 * 1 2 3 31 31 H 1.08998 * 110.05090 * 290.61965 * 10 9 7 32 32 H 1.09003 * 110.05050 * 52.09761 * 10 9 7 33 33 H 1.09000 * 111.28197 * 218.89635 * 11 10 9 34 34 H 1.09003 * 110.97115 * 94.75803 * 11 10 9 35 35 H 0.96996 * 120.00163 * 108.30304 * 13 12 11 36 36 H 1.07996 * 120.09441 * 0.02562 * 17 16 14 37 37 H 1.08001 * 119.52002 * 180.23454 * 18 17 16 38 38 H 1.08008 * 125.24698 * 359.97438 * 20 19 18 39 39 H 1.08003 * 126.30156 * 180.02562 * 22 21 20 40 40 H 1.08006 * 120.49407 * 359.95325 * 24 16 14 41 41 H 1.08997 * 110.41081 * 337.33918 * 25 12 11 42 42 H 1.08995 * 110.41262 * 99.66487 * 25 12 11 43 43 H 1.09000 * 110.15836 * 126.37310 * 26 25 12 44 44 H 1.09003 * 110.15575 * 248.05997 * 26 25 12 45 45 H 1.09000 * 110.45225 * 266.30892 * 27 26 25 46 46 H 1.08998 * 110.93183 * 142.93851 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 1.4000 5 1 3.5477 1.4402 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.5614 -2.0846 -0.4321 9 7 3.2640 -1.2691 0.5460 10 6 3.9447 -0.2257 1.3685 11 6 5.2490 -0.8825 1.9264 12 6 4.8806 -2.3569 1.8583 13 7 3.9301 -2.7121 2.9150 14 6 4.3397 -2.7709 4.1977 15 8 5.4983 -2.5288 4.4781 16 6 3.3839 -3.1275 5.2604 17 6 1.9827 -3.4151 4.9386 18 6 1.1266 -3.7427 5.9192 19 7 1.5408 -3.8043 7.2277 20 6 0.8914 -4.0985 8.3728 21 7 1.7252 -4.0232 9.3803 22 6 2.9356 -3.6826 8.9430 23 6 2.8525 -3.5344 7.5687 24 6 3.7910 -3.1913 6.5834 25 6 5.9128 -3.4454 1.6672 26 6 5.2285 -4.4732 0.7187 27 6 3.8975 -3.8147 0.2736 28 6 4.1919 -2.3482 0.4419 29 1 4.9567 -2.0701 -0.2833 30 1 -0.4850 -0.8365 -0.0768 31 1 4.1932 0.6356 0.7485 32 1 3.3001 0.0800 2.1926 33 1 5.4402 -0.5719 2.9536 34 1 6.1024 -0.6603 1.2858 35 1 3.0062 -2.9049 2.6915 36 1 1.6413 -3.3673 3.9152 37 1 0.0963 -3.9573 5.6765 38 1 -0.1549 -4.3557 8.4476 39 1 3.8195 -3.5468 9.5487 40 1 4.8157 -2.9809 6.8523 41 1 6.8116 -3.0397 1.2029 42 1 6.1561 -3.9105 2.6224 43 1 5.8633 -4.6668 -0.1460 44 1 5.0287 -5.4021 1.2529 45 1 3.0817 -4.1263 0.9259 46 1 3.6750 -4.0511 -0.7669 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000991630470.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:24 Heat of formation + Delta-G solvation = 84.693703 kcal Electronic energy + Delta-G solvation = -30303.330799 eV Core-core repulsion = 26387.809712 eV Total energy + Delta-G solvation = -3915.521088 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.74810 -42.13376 -39.87618 -37.82398 -36.38822 -34.65682 -34.36600 -34.00586 -32.11910 -31.43735 -29.36739 -28.72945 -27.78045 -25.60442 -25.18411 -24.22923 -22.91944 -22.78176 -21.98666 -21.08644 -20.32646 -19.23235 -18.94206 -18.73594 -17.52434 -17.10763 -16.89949 -16.69727 -16.33553 -16.33379 -15.94819 -15.60976 -15.48360 -15.33158 -15.07212 -14.88935 -14.52803 -14.19117 -14.06861 -13.70037 -13.45542 -13.14596 -12.94159 -12.78582 -12.75995 -12.63448 -12.43725 -12.15685 -11.90651 -11.73736 -11.66441 -11.43925 -11.38924 -11.34684 -11.17327 -10.82070 -10.53019 -10.38916 -10.01944 -9.13002 -8.61298 -8.56970 -5.36993 -0.56159 0.08700 1.40591 1.49686 1.57495 1.64405 1.65857 2.01952 2.13439 2.51483 2.54502 2.84973 3.09467 3.39592 3.46374 3.57498 3.59300 3.75738 3.76729 3.86279 3.94748 3.96323 4.09639 4.22925 4.29541 4.38838 4.42213 4.52279 4.57166 4.66868 4.68952 4.73202 4.85089 4.86887 4.91251 4.95242 4.99295 5.04549 5.12896 5.18006 5.30528 5.37036 5.44813 5.46669 5.65762 5.71323 6.12557 6.13266 6.55415 6.76697 6.81520 7.18968 7.54996 8.22340 8.91871 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011823 B = 0.003867 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.706282 B = 7239.171875 C = 8360.347808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.065 4.065 3 Si 1.092 2.908 4 H -0.285 1.285 5 H -0.272 1.272 6 H -0.308 1.308 7 C -0.306 4.306 8 H 0.059 0.941 9 N -0.603 5.603 10 C 0.109 3.891 11 C -0.114 4.114 12 C 0.139 3.861 13 N -0.686 5.686 14 C 0.565 3.435 15 O -0.568 6.568 16 C -0.165 4.165 17 C -0.119 4.119 18 C 0.051 3.949 19 N -0.372 5.372 20 C 0.163 3.837 21 N -0.491 5.491 22 C 0.005 3.995 23 C -0.041 4.041 24 C 0.009 3.991 25 C -0.105 4.105 26 C -0.103 4.103 27 C -0.110 4.110 28 C 0.143 3.857 29 H 0.029 0.971 30 H 0.252 0.748 31 H 0.034 0.966 32 H 0.029 0.971 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.403 0.597 36 H 0.157 0.843 37 H 0.206 0.794 38 H 0.250 0.750 39 H 0.204 0.796 40 H 0.163 0.837 41 H 0.087 0.913 42 H 0.067 0.933 43 H 0.085 0.915 44 H 0.075 0.925 45 H 0.058 0.942 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.323 -11.061 10.920 17.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.261 4.261 3 Si 0.921 3.079 4 H -0.212 1.212 5 H -0.198 1.198 6 H -0.236 1.236 7 C -0.434 4.434 8 H 0.077 0.923 9 N -0.328 5.328 10 C -0.015 4.015 11 C -0.152 4.152 12 C 0.051 3.949 13 N -0.336 5.336 14 C 0.354 3.646 15 O -0.449 6.449 16 C -0.171 4.171 17 C -0.140 4.140 18 C -0.066 4.066 19 N -0.043 5.043 20 C -0.112 4.112 21 N -0.205 5.205 22 C -0.151 4.151 23 C -0.149 4.149 24 C -0.012 4.012 25 C -0.144 4.144 26 C -0.141 4.141 27 C -0.148 4.148 28 C 0.034 3.966 29 H 0.046 0.954 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.047 0.953 33 H 0.092 0.908 34 H 0.115 0.885 35 H 0.240 0.760 36 H 0.174 0.826 37 H 0.223 0.777 38 H 0.265 0.735 39 H 0.221 0.779 40 H 0.180 0.820 41 H 0.106 0.894 42 H 0.086 0.914 43 H 0.103 0.897 44 H 0.093 0.907 45 H 0.077 0.923 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.480 -9.440 11.868 16.909 hybrid contribution -0.618 -1.176 -1.395 1.927 sum 6.862 -10.617 10.473 16.416 Atomic orbital electron populations 1.71019 1.06966 1.29480 1.52239 1.26547 0.96269 1.03419 0.99859 0.83443 0.73864 0.73604 0.76959 1.21156 1.19842 1.23641 1.19849 0.90621 0.96051 1.36917 0.92310 1.43938 1.14383 1.15581 1.58900 1.22589 0.93217 0.92390 0.93277 1.22461 0.96557 0.94563 1.01634 1.21547 0.91138 0.93456 0.88763 1.45673 1.13798 1.68719 1.05449 1.18010 0.87212 0.76871 0.82547 1.90738 1.19313 1.51766 1.83119 1.21004 0.94250 1.08115 0.93705 1.21976 0.91305 1.00312 1.00379 1.21960 1.02092 1.02862 0.79676 1.43134 1.09727 1.43627 1.07859 1.25788 1.01488 1.06274 0.77693 1.70033 1.02036 1.17792 1.30648 1.23205 0.97288 1.04989 0.89649 1.19726 0.85622 1.12994 0.96540 1.20981 0.99373 0.91600 0.89287 1.21858 0.97220 0.95117 1.00204 1.22544 0.94599 0.97782 0.99198 1.21591 0.98552 0.93469 1.01214 1.21063 0.91341 0.90565 0.93653 0.95365 0.93798 0.94822 0.95267 0.90796 0.88493 0.76045 0.82600 0.77679 0.73453 0.77886 0.81970 0.89429 0.91429 0.89665 0.90655 0.92285 0.91741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.61 13.70 21.65 0.30 -57.31 16 2 C -0.07 -3.66 5.44 84.86 0.46 -3.20 16 3 Si 1.09 52.58 24.80 68.60 1.70 54.28 16 4 H -0.28 -13.12 6.92 99.48 0.69 -12.43 16 5 H -0.27 -12.21 6.41 99.48 0.64 -11.57 16 6 H -0.31 -15.21 7.11 99.48 0.71 -14.50 16 7 C -0.31 -16.07 10.44 84.03 0.88 -15.19 16 8 H 0.06 3.28 8.06 -2.91 -0.02 3.25 16 9 N -0.60 -26.52 2.98 -668.44 -1.99 -28.51 16 10 C 0.11 4.49 4.81 86.99 0.42 4.90 16 11 C -0.11 -3.78 6.22 31.46 0.20 -3.58 16 12 C 0.14 4.31 0.41 4.32 0.00 4.31 16 13 N -0.69 -21.11 4.33 -422.98 -1.83 -22.94 16 14 C 0.56 17.34 7.08 86.63 0.61 17.95 16 15 O -0.57 -19.66 14.53 -4.14 -0.06 -19.72 16 16 C -0.17 -4.37 6.05 -18.62 -0.11 -4.48 16 17 C -0.12 -2.66 9.66 23.54 0.23 -2.44 16 18 C 0.05 0.93 10.92 82.91 0.91 1.84 16 19 N -0.37 -7.64 2.94 -351.65 -1.03 -8.67 16 20 C 0.16 2.97 12.70 180.16 2.29 5.26 16 21 N -0.49 -11.19 11.18 -197.88 -2.21 -13.41 16 22 C 0.00 0.10 12.03 84.55 1.02 1.12 16 23 C -0.04 -0.94 6.77 38.71 0.26 -0.68 16 24 C 0.01 0.21 9.70 22.86 0.22 0.44 16 25 C -0.11 -2.71 6.05 30.95 0.19 -2.52 16 26 C -0.10 -2.34 6.90 32.22 0.22 -2.12 16 27 C -0.11 -3.22 6.37 30.49 0.19 -3.02 16 28 C 0.14 5.03 2.65 46.47 0.12 5.15 16 29 H 0.03 1.03 7.99 -2.39 -0.02 1.01 16 30 H 0.25 15.12 8.73 -92.71 -0.81 14.31 16 31 H 0.03 1.43 4.55 -2.39 -0.01 1.42 16 32 H 0.03 1.30 7.55 -2.39 -0.02 1.29 16 33 H 0.07 2.52 7.17 -2.39 -0.02 2.50 16 34 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 35 H 0.40 12.59 5.88 -92.71 -0.55 12.04 16 36 H 0.16 3.38 6.59 -2.91 -0.02 3.36 16 37 H 0.21 2.11 8.06 -2.91 -0.02 2.08 16 38 H 0.25 2.24 8.06 -2.91 -0.02 2.22 16 39 H 0.20 3.21 8.06 -2.91 -0.02 3.19 16 40 H 0.16 3.68 7.68 -2.91 -0.02 3.66 16 41 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.07 1.85 6.84 -2.39 -0.02 1.83 16 43 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.06 1.77 7.31 -2.39 -0.02 1.75 16 46 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -70.63 362.34 3.32 -67.32 By element: Atomic # 1 Polarization: 24.87 SS G_CDS: 0.35 Total: 25.21 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: 8.10 Total: 3.74 kcal Atomic # 7 Polarization: -124.06 SS G_CDS: -6.78 Total: -130.83 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.06 Total: -19.72 kcal Atomic # 14 Polarization: 52.58 SS G_CDS: 1.70 Total: 54.28 kcal Total: -70.63 3.32 -67.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991630470.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.009 kcal (2) G-P(sol) polarization free energy of solvation -70.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds