Wall clock time and date at job start Tue Mar 31 2020 23:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99906 * 2 1 4 4 H 1.48503 * 109.47177 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46857 * 299.99879 * 3 2 1 6 6 H 1.48492 * 109.47220 * 59.99727 * 3 2 1 7 7 C 1.38811 * 120.00283 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00527 * 180.02562 * 7 2 1 9 9 N 1.36945 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.49291 * 127.10146 * 0.02562 * 9 7 2 11 11 C 1.56230 * 106.50880 * 188.64267 * 10 9 7 12 12 C 1.52129 * 100.80864 * 23.44981 * 11 10 9 13 13 N 1.46494 * 111.08472 * 73.95924 * 12 11 10 14 14 C 1.34775 * 120.00221 * 61.01640 * 13 12 11 15 15 O 1.21566 * 120.00153 * 359.97438 * 14 13 12 16 16 C 1.47767 * 120.00049 * 179.97438 * 14 13 12 17 17 N 1.32747 * 120.05708 * 359.72283 * 16 14 13 18 18 C 1.31727 * 122.12922 * 179.74641 * 17 16 14 19 19 C 1.38300 * 121.68823 * 0.53955 * 18 17 16 20 20 C 1.39025 * 119.09647 * 359.73377 * 19 18 17 21 21 N 1.37188 * 134.65480 * 180.02562 * 20 19 18 22 22 H 0.97002 * 125.06547 * 359.97438 * 21 20 19 23 23 C 1.36721 * 109.87768 * 179.97438 * 21 20 19 24 24 C 1.34565 * 109.95973 * 0.02562 * 23 21 20 25 25 C 1.40408 * 120.05898 * 179.97438 * 16 14 13 26 26 C 1.51219 * 122.11940 * 208.13909 * 12 11 10 27 27 C 1.55696 * 104.60658 * 141.26845 * 26 12 11 28 28 C 1.56273 * 105.93719 * 352.75194 * 27 26 12 29 29 C 1.42704 * 127.10387 * 179.71136 * 9 7 2 30 30 H 1.09003 * 108.16770 * 256.55465 * 29 9 7 31 31 H 0.96998 * 120.00243 * 359.97438 * 1 2 3 32 32 H 1.09007 * 110.04898 * 307.90677 * 10 9 7 33 33 H 1.09000 * 110.04572 * 69.37791 * 10 9 7 34 34 H 1.09004 * 111.15152 * 141.33681 * 11 10 9 35 35 H 1.08999 * 111.14609 * 265.52037 * 11 10 9 36 36 H 0.97000 * 119.99915 * 241.01134 * 13 12 11 37 37 H 1.07994 * 119.15363 * 180.29660 * 18 17 16 38 38 H 1.08003 * 120.45572 * 179.71472 * 19 18 17 39 39 H 1.07999 * 125.02126 * 179.97438 * 23 21 20 40 40 H 1.07996 * 126.50592 * 180.02562 * 24 23 21 41 41 H 1.09001 * 110.41308 * 260.04964 * 26 12 11 42 42 H 1.09005 * 110.41032 * 22.36849 * 26 12 11 43 43 H 1.09000 * 110.15534 * 111.87420 * 27 26 12 44 44 H 1.09006 * 110.15873 * 233.63285 * 27 26 12 45 45 H 1.08999 * 110.97437 * 93.85845 * 28 27 26 46 46 H 1.09002 * 110.97403 * 217.58732 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1558 -2.5728 -0.0005 11 6 -0.4134 -4.0971 0.2250 12 6 0.8800 -4.5061 0.9138 13 7 0.9139 -4.0280 2.2981 14 6 -0.0204 -4.4416 3.1770 15 8 -0.8917 -5.2110 2.8209 16 6 0.0141 -3.9598 4.5734 17 7 0.9682 -3.1239 4.9650 18 6 1.0350 -2.6652 6.1980 19 6 0.1171 -3.0384 7.1628 20 6 -0.9051 -3.9161 6.8198 21 7 -1.9562 -4.4830 7.4949 22 1 -2.1634 -4.3331 8.4306 23 6 -2.6684 -5.2907 6.6524 24 6 -2.1150 -5.2769 5.4259 25 6 -0.9590 -4.3894 5.4899 26 6 1.4384 -5.9075 0.8088 27 6 2.9784 -5.7089 0.6946 28 6 3.2032 -4.1690 0.5528 29 6 1.8809 -3.7027 -0.0047 30 1 1.7873 -4.1072 -1.0126 31 1 -0.4850 0.8400 0.0004 32 1 -0.6051 -1.9943 0.8068 33 1 -0.5704 -2.2615 -0.9593 34 1 -1.2733 -4.2587 0.8751 35 1 -0.5369 -4.6196 -0.7235 36 1 1.6089 -3.4139 2.5822 37 1 1.8292 -1.9832 6.4632 38 1 0.1934 -2.6536 8.1690 39 1 -3.5450 -5.8569 6.9305 40 1 -2.4617 -5.8189 4.5585 41 1 1.1945 -6.4818 1.7025 42 1 1.0506 -6.4057 -0.0798 43 1 3.4725 -6.0796 1.5928 44 1 3.3597 -6.2269 -0.1854 45 1 3.3910 -3.7110 1.5239 46 1 4.0166 -3.9556 -0.1407 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992210359.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:03 Heat of formation + Delta-G solvation = 82.852640 kcal Electronic energy + Delta-G solvation = -30579.730758 eV Core-core repulsion = 26664.129836 eV Total energy + Delta-G solvation = -3915.600922 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.60794 -40.26165 -38.36089 -37.40959 -34.34806 -32.89484 -32.23102 -31.55186 -30.58986 -29.83106 -29.02009 -26.86546 -25.80968 -24.49844 -23.89853 -22.53997 -21.49475 -20.63329 -20.35124 -19.53603 -18.59043 -18.37241 -17.35073 -16.38122 -15.98845 -15.66410 -15.17157 -15.11689 -14.77403 -14.52012 -14.39190 -14.10272 -13.89146 -13.81008 -13.39378 -13.13013 -12.95219 -12.56142 -12.43551 -12.22045 -11.85284 -11.73984 -11.31031 -11.23791 -10.92634 -10.86374 -10.72690 -10.41277 -10.17394 -9.96640 -9.89556 -9.87482 -9.75053 -9.60872 -9.42804 -8.96051 -8.87931 -8.58158 -8.32625 -7.89485 -6.76684 -5.65957 -2.99962 0.58311 1.50196 2.59556 2.86795 3.18813 3.43549 3.49033 3.51437 3.64984 4.20892 4.45069 4.52776 4.62605 4.71616 4.73282 4.94005 5.16635 5.29295 5.31463 5.34423 5.44240 5.56125 5.64013 5.70110 5.82114 5.92286 5.95268 5.97777 6.04698 6.08019 6.22838 6.35580 6.40155 6.43214 6.45052 6.51677 6.57939 6.63578 6.79779 6.82721 6.94556 7.00594 7.27261 7.32750 7.61080 7.70760 7.87540 7.94426 8.28942 8.30503 8.82955 9.21831 9.88787 10.57958 11.46488 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010950 B = 0.004289 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.481370 B = 6526.014434 C = 7742.620864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.004 4.004 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.227 4.227 8 H 0.079 0.921 9 N -0.582 5.582 10 C 0.179 3.821 11 C -0.142 4.142 12 C 0.129 3.871 13 N -0.665 5.665 14 C 0.570 3.430 15 O -0.539 6.539 16 C 0.146 3.854 17 N -0.467 5.467 18 C 0.103 3.897 19 C -0.168 4.168 20 C 0.117 3.883 21 N -0.591 5.591 22 H 0.417 0.583 23 C 0.038 3.962 24 C -0.162 4.162 25 C -0.113 4.113 26 C -0.111 4.111 27 C -0.116 4.116 28 C -0.117 4.117 29 C 0.160 3.840 30 H 0.022 0.978 31 H 0.251 0.749 32 H 0.064 0.936 33 H 0.034 0.966 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.412 0.588 37 H 0.163 0.837 38 H 0.132 0.868 39 H 0.175 0.825 40 H 0.163 0.837 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.066 0.934 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.289 -11.612 14.679 18.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.201 4.201 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.355 4.355 8 H 0.097 0.903 9 N -0.305 5.305 10 C 0.056 3.944 11 C -0.181 4.181 12 C 0.041 3.959 13 N -0.315 5.315 14 C 0.354 3.646 15 O -0.417 6.417 16 C 0.001 3.999 17 N -0.180 5.180 18 C -0.051 4.051 19 C -0.192 4.192 20 C 0.003 3.997 21 N -0.196 5.196 22 H 0.254 0.746 23 C -0.087 4.087 24 C -0.187 4.187 25 C -0.122 4.122 26 C -0.150 4.150 27 C -0.154 4.154 28 C -0.155 4.155 29 C 0.049 3.951 30 H 0.039 0.961 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.052 0.948 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.249 0.751 37 H 0.180 0.820 38 H 0.150 0.850 39 H 0.192 0.808 40 H 0.180 0.820 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.084 0.916 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.343 -11.601 13.892 18.149 hybrid contribution -0.040 1.233 1.347 1.826 sum -1.383 -10.368 15.238 18.483 Atomic orbital electron populations 1.69936 1.04901 1.24854 1.56821 1.24770 0.95572 0.97554 1.02176 0.86105 0.78787 0.84109 0.77120 1.20499 1.21914 1.21882 1.19052 0.90271 0.82284 1.43888 0.90282 1.43645 1.01725 0.99173 1.85955 1.21998 0.83125 0.88737 1.00583 1.22829 0.96831 0.99316 0.99118 1.21652 0.99065 0.93621 0.81593 1.45531 1.29936 1.46908 1.09139 1.17640 0.82112 0.81197 0.83668 1.90689 1.36473 1.36058 1.78453 1.20897 0.90782 0.94006 0.94227 1.67648 1.22369 1.09496 1.18449 1.22386 0.97534 0.97709 0.87451 1.21145 0.95690 1.00590 1.01741 1.18263 0.91496 0.97817 0.92154 1.41607 1.24374 1.41197 1.12374 0.74624 1.22048 0.98692 0.97540 0.90371 1.21955 0.96149 1.02956 0.97668 1.19856 0.98411 1.01261 0.92627 1.21886 0.95058 0.96139 1.01912 1.22803 0.95705 0.95953 1.00928 1.21926 0.97897 0.94468 1.01258 1.20912 0.91584 0.87422 0.95141 0.96105 0.93868 0.91795 0.94804 0.90446 0.91770 0.75088 0.82016 0.84963 0.80758 0.81993 0.91704 0.91078 0.92213 0.91972 0.91550 0.91774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.24 10.55 55.49 0.59 -26.66 16 2 C 0.00 -0.12 5.49 -17.43 -0.10 -0.21 16 3 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 7 C -0.23 -6.21 10.30 -15.06 -0.16 -6.37 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.58 -14.65 3.16 -162.25 -0.51 -15.16 16 10 C 0.18 4.50 5.33 -0.76 0.00 4.50 16 11 C -0.14 -2.97 6.09 -25.44 -0.15 -3.13 16 12 C 0.13 2.48 0.42 -130.52 -0.06 2.42 16 13 N -0.67 -13.06 4.47 -47.36 -0.21 -13.27 16 14 C 0.57 11.15 7.19 -12.37 -0.09 11.06 16 15 O -0.54 -11.03 13.27 5.31 0.07 -10.96 16 16 C 0.15 2.62 6.78 -82.76 -0.56 2.06 16 17 N -0.47 -7.94 9.54 -9.66 -0.09 -8.03 16 18 C 0.10 1.37 11.13 -17.57 -0.20 1.17 16 19 C -0.17 -1.92 10.14 -39.27 -0.40 -2.32 16 20 C 0.12 1.49 7.34 -84.03 -0.62 0.88 16 21 N -0.59 -5.45 6.04 -10.59 -0.06 -5.52 16 22 H 0.42 2.26 8.96 -40.82 -0.37 1.90 16 23 C 0.04 0.37 11.82 -16.67 -0.20 0.17 16 24 C -0.16 -2.21 10.26 -37.82 -0.39 -2.60 16 25 C -0.11 -1.80 6.15 -104.88 -0.65 -2.44 16 26 C -0.11 -1.81 6.18 -26.19 -0.16 -1.97 16 27 C -0.12 -1.69 6.95 -23.54 -0.16 -1.86 16 28 C -0.12 -2.03 6.47 -26.04 -0.17 -2.20 16 29 C 0.16 3.32 2.71 -68.35 -0.19 3.14 16 30 H 0.02 0.46 7.99 -51.93 -0.42 0.05 16 31 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.06 1.81 7.05 -51.93 -0.37 1.45 16 33 H 0.03 0.92 7.98 -51.93 -0.41 0.50 16 34 H 0.08 1.68 6.27 -51.93 -0.33 1.35 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.41 8.40 6.94 -40.82 -0.28 8.11 16 37 H 0.16 1.66 8.06 -52.49 -0.42 1.23 16 38 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 39 H 0.18 0.96 8.06 -52.49 -0.42 0.53 16 40 H 0.16 2.30 7.23 -52.49 -0.38 1.92 16 41 H 0.06 1.08 7.74 -51.93 -0.40 0.68 16 42 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.07 1.19 7.20 -51.93 -0.37 0.81 16 46 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 367.05 15.07 5.53 5.53 Total: -1.00 -33.57 367.05 -10.21 -43.78 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -6.25 Total: 10.77 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: -4.24 Total: 2.31 kcal Atomic # 7 Polarization: -68.34 SS G_CDS: -0.29 Total: -68.64 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.07 Total: -10.96 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.57 -10.21 -43.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992210359.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.631 kcal (2) G-P(sol) polarization free energy of solvation -33.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds