Wall clock time and date at job start Tue Mar 31 2020 22:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00196 * 2 1 4 4 H 1.48489 * 109.47175 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47113 * 300.00497 * 3 2 1 6 6 H 1.48505 * 109.46666 * 60.00020 * 3 2 1 7 7 C 1.38817 * 119.99870 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99813 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00207 * 359.97438 * 7 2 1 10 10 C 1.47365 * 125.57842 * 0.03812 * 9 7 2 11 11 C 1.56430 * 104.93648 * 204.70729 * 10 9 7 12 12 C 1.54916 * 101.05699 * 322.95924 * 11 10 9 13 13 N 1.46499 * 112.33300 * 273.49318 * 12 11 10 14 14 C 1.34777 * 120.00199 * 297.65268 * 13 12 11 15 15 O 1.21533 * 119.99911 * 359.97438 * 14 13 12 16 16 C 1.48056 * 119.99856 * 180.27125 * 14 13 12 17 17 C 1.39768 * 119.47114 * 179.44845 * 16 14 13 18 18 C 1.38134 * 119.57484 * 179.69499 * 17 16 14 19 19 C 1.39253 * 118.38137 * 0.60128 * 18 17 16 20 20 N 1.37347 * 133.61521 * 179.71011 * 19 18 17 21 21 H 0.96994 * 125.05684 * 359.97438 * 20 19 18 22 22 C 1.36721 * 109.89179 * 179.97438 * 20 19 18 23 23 C 1.34284 * 110.02521 * 359.97438 * 22 20 19 24 24 C 1.41192 * 119.09216 * 359.66410 * 19 18 17 25 25 N 1.32443 * 119.47475 * 359.72552 * 16 14 13 26 26 C 1.53587 * 109.08785 * 148.38571 * 12 11 10 27 27 C 1.54225 * 106.67139 * 246.33519 * 26 12 11 28 28 C 1.54761 * 104.15646 * 24.94371 * 27 26 12 29 29 C 1.46982 * 125.57985 * 179.97438 * 9 7 2 30 30 H 1.08989 * 112.53788 * 301.42366 * 29 9 7 31 31 H 0.96996 * 120.00056 * 359.97438 * 1 2 3 32 32 H 1.09006 * 110.37076 * 323.49643 * 10 9 7 33 33 H 1.09005 * 110.37316 * 85.82876 * 10 9 7 34 34 H 1.09001 * 111.55026 * 204.97097 * 11 10 9 35 35 H 1.08995 * 111.04845 * 80.73105 * 11 10 9 36 36 H 0.97001 * 120.00074 * 117.64371 * 13 12 11 37 37 H 1.08005 * 120.21129 * 0.02562 * 17 16 14 38 38 H 1.08008 * 120.81116 * 180.29170 * 18 17 16 39 39 H 1.08007 * 124.98880 * 179.97438 * 22 20 19 40 40 H 1.08002 * 126.48446 * 180.02562 * 23 22 20 41 41 H 1.08996 * 110.01734 * 5.63280 * 26 12 11 42 42 H 1.08996 * 110.01847 * 126.98617 * 26 12 11 43 43 H 1.08991 * 110.49439 * 143.61339 * 27 26 12 44 44 H 1.09001 * 110.49066 * 266.27818 * 27 26 12 45 45 H 1.08998 * 110.66591 * 80.62443 * 28 27 26 46 46 H 1.09004 * 110.66524 * 203.58946 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1411 -2.5314 -0.0008 11 6 -0.4090 -3.9371 0.6311 12 6 0.7721 -4.7540 0.0501 13 7 0.4652 -5.3163 -1.2674 14 6 -0.5381 -6.2058 -1.4034 15 8 -1.1881 -6.5417 -0.4330 16 6 -0.8443 -6.7787 -2.7339 17 6 -1.8797 -7.7089 -2.8603 18 6 -2.1713 -8.2400 -4.1017 19 6 -1.4060 -7.8337 -5.1918 20 7 -1.4159 -8.1524 -6.5278 21 1 -2.0279 -8.7773 -6.9470 22 6 -0.4348 -7.4577 -7.1790 23 6 0.2321 -6.6804 -6.3105 24 6 -0.3709 -6.8945 -4.9920 25 7 -0.1291 -6.4055 -3.7843 26 6 1.1816 -5.8342 1.0622 27 6 2.5985 -5.4694 1.5497 28 6 2.6921 -3.9402 1.3308 29 6 1.9332 -3.7264 -0.0016 30 1 2.5831 -3.8894 -0.8612 31 1 -0.4850 0.8400 0.0004 32 1 -0.5987 -1.7507 0.6069 33 1 -0.5258 -2.4944 -1.0200 34 1 -1.3648 -4.3471 0.3048 35 1 -0.3558 -3.8939 1.7188 36 1 0.9841 -5.0484 -2.0419 37 1 -2.4517 -8.0066 -1.9938 38 1 -2.9702 -8.9567 -4.2230 39 1 -0.2267 -7.5242 -8.2367 40 1 1.0568 -6.0219 -6.5401 41 1 0.4878 -5.8401 1.9028 42 1 1.1922 -6.8119 0.5805 43 1 2.7126 -5.7113 2.6063 44 1 3.3516 -5.9868 0.9553 45 1 2.2016 -3.4046 2.1435 46 1 3.7323 -3.6278 1.2384 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000991843221.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:06 Heat of formation + Delta-G solvation = 45.794490 kcal Electronic energy + Delta-G solvation = -29727.302655 eV Core-core repulsion = 25810.094770 eV Total energy + Delta-G solvation = -3917.207884 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.58132 -41.55745 -39.81876 -38.31801 -36.04177 -34.83277 -33.82559 -33.26953 -31.75737 -30.86483 -30.42086 -28.42380 -27.59654 -25.75858 -25.49920 -23.88872 -22.71690 -21.87810 -21.56875 -21.10120 -20.19940 -19.21587 -18.86056 -18.72711 -17.74463 -17.16233 -16.86315 -16.38452 -15.97279 -15.85813 -15.75997 -15.52086 -15.04503 -14.91127 -14.53854 -14.41478 -14.04938 -13.94515 -13.78519 -13.65656 -13.59096 -13.34713 -13.12655 -12.91750 -12.80035 -12.66384 -12.31582 -11.98113 -11.89475 -11.69639 -11.60872 -11.49140 -11.41926 -11.23372 -11.11715 -10.73098 -10.42912 -9.98095 -9.47366 -9.10999 -8.86266 -7.72616 -5.18062 -0.25490 0.02737 1.48093 1.49116 1.59497 1.65924 1.79821 2.01841 2.14589 2.51810 2.93116 3.01407 3.35927 3.39498 3.63921 3.65787 3.78580 3.93570 3.97045 4.00542 4.02086 4.37388 4.39415 4.45361 4.47950 4.55062 4.59156 4.66336 4.68905 4.81503 4.88376 4.96903 4.97372 5.00586 5.09686 5.18111 5.23002 5.32577 5.36712 5.42434 5.48103 5.52242 5.64923 5.68445 5.82911 5.85682 6.31157 6.47901 6.57882 6.84938 7.12594 7.20824 7.80546 8.45603 9.29126 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012649 B = 0.003215 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.069315 B = 8706.840285 C = 9856.309753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.071 4.071 3 Si 0.980 3.020 4 H -0.263 1.263 5 H -0.296 1.296 6 H -0.293 1.293 7 C -0.224 4.224 8 H 0.086 0.914 9 N -0.610 5.610 10 C 0.164 3.836 11 C -0.129 4.129 12 C 0.166 3.834 13 N -0.687 5.687 14 C 0.571 3.429 15 O -0.558 6.558 16 C 0.048 3.952 17 C -0.111 4.111 18 C -0.079 4.079 19 C 0.060 3.940 20 N -0.571 5.571 21 H 0.440 0.560 22 C 0.105 3.895 23 C -0.225 4.225 24 C 0.055 3.945 25 N -0.448 5.448 26 C -0.105 4.105 27 C -0.109 4.109 28 C -0.123 4.123 29 C 0.153 3.847 30 H 0.049 0.951 31 H 0.244 0.756 32 H 0.075 0.925 33 H -0.025 1.025 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.409 0.591 37 H 0.157 0.843 38 H 0.180 0.820 39 H 0.232 0.768 40 H 0.159 0.841 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.083 0.917 44 H 0.078 0.922 45 H 0.053 0.947 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.619 -22.075 -13.882 26.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.263 4.263 3 Si 0.809 3.191 4 H -0.188 1.188 5 H -0.224 1.224 6 H -0.220 1.220 7 C -0.353 4.353 8 H 0.104 0.896 9 N -0.334 5.334 10 C 0.039 3.961 11 C -0.169 4.169 12 C 0.079 3.921 13 N -0.336 5.336 14 C 0.358 3.642 15 O -0.436 6.436 16 C -0.098 4.098 17 C -0.133 4.133 18 C -0.107 4.107 19 C -0.052 4.052 20 N -0.176 5.176 21 H 0.282 0.718 22 C -0.024 4.024 23 C -0.250 4.250 24 C -0.082 4.082 25 N -0.160 5.160 26 C -0.143 4.143 27 C -0.147 4.147 28 C -0.163 4.163 29 C 0.046 3.954 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.093 0.907 33 H -0.007 1.007 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.245 0.755 37 H 0.175 0.825 38 H 0.198 0.802 39 H 0.248 0.752 40 H 0.176 0.824 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.102 0.898 44 H 0.096 0.904 45 H 0.072 0.928 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.459 -21.538 -13.193 25.300 hybrid contribution -0.549 0.827 -0.577 1.148 sum -2.007 -20.710 -13.770 24.951 Atomic orbital electron populations 1.70077 1.06367 1.24679 1.59132 1.25633 0.96516 1.01006 1.03144 0.84974 0.78242 0.79461 0.76458 1.18771 1.22381 1.22044 1.19472 0.91034 0.83266 1.41531 0.89644 1.44677 1.01875 1.00522 1.86276 1.21890 0.84571 0.94116 0.95516 1.23400 0.97573 0.96097 0.99812 1.21606 0.94964 0.92766 0.82767 1.45766 1.34298 1.42698 1.10818 1.18126 0.79750 0.78819 0.87532 1.90714 1.51155 1.62089 1.39666 1.20842 0.97438 0.99843 0.91701 1.21840 0.96646 0.95627 0.99236 1.20773 1.00111 1.01239 0.88552 1.19362 0.99093 0.99404 0.87341 1.41674 1.31780 1.39824 1.04304 0.71812 1.22684 0.87960 0.91835 0.99906 1.21916 1.06485 1.08296 0.88316 1.20704 0.97484 0.97613 0.92415 1.66796 1.26759 1.23683 0.98754 1.22223 0.97708 0.96893 0.97518 1.22302 0.95664 0.94675 1.02044 1.22794 0.99994 0.96254 0.97248 1.22010 0.92438 0.84081 0.96829 0.93353 0.94601 0.90743 1.00685 0.91922 0.90918 0.75535 0.82547 0.80245 0.75218 0.82364 0.91254 0.91780 0.89806 0.90352 0.92796 0.91468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.90 10.07 21.65 0.22 -58.68 16 2 C -0.07 -4.12 5.49 84.86 0.47 -3.66 16 3 Si 0.98 46.77 29.55 68.60 2.03 48.80 16 4 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 5 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 6 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 7 C -0.22 -12.67 10.02 84.03 0.84 -11.82 16 8 H 0.09 4.58 7.83 -2.91 -0.02 4.56 16 9 N -0.61 -32.20 3.05 -660.47 -2.02 -34.21 16 10 C 0.16 8.89 5.95 87.41 0.52 9.41 16 11 C -0.13 -5.80 5.85 32.44 0.19 -5.61 16 12 C 0.17 6.52 0.73 5.19 0.00 6.52 16 13 N -0.69 -26.13 5.22 -418.41 -2.18 -28.32 16 14 C 0.57 21.26 6.97 86.85 0.61 21.86 16 15 O -0.56 -22.31 14.11 -3.82 -0.05 -22.36 16 16 C 0.05 1.56 6.74 42.03 0.28 1.85 16 17 C -0.11 -2.80 9.60 22.62 0.22 -2.59 16 18 C -0.08 -1.40 10.18 22.49 0.23 -1.18 16 19 C 0.06 1.14 7.29 39.25 0.29 1.43 16 20 N -0.57 -5.44 6.05 -187.39 -1.13 -6.58 16 21 H 0.44 0.62 8.96 -92.71 -0.83 -0.21 16 22 C 0.10 0.95 11.81 83.03 0.98 1.93 16 23 C -0.23 -4.22 11.08 23.54 0.26 -3.96 16 24 C 0.05 1.44 7.52 41.93 0.32 1.75 16 25 N -0.45 -14.57 9.57 -174.26 -1.67 -16.24 16 26 C -0.10 -3.50 5.27 31.21 0.16 -3.33 16 27 C -0.11 -3.17 6.84 31.61 0.22 -2.95 16 28 C -0.12 -4.51 6.25 31.82 0.20 -4.31 16 29 C 0.15 6.53 3.63 46.25 0.17 6.70 16 30 H 0.05 2.05 7.98 -2.39 -0.02 2.03 16 31 H 0.24 14.70 8.31 -92.71 -0.77 13.93 16 32 H 0.07 4.53 5.83 -2.38 -0.01 4.52 16 33 H -0.02 -1.48 8.14 -2.38 -0.02 -1.50 16 34 H 0.06 2.86 6.65 -2.39 -0.02 2.85 16 35 H 0.07 3.16 7.63 -2.39 -0.02 3.15 16 36 H 0.41 15.52 7.81 -92.71 -0.72 14.79 16 37 H 0.16 3.67 7.61 -2.91 -0.02 3.65 16 38 H 0.18 1.58 8.06 -2.91 -0.02 1.55 16 39 H 0.23 -0.31 8.06 -2.91 -0.02 -0.34 16 40 H 0.16 2.76 8.06 -2.91 -0.02 2.74 16 41 H 0.07 2.35 7.37 -2.39 -0.02 2.33 16 42 H 0.06 2.10 7.49 -2.39 -0.02 2.08 16 43 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.05 2.20 8.10 -2.39 -0.02 2.18 16 46 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -79.31 368.47 0.62 -78.69 By element: Atomic # 1 Polarization: 27.38 SS G_CDS: -0.52 Total: 26.86 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: 5.95 Total: 12.04 kcal Atomic # 7 Polarization: -137.25 SS G_CDS: -6.78 Total: -144.03 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.05 Total: -22.36 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -79.31 0.62 -78.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991843221.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.488 kcal (2) G-P(sol) polarization free energy of solvation -79.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds