Wall clock time and date at job start Tue Mar 31 2020 22:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00196 * 2 1 4 4 H 1.48489 * 109.47175 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47113 * 300.00497 * 3 2 1 6 6 H 1.48505 * 109.46666 * 60.00020 * 3 2 1 7 7 C 1.38817 * 119.99870 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99813 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00207 * 359.97438 * 7 2 1 10 10 C 1.47365 * 125.57842 * 0.03812 * 9 7 2 11 11 C 1.56430 * 104.93648 * 204.70729 * 10 9 7 12 12 C 1.54916 * 101.05699 * 322.95924 * 11 10 9 13 13 N 1.46499 * 112.33300 * 273.49318 * 12 11 10 14 14 C 1.34777 * 120.00199 * 297.65268 * 13 12 11 15 15 O 1.21533 * 119.99911 * 359.97438 * 14 13 12 16 16 C 1.48056 * 119.99856 * 180.27125 * 14 13 12 17 17 C 1.39768 * 119.47114 * 179.44845 * 16 14 13 18 18 C 1.38134 * 119.57484 * 179.69499 * 17 16 14 19 19 C 1.39253 * 118.38137 * 0.60128 * 18 17 16 20 20 N 1.37347 * 133.61521 * 179.71011 * 19 18 17 21 21 H 0.96994 * 125.05684 * 359.97438 * 20 19 18 22 22 C 1.36721 * 109.89179 * 179.97438 * 20 19 18 23 23 C 1.34284 * 110.02521 * 359.97438 * 22 20 19 24 24 C 1.41192 * 119.09216 * 359.66410 * 19 18 17 25 25 N 1.32443 * 119.47475 * 359.72552 * 16 14 13 26 26 C 1.53587 * 109.08785 * 148.38571 * 12 11 10 27 27 C 1.54225 * 106.67139 * 246.33519 * 26 12 11 28 28 C 1.54761 * 104.15646 * 24.94371 * 27 26 12 29 29 C 1.46982 * 125.57985 * 179.97438 * 9 7 2 30 30 H 1.08989 * 112.53788 * 301.42366 * 29 9 7 31 31 H 0.96996 * 120.00056 * 359.97438 * 1 2 3 32 32 H 1.09006 * 110.37076 * 323.49643 * 10 9 7 33 33 H 1.09005 * 110.37316 * 85.82876 * 10 9 7 34 34 H 1.09001 * 111.55026 * 204.97097 * 11 10 9 35 35 H 1.08995 * 111.04845 * 80.73105 * 11 10 9 36 36 H 0.97001 * 120.00074 * 117.64371 * 13 12 11 37 37 H 1.08005 * 120.21129 * 0.02562 * 17 16 14 38 38 H 1.08008 * 120.81116 * 180.29170 * 18 17 16 39 39 H 1.08007 * 124.98880 * 179.97438 * 22 20 19 40 40 H 1.08002 * 126.48446 * 180.02562 * 23 22 20 41 41 H 1.08996 * 110.01734 * 5.63280 * 26 12 11 42 42 H 1.08996 * 110.01847 * 126.98617 * 26 12 11 43 43 H 1.08991 * 110.49439 * 143.61339 * 27 26 12 44 44 H 1.09001 * 110.49066 * 266.27818 * 27 26 12 45 45 H 1.08998 * 110.66591 * 80.62443 * 28 27 26 46 46 H 1.09004 * 110.66524 * 203.58946 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1411 -2.5314 -0.0008 11 6 -0.4090 -3.9371 0.6311 12 6 0.7721 -4.7540 0.0501 13 7 0.4652 -5.3163 -1.2674 14 6 -0.5381 -6.2058 -1.4034 15 8 -1.1881 -6.5417 -0.4330 16 6 -0.8443 -6.7787 -2.7339 17 6 -1.8797 -7.7089 -2.8603 18 6 -2.1713 -8.2400 -4.1017 19 6 -1.4060 -7.8337 -5.1918 20 7 -1.4159 -8.1524 -6.5278 21 1 -2.0279 -8.7773 -6.9470 22 6 -0.4348 -7.4577 -7.1790 23 6 0.2321 -6.6804 -6.3105 24 6 -0.3709 -6.8945 -4.9920 25 7 -0.1291 -6.4055 -3.7843 26 6 1.1816 -5.8342 1.0622 27 6 2.5985 -5.4694 1.5497 28 6 2.6921 -3.9402 1.3308 29 6 1.9332 -3.7264 -0.0016 30 1 2.5831 -3.8894 -0.8612 31 1 -0.4850 0.8400 0.0004 32 1 -0.5987 -1.7507 0.6069 33 1 -0.5258 -2.4944 -1.0200 34 1 -1.3648 -4.3471 0.3048 35 1 -0.3558 -3.8939 1.7188 36 1 0.9841 -5.0484 -2.0419 37 1 -2.4517 -8.0066 -1.9938 38 1 -2.9702 -8.9567 -4.2230 39 1 -0.2267 -7.5242 -8.2367 40 1 1.0568 -6.0219 -6.5401 41 1 0.4878 -5.8401 1.9028 42 1 1.1922 -6.8119 0.5805 43 1 2.7126 -5.7113 2.6063 44 1 3.3516 -5.9868 0.9553 45 1 2.2016 -3.4046 2.1435 46 1 3.7323 -3.6278 1.2384 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000991843221.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:07 Heat of formation + Delta-G solvation = 68.816153 kcal Electronic energy + Delta-G solvation = -29726.304360 eV Core-core repulsion = 25810.094770 eV Total energy + Delta-G solvation = -3916.209590 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.77110 -40.09229 -38.50560 -37.18023 -34.17556 -33.50194 -32.84225 -31.34715 -30.45387 -29.73688 -29.33327 -26.64275 -26.04669 -24.47977 -23.76787 -22.96268 -21.39221 -20.91728 -19.92432 -19.69934 -18.74814 -18.33515 -17.43463 -16.96771 -16.84031 -15.66234 -15.32663 -14.93494 -14.87349 -14.59892 -14.47641 -13.95260 -13.77360 -13.44545 -13.38628 -13.19431 -12.89590 -12.81493 -12.73371 -12.41130 -12.09205 -11.70193 -11.56516 -11.08240 -10.91427 -10.78788 -10.59635 -10.58627 -10.44214 -10.13108 -10.02503 -9.87759 -9.83243 -9.59046 -9.51941 -9.23509 -8.67382 -8.58646 -8.42335 -8.33598 -6.77244 -5.57315 -3.00172 0.70104 0.88925 2.34836 2.67157 3.00104 3.42815 3.44556 3.49577 3.51943 3.93366 3.99480 4.39031 4.53582 4.69534 4.73571 4.82666 5.00104 5.10774 5.25952 5.36631 5.42037 5.48726 5.59348 5.68953 5.74404 5.85629 5.93902 5.96829 6.08592 6.11378 6.19175 6.20924 6.24146 6.38217 6.46524 6.50241 6.63928 6.64356 6.68520 6.86986 6.87697 7.04773 7.08732 7.22796 7.64348 7.70059 7.72797 7.94883 8.04931 8.44346 8.59327 9.29017 9.89961 10.54792 11.45235 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012649 B = 0.003215 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.069315 B = 8706.840285 C = 9856.309753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.912 3.088 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.217 4.217 8 H 0.078 0.922 9 N -0.594 5.594 10 C 0.154 3.846 11 C -0.143 4.143 12 C 0.159 3.841 13 N -0.683 5.683 14 C 0.573 3.427 15 O -0.536 6.536 16 C 0.079 3.921 17 C -0.097 4.097 18 C -0.095 4.095 19 C 0.062 3.938 20 N -0.591 5.591 21 H 0.418 0.582 22 C 0.063 3.937 23 C -0.180 4.180 24 C 0.089 3.911 25 N -0.415 5.415 26 C -0.111 4.111 27 C -0.124 4.124 28 C -0.129 4.129 29 C 0.163 3.837 30 H 0.047 0.953 31 H 0.250 0.750 32 H 0.107 0.893 33 H 0.010 0.990 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.409 0.591 37 H 0.153 0.847 38 H 0.138 0.862 39 H 0.180 0.820 40 H 0.158 0.842 41 H 0.070 0.930 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.058 0.942 45 H 0.074 0.926 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.352 -19.442 -11.881 22.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.207 4.207 3 Si 0.743 3.257 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.345 4.345 8 H 0.096 0.904 9 N -0.318 5.318 10 C 0.029 3.971 11 C -0.183 4.183 12 C 0.072 3.928 13 N -0.332 5.332 14 C 0.357 3.643 15 O -0.413 6.413 16 C -0.069 4.069 17 C -0.119 4.119 18 C -0.124 4.124 19 C -0.049 4.049 20 N -0.195 5.195 21 H 0.256 0.744 22 C -0.064 4.064 23 C -0.206 4.206 24 C -0.047 4.047 25 N -0.127 5.127 26 C -0.150 4.150 27 C -0.162 4.162 28 C -0.170 4.170 29 C 0.055 3.945 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.125 0.875 33 H 0.028 0.972 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.246 0.754 37 H 0.171 0.829 38 H 0.155 0.845 39 H 0.197 0.803 40 H 0.176 0.824 41 H 0.089 0.911 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.092 0.908 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.205 -18.847 -11.180 22.025 hybrid contribution -0.291 0.071 -0.970 1.016 sum -2.496 -18.776 -12.151 22.503 Atomic orbital electron populations 1.69819 1.04849 1.24488 1.57712 1.24779 0.95668 0.97629 1.02622 0.86026 0.78646 0.83845 0.77152 1.20568 1.21905 1.21858 1.19090 0.90471 0.82293 1.42682 0.90447 1.44485 1.01838 0.99171 1.86312 1.22243 0.84232 0.92711 0.97900 1.23599 0.96647 0.98152 0.99887 1.21714 0.96972 0.92442 0.81622 1.45766 1.33711 1.42363 1.11333 1.17710 0.80596 0.79478 0.86492 1.90754 1.50612 1.61310 1.38581 1.21101 0.95323 0.97804 0.92692 1.21759 0.96977 0.95513 0.97666 1.20416 1.00084 1.01917 0.90005 1.19272 0.99919 1.00100 0.85569 1.41590 1.31817 1.40248 1.05805 0.74432 1.21946 0.90699 0.95310 0.98487 1.21657 1.04529 1.05598 0.88798 1.20049 0.95852 0.96575 0.92224 1.66930 1.25685 1.22349 0.97694 1.22284 0.96662 0.97668 0.98395 1.22359 0.96409 0.97347 1.00133 1.22947 1.00325 0.93915 0.99787 1.21765 0.91584 0.85793 0.95401 0.93591 0.93881 0.87494 0.97221 0.91346 0.91339 0.75435 0.82931 0.84464 0.80326 0.82434 0.91110 0.92313 0.92266 0.92365 0.90764 0.92374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.15 10.07 55.49 0.56 -26.59 16 2 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 3 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 6 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.22 -5.99 10.02 -15.06 -0.15 -6.14 16 8 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 9 N -0.59 -15.12 3.05 -160.11 -0.49 -15.60 16 10 C 0.15 3.90 5.95 -1.72 -0.01 3.89 16 11 C -0.14 -3.07 5.85 -23.88 -0.14 -3.21 16 12 C 0.16 3.05 0.73 -129.37 -0.09 2.96 16 13 N -0.68 -12.42 5.22 -46.22 -0.24 -12.66 16 14 C 0.57 10.19 6.97 -12.23 -0.09 10.10 16 15 O -0.54 -10.35 14.11 5.34 0.08 -10.28 16 16 C 0.08 1.23 6.74 -83.00 -0.56 0.67 16 17 C -0.10 -1.23 9.60 -39.05 -0.37 -1.60 16 18 C -0.10 -0.96 10.18 -39.24 -0.40 -1.36 16 19 C 0.06 0.66 7.29 -83.90 -0.61 0.05 16 20 N -0.59 -4.04 6.05 -10.58 -0.06 -4.10 16 21 H 0.42 1.38 8.96 -40.82 -0.37 1.01 16 22 C 0.06 0.41 11.81 -16.77 -0.20 0.22 16 23 C -0.18 -1.81 11.08 -37.63 -0.42 -2.22 16 24 C 0.09 1.18 7.52 -83.10 -0.62 0.56 16 25 N -0.42 -6.47 9.57 -6.43 -0.06 -6.53 16 26 C -0.11 -1.91 5.27 -25.79 -0.14 -2.04 16 27 C -0.12 -1.95 6.84 -25.16 -0.17 -2.12 16 28 C -0.13 -2.43 6.25 -24.84 -0.16 -2.58 16 29 C 0.16 3.42 3.63 -65.58 -0.24 3.18 16 30 H 0.05 0.97 7.98 -51.94 -0.41 0.55 16 31 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.11 3.04 5.83 -51.93 -0.30 2.74 16 33 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.07 1.48 6.65 -51.93 -0.35 1.13 16 35 H 0.07 1.44 7.63 -51.93 -0.40 1.04 16 36 H 0.41 7.32 7.81 -40.82 -0.32 7.00 16 37 H 0.15 1.78 7.61 -52.48 -0.40 1.38 16 38 H 0.14 0.89 8.06 -52.48 -0.42 0.46 16 39 H 0.18 0.43 8.06 -52.48 -0.42 0.01 16 40 H 0.16 1.39 8.06 -52.49 -0.42 0.96 16 41 H 0.07 1.23 7.37 -51.93 -0.38 0.85 16 42 H 0.06 0.99 7.49 -51.93 -0.39 0.60 16 43 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.07 1.52 8.10 -51.93 -0.42 1.10 16 46 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 368.47 15.07 5.55 5.55 Total: -1.00 -33.80 368.47 -10.40 -44.20 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -6.24 Total: 8.87 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -4.46 Total: -0.09 kcal Atomic # 7 Polarization: -65.19 SS G_CDS: -0.30 Total: -65.49 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.08 Total: -10.28 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.80 -10.40 -44.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991843221.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.016 kcal (2) G-P(sol) polarization free energy of solvation -33.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds